Wall clock time and date at job start Tue Mar 31 2020 01:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 119.99986 * 2 1 4 4 C 1.53001 * 109.47247 * 125.00123 * 3 2 1 5 5 C 1.50693 * 109.47333 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99822 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00278 * 179.97438 * 5 4 3 8 8 C 1.47389 * 125.74424 * 180.02562 * 7 5 4 9 9 C 1.55410 * 106.74122 * 179.06584 * 8 7 5 10 10 H 1.08997 * 112.76329 * 146.41400 * 9 8 7 11 11 C 1.52911 * 106.56392 * 270.28880 * 9 8 7 12 12 C 1.51884 * 111.49408 * 169.08664 * 11 9 8 13 13 N 1.44345 * 113.48058 * 321.32555 * 12 11 9 14 14 C 1.36935 * 116.42190 * 187.48003 * 13 12 11 15 15 H 1.08001 * 120.00034 * 152.70737 * 14 13 12 16 16 C 1.38808 * 120.00225 * 332.70168 * 14 13 12 17 17 N 1.31613 * 119.99997 * 335.94482 * 16 14 13 18 18 Si 1.86805 * 119.99857 * 155.94535 * 16 14 13 19 19 H 1.48500 * 109.47268 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46983 * 120.00183 * 18 16 14 21 21 H 1.48497 * 109.46875 * 240.00088 * 18 16 14 22 22 C 1.43980 * 127.15188 * 7.50027 * 13 12 11 23 23 C 1.49787 * 116.29545 * 2.85442 * 22 13 12 24 24 H 1.08993 * 109.25133 * 141.41187 * 23 22 13 25 25 C 1.47936 * 125.73876 * 359.69858 * 7 5 4 26 26 H 1.07995 * 120.00282 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.00070 * 179.72365 * 1 2 3 28 28 H 1.08008 * 120.00277 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.46880 * 245.00128 * 3 2 1 30 30 H 1.08997 * 109.46854 * 4.99888 * 3 2 1 31 31 H 1.09002 * 109.47072 * 300.00339 * 4 3 2 32 32 H 1.09007 * 109.46867 * 60.00000 * 4 3 2 33 33 H 1.09001 * 109.99983 * 298.38687 * 8 7 5 34 34 H 1.08995 * 110.00359 * 59.74230 * 8 7 5 35 35 H 1.09001 * 109.04110 * 290.43413 * 11 9 8 36 36 H 1.09000 * 109.04444 * 49.31557 * 11 9 8 37 37 H 1.08997 * 108.95678 * 199.97453 * 12 11 9 38 38 H 1.09006 * 108.01616 * 82.00988 * 12 11 9 39 39 H 0.96998 * 120.00179 * 179.97438 * 17 16 14 40 40 H 1.09000 * 108.11520 * 241.08050 * 22 13 12 41 41 H 1.08995 * 108.11614 * 124.62467 * 22 13 12 42 42 H 1.08998 * 110.56024 * 274.13886 * 25 7 5 43 43 H 1.09000 * 110.56434 * 36.99815 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7889 2.6379 1.1813 6 8 3.5703 3.4643 0.3209 7 7 4.7054 2.8870 2.1376 8 6 5.5119 4.1147 2.2584 9 6 6.4002 3.9442 3.5221 10 1 7.3743 4.4227 3.4206 11 6 5.5960 4.4990 4.6984 12 6 6.2421 4.1502 6.0280 13 7 6.8046 2.8213 6.0631 14 6 7.2608 2.3846 7.2781 15 1 7.2773 1.3279 7.5007 16 6 7.7021 3.3000 8.2236 17 7 8.1325 4.4840 7.8426 18 14 7.6851 2.8514 10.0369 19 1 7.1599 1.4721 10.2008 20 1 9.0665 2.9220 10.5772 21 1 6.8160 3.8034 10.7742 22 6 6.9391 1.9047 4.9609 23 6 6.5008 2.4096 3.6206 24 1 7.1883 2.0458 2.8571 25 6 5.0662 1.9768 3.2466 26 1 -0.5400 0.9352 0.0004 27 1 -0.5400 -0.9353 -0.0045 28 1 1.8500 -0.9354 -0.0004 29 1 2.6212 1.4026 -0.9314 30 1 1.3585 2.1316 0.0895 31 1 2.4772 1.2356 2.1130 32 1 3.7400 0.5065 1.0920 33 1 6.1391 4.2371 1.3753 34 1 4.8590 4.9796 2.3754 35 1 5.5204 5.5817 4.5982 36 1 4.5941 4.0703 4.6779 37 1 5.4957 4.2362 6.8176 38 1 7.0364 4.8725 6.2166 39 1 8.4405 5.1238 8.5034 40 1 6.3609 1.0100 5.1917 41 1 7.9872 1.6144 4.8875 42 1 4.3896 2.1141 4.0900 43 1 5.0550 0.9401 2.9101 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566040383.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:38 Heat of formation + Delta-G solvation = 2.890521 kcal Electronic energy + Delta-G solvation = -22118.745589 eV Core-core repulsion = 18971.659774 eV Total energy + Delta-G solvation = -3147.085816 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.34633 -38.52093 -35.77319 -35.40072 -32.69634 -31.64184 -30.89973 -30.11796 -27.91614 -25.69983 -24.62347 -23.07928 -22.15091 -21.39094 -20.00412 -19.07920 -17.83176 -17.19816 -16.77855 -16.14424 -15.53966 -15.18132 -14.85750 -14.60254 -13.99421 -13.89828 -13.68357 -13.21070 -13.11822 -12.84485 -12.77486 -12.52732 -12.18268 -12.07711 -11.77667 -11.31149 -11.22894 -11.19108 -11.11478 -10.79234 -10.51456 -10.27564 -10.23281 -9.93556 -9.74139 -9.68012 -9.58493 -9.49899 -8.53112 -8.50472 -6.63945 -5.64439 -3.30038 2.03466 2.68770 3.06879 3.35829 3.44618 3.47074 4.39533 4.48206 4.72018 4.74333 4.84752 4.93778 5.06675 5.11137 5.17268 5.30725 5.37129 5.40646 5.52269 5.57774 5.62780 5.69335 5.77171 5.85006 5.90378 5.97039 6.05383 6.14024 6.20947 6.37723 6.40218 6.51649 6.54239 6.56447 6.64418 6.77501 6.84005 7.28564 7.60649 7.79612 7.91092 8.21354 8.50996 9.26805 9.96473 10.26008 11.21468 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028593 B = 0.003711 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.017989 B = 7542.660725 C = 8098.475852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C -0.079 4.079 4 C -0.132 4.132 5 C 0.525 3.475 6 O -0.551 6.551 7 N -0.617 5.617 8 C 0.108 3.892 9 C -0.081 4.081 10 H 0.098 0.902 11 C -0.122 4.122 12 C 0.156 3.844 13 N -0.585 5.585 14 C -0.269 4.269 15 H 0.066 0.934 16 C 0.006 3.994 17 N -0.889 5.889 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.289 1.289 22 C 0.176 3.824 23 C -0.098 4.098 24 H 0.074 0.926 25 C 0.106 3.894 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.019 0.981 38 H 0.079 0.921 39 H 0.252 0.748 40 H 0.014 0.986 41 H 0.024 0.976 42 H 0.077 0.923 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.104 -6.097 -12.433 16.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.171 4.171 3 C -0.116 4.116 4 C -0.172 4.172 5 C 0.314 3.686 6 O -0.430 6.430 7 N -0.351 5.351 8 C -0.014 4.014 9 C -0.100 4.100 10 H 0.116 0.884 11 C -0.160 4.160 12 C 0.031 3.969 13 N -0.310 5.310 14 C -0.398 4.398 15 H 0.084 0.916 16 C -0.194 4.194 17 N -0.533 5.533 18 Si 0.728 3.272 19 H -0.202 1.202 20 H -0.218 1.218 21 H -0.215 1.215 22 C 0.050 3.950 23 C -0.117 4.117 24 H 0.092 0.908 25 C -0.017 4.017 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.037 0.963 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.032 0.968 41 H 0.042 0.958 42 H 0.095 0.905 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.252 -5.521 -12.936 16.835 hybrid contribution 0.027 -0.224 1.094 1.117 sum -9.225 -5.746 -11.842 16.073 Atomic orbital electron populations 1.23873 0.95985 1.01853 1.01410 1.22988 0.96101 0.98394 0.99665 1.20508 0.97792 0.95343 0.98005 1.21598 0.98852 0.95600 1.01107 1.20359 0.78975 0.89020 0.80215 1.90682 1.66083 1.48717 1.37504 1.48787 1.39159 1.19581 1.27582 1.22415 0.93491 0.87050 0.98442 1.22058 0.98797 0.95786 0.93366 0.88404 1.21724 0.98414 0.99654 0.96222 1.20259 0.97240 0.88291 0.91095 1.42668 1.69338 1.13900 1.05092 1.19154 1.37537 0.92697 0.90449 0.91622 1.24981 0.98545 0.96915 0.98930 1.70002 1.43131 1.07803 1.32328 0.86296 0.77266 0.77997 0.85661 1.20200 1.21806 1.21534 1.19248 0.97804 0.92594 0.85402 1.21647 0.94939 0.95911 0.99221 0.90752 1.22591 0.96963 0.93207 0.88897 0.88548 0.88530 0.87294 0.90269 0.90784 0.88818 0.88847 0.91951 0.91452 0.92232 0.93537 0.96301 0.90333 0.93729 0.96815 0.95829 0.90531 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.57 14.32 29.02 0.42 -1.15 16 2 C -0.15 -1.31 9.52 -36.02 -0.34 -1.65 16 3 C -0.08 -0.80 4.95 -27.88 -0.14 -0.94 16 4 C -0.13 -1.37 4.70 -27.89 -0.13 -1.51 16 5 C 0.53 7.51 7.85 -10.99 -0.09 7.43 16 6 O -0.55 -9.71 16.32 5.55 0.09 -9.62 16 7 N -0.62 -8.79 3.34 -169.43 -0.57 -9.36 16 8 C 0.11 1.60 6.25 -2.28 -0.01 1.58 16 9 C -0.08 -1.30 3.60 -88.81 -0.32 -1.62 16 10 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 11 C -0.12 -2.19 4.83 -27.34 -0.13 -2.33 16 12 C 0.16 3.59 5.09 -5.76 -0.03 3.56 16 13 N -0.59 -14.01 3.23 -179.51 -0.58 -14.59 16 14 C -0.27 -7.17 9.27 -15.06 -0.14 -7.31 16 15 H 0.07 1.73 7.94 -52.49 -0.42 1.32 16 16 C 0.01 0.17 4.95 -17.43 -0.09 0.08 16 17 N -0.89 -25.06 10.89 55.49 0.60 -24.45 16 18 Si 0.90 21.25 29.62 -169.99 -5.03 16.21 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 C 0.18 3.45 5.75 -6.97 -0.04 3.41 16 23 C -0.10 -1.53 2.85 -90.88 -0.26 -1.79 16 24 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 25 C 0.11 1.43 5.48 -2.50 -0.01 1.42 16 26 H 0.10 0.77 7.84 -52.49 -0.41 0.35 16 27 H 0.10 0.65 8.06 -52.48 -0.42 0.23 16 28 H 0.11 0.80 8.06 -52.48 -0.42 0.37 16 29 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 30 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 0.82 7.87 -51.93 -0.41 0.41 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.02 7.78 -51.93 -0.40 0.62 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.82 6.68 -51.93 -0.35 0.47 16 37 H 0.02 0.47 8.11 -51.93 -0.42 0.05 16 38 H 0.08 2.07 5.79 -51.93 -0.30 1.77 16 39 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.01 0.27 7.81 -51.93 -0.41 -0.14 16 41 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 42 H 0.08 1.12 7.21 -51.93 -0.37 0.74 16 43 H 0.07 0.83 7.51 -51.93 -0.39 0.44 16 LS Contribution 337.77 15.07 5.09 5.09 Total: -1.00 -30.18 337.77 -8.93 -39.11 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -7.22 Total: -1.58 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -1.32 Total: -0.82 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.54 Total: -48.40 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.18 -8.93 -39.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566040383.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.002 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds