Wall clock time and date at job start Tue Mar 31 2020 01:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 119.99986 * 2 1 4 4 C 1.53001 * 109.47247 * 125.00123 * 3 2 1 5 5 C 1.50693 * 109.47333 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99822 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00278 * 179.97438 * 5 4 3 8 8 C 1.47389 * 125.74424 * 180.02562 * 7 5 4 9 9 C 1.55410 * 106.74122 * 179.06584 * 8 7 5 10 10 H 1.08997 * 112.76329 * 146.41400 * 9 8 7 11 11 C 1.52911 * 106.56392 * 270.28880 * 9 8 7 12 12 C 1.51884 * 111.49408 * 169.08664 * 11 9 8 13 13 N 1.44345 * 113.48058 * 321.32555 * 12 11 9 14 14 C 1.36935 * 116.42190 * 187.48003 * 13 12 11 15 15 H 1.08001 * 120.00034 * 152.70737 * 14 13 12 16 16 C 1.38808 * 120.00225 * 332.70168 * 14 13 12 17 17 N 1.31613 * 119.99997 * 335.94482 * 16 14 13 18 18 Si 1.86805 * 119.99857 * 155.94535 * 16 14 13 19 19 H 1.48500 * 109.47268 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46983 * 120.00183 * 18 16 14 21 21 H 1.48497 * 109.46875 * 240.00088 * 18 16 14 22 22 C 1.43980 * 127.15188 * 7.50027 * 13 12 11 23 23 C 1.49787 * 116.29545 * 2.85442 * 22 13 12 24 24 H 1.08993 * 109.25133 * 141.41187 * 23 22 13 25 25 C 1.47936 * 125.73876 * 359.69858 * 7 5 4 26 26 H 1.07995 * 120.00282 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.00070 * 179.72365 * 1 2 3 28 28 H 1.08008 * 120.00277 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.46880 * 245.00128 * 3 2 1 30 30 H 1.08997 * 109.46854 * 4.99888 * 3 2 1 31 31 H 1.09002 * 109.47072 * 300.00339 * 4 3 2 32 32 H 1.09007 * 109.46867 * 60.00000 * 4 3 2 33 33 H 1.09001 * 109.99983 * 298.38687 * 8 7 5 34 34 H 1.08995 * 110.00359 * 59.74230 * 8 7 5 35 35 H 1.09001 * 109.04110 * 290.43413 * 11 9 8 36 36 H 1.09000 * 109.04444 * 49.31557 * 11 9 8 37 37 H 1.08997 * 108.95678 * 199.97453 * 12 11 9 38 38 H 1.09006 * 108.01616 * 82.00988 * 12 11 9 39 39 H 0.96998 * 120.00179 * 179.97438 * 17 16 14 40 40 H 1.09000 * 108.11520 * 241.08050 * 22 13 12 41 41 H 1.08995 * 108.11614 * 124.62467 * 22 13 12 42 42 H 1.08998 * 110.56024 * 274.13886 * 25 7 5 43 43 H 1.09000 * 110.56434 * 36.99815 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7889 2.6379 1.1813 6 8 3.5703 3.4643 0.3209 7 7 4.7054 2.8870 2.1376 8 6 5.5119 4.1147 2.2584 9 6 6.4002 3.9442 3.5221 10 1 7.3743 4.4227 3.4206 11 6 5.5960 4.4990 4.6984 12 6 6.2421 4.1502 6.0280 13 7 6.8046 2.8213 6.0631 14 6 7.2608 2.3846 7.2781 15 1 7.2773 1.3279 7.5007 16 6 7.7021 3.3000 8.2236 17 7 8.1325 4.4840 7.8426 18 14 7.6851 2.8514 10.0369 19 1 7.1599 1.4721 10.2008 20 1 9.0665 2.9220 10.5772 21 1 6.8160 3.8034 10.7742 22 6 6.9391 1.9047 4.9609 23 6 6.5008 2.4096 3.6206 24 1 7.1883 2.0458 2.8571 25 6 5.0662 1.9768 3.2466 26 1 -0.5400 0.9352 0.0004 27 1 -0.5400 -0.9353 -0.0045 28 1 1.8500 -0.9354 -0.0004 29 1 2.6212 1.4026 -0.9314 30 1 1.3585 2.1316 0.0895 31 1 2.4772 1.2356 2.1130 32 1 3.7400 0.5065 1.0920 33 1 6.1391 4.2371 1.3753 34 1 4.8590 4.9796 2.3754 35 1 5.5204 5.5817 4.5982 36 1 4.5941 4.0703 4.6779 37 1 5.4957 4.2362 6.8176 38 1 7.0364 4.8725 6.2166 39 1 8.4405 5.1238 8.5034 40 1 6.3609 1.0100 5.1917 41 1 7.9872 1.6144 4.8875 42 1 4.3896 2.1141 4.0900 43 1 5.0550 0.9401 2.9101 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566040383.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:37 Heat of formation + Delta-G solvation = -14.104966 kcal Electronic energy + Delta-G solvation = -22119.482569 eV Core-core repulsion = 18971.659774 eV Total energy + Delta-G solvation = -3147.822795 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.56853 -39.81231 -37.30649 -36.24960 -34.26567 -33.18048 -32.14101 -31.42662 -29.27412 -27.17028 -25.91697 -24.48783 -23.60848 -22.82174 -20.65872 -20.16835 -19.36759 -18.88618 -17.91144 -17.29433 -16.90506 -16.51741 -16.13889 -15.80984 -15.65565 -15.32316 -14.90453 -14.74695 -14.42194 -14.10048 -13.83767 -13.72569 -13.45181 -13.25908 -12.99157 -12.92231 -12.83698 -12.52246 -12.17692 -12.04132 -11.99687 -11.88672 -11.76929 -11.47193 -11.28966 -11.20575 -10.92602 -10.51254 -10.20129 -9.69179 -8.63906 -7.66521 -5.37332 1.40389 1.46499 1.50007 1.59814 1.60662 1.99386 2.53029 3.24469 3.34981 3.49049 3.75901 3.78032 3.82838 3.99054 4.13321 4.18594 4.32729 4.35951 4.46602 4.47666 4.54962 4.63124 4.65146 4.71928 4.76552 4.91539 4.95777 5.00590 5.06102 5.07669 5.09867 5.20763 5.24539 5.31642 5.35295 5.44086 5.71822 5.77588 5.92800 5.96520 6.46652 6.50755 7.11586 7.24285 8.07813 8.26222 9.14712 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028593 B = 0.003711 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.017989 B = 7542.660725 C = 8098.475852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C -0.076 4.076 4 C -0.124 4.124 5 C 0.522 3.478 6 O -0.589 6.589 7 N -0.617 5.617 8 C 0.116 3.884 9 C -0.078 4.078 10 H 0.092 0.908 11 C -0.110 4.110 12 C 0.165 3.835 13 N -0.598 5.598 14 C -0.281 4.281 15 H 0.066 0.934 16 C -0.045 4.045 17 N -0.918 5.918 18 Si 0.958 3.042 19 H -0.266 1.266 20 H -0.292 1.292 21 H -0.292 1.292 22 C 0.174 3.826 23 C -0.095 4.095 24 H 0.095 0.905 25 C 0.115 3.885 26 H 0.092 0.908 27 H 0.112 0.888 28 H 0.127 0.873 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.053 0.947 37 H -0.010 1.010 38 H 0.045 0.955 39 H 0.249 0.751 40 H 0.027 0.973 41 H 0.010 0.990 42 H 0.068 0.932 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.019 -8.133 -13.303 18.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.176 4.176 3 C -0.114 4.114 4 C -0.163 4.163 5 C 0.313 3.687 6 O -0.471 6.471 7 N -0.351 5.351 8 C -0.007 4.007 9 C -0.098 4.098 10 H 0.110 0.890 11 C -0.148 4.148 12 C 0.040 3.960 13 N -0.322 5.322 14 C -0.411 4.411 15 H 0.084 0.916 16 C -0.242 4.242 17 N -0.563 5.563 18 Si 0.787 3.213 19 H -0.191 1.191 20 H -0.219 1.219 21 H -0.219 1.219 22 C 0.048 3.952 23 C -0.115 4.115 24 H 0.113 0.887 25 C -0.007 4.007 26 H 0.110 0.890 27 H 0.130 0.870 28 H 0.144 0.856 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.125 0.875 32 H 0.138 0.862 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.008 0.992 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.045 0.955 41 H 0.028 0.972 42 H 0.086 0.914 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.173 -7.592 -13.813 18.760 hybrid contribution 0.311 0.405 1.353 1.447 sum -9.862 -7.187 -12.459 17.440 Atomic orbital electron populations 1.24043 0.96081 1.02464 1.00627 1.23000 0.96202 0.98089 1.00304 1.20445 0.97500 0.95856 0.97599 1.21646 0.99017 0.93965 1.01721 1.21068 0.78525 0.89866 0.79257 1.90669 1.67160 1.50279 1.38955 1.48841 1.39125 1.19337 1.27751 1.22250 0.93300 0.87481 0.97683 1.21969 0.98493 0.96187 0.93107 0.89002 1.21566 0.98453 1.00486 0.94309 1.19985 0.95509 0.87459 0.93092 1.42910 1.69042 1.14456 1.05774 1.19480 1.36822 0.92805 0.91998 0.91612 1.25701 0.98903 0.97061 1.02505 1.70164 1.44366 1.08691 1.33115 0.85350 0.76852 0.77991 0.81121 1.19056 1.21931 1.21905 1.19350 0.97386 0.92225 0.86222 1.21564 0.97066 0.95434 0.97389 0.88669 1.22544 0.94867 0.94782 0.88512 0.88991 0.86989 0.85561 0.91241 0.92452 0.87461 0.86237 0.91276 0.91951 0.91296 0.92785 0.99217 0.93796 0.94174 0.95489 0.97151 0.91364 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.70 14.32 67.79 0.97 -1.73 16 2 C -0.16 -2.27 9.52 25.65 0.24 -2.03 16 3 C -0.08 -1.41 4.95 29.85 0.15 -1.26 16 4 C -0.12 -2.19 4.70 29.85 0.14 -2.05 16 5 C 0.52 13.71 7.85 87.66 0.69 14.40 16 6 O -0.59 -20.09 16.32 -3.04 -0.05 -20.14 16 7 N -0.62 -15.92 3.34 -808.33 -2.70 -18.62 16 8 C 0.12 3.20 6.25 87.04 0.54 3.74 16 9 C -0.08 -2.42 3.60 -9.62 -0.03 -2.45 16 10 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 11 C -0.11 -3.91 4.83 30.20 0.15 -3.77 16 12 C 0.16 7.75 5.09 86.41 0.44 8.19 16 13 N -0.60 -28.68 3.23 -721.84 -2.33 -31.01 16 14 C -0.28 -15.07 9.27 84.03 0.78 -14.29 16 15 H 0.07 3.46 7.94 -2.91 -0.02 3.43 16 16 C -0.04 -2.46 4.95 84.86 0.42 -2.04 16 17 N -0.92 -53.17 10.89 21.65 0.24 -52.93 16 18 Si 0.96 44.14 29.62 68.60 2.03 46.17 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 20 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 22 C 0.17 6.58 5.75 85.82 0.49 7.07 16 23 C -0.10 -2.76 2.85 -10.96 -0.03 -2.79 16 24 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 25 C 0.11 2.72 5.48 86.59 0.47 3.19 16 26 H 0.09 1.33 7.84 -2.91 -0.02 1.31 16 27 H 0.11 1.20 8.06 -2.91 -0.02 1.17 16 28 H 0.13 1.39 8.06 -2.91 -0.02 1.36 16 29 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 30 H 0.06 1.23 7.75 -2.39 -0.02 1.21 16 31 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.12 1.53 7.87 -2.38 -0.02 1.51 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 1.80 7.78 -2.39 -0.02 1.78 16 35 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.05 1.84 6.68 -2.39 -0.02 1.82 16 37 H -0.01 -0.53 8.11 -2.39 -0.02 -0.55 16 38 H 0.04 2.42 5.79 -2.38 -0.01 2.40 16 39 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 40 H 0.03 0.97 7.81 -2.39 -0.02 0.95 16 41 H 0.01 0.42 8.13 -2.39 -0.02 0.40 16 42 H 0.07 1.78 7.21 -2.39 -0.02 1.76 16 43 H 0.11 1.88 7.51 -2.39 -0.02 1.86 16 Total: -1.00 -66.30 337.77 3.57 -62.73 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.96 Total: 9.61 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 5.42 Total: 4.19 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -4.79 Total: -102.56 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.05 Total: -20.14 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -66.30 3.57 -62.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566040383.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.624 kcal (2) G-P(sol) polarization free energy of solvation -66.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds