Wall clock time and date at job start Tue Mar 31 2020 00:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47011 * 2 1 4 4 C 1.47198 * 109.46952 * 119.99885 * 2 1 3 5 5 C 2.64600 * 109.46848 * 119.99736 * 2 1 3 6 6 C 4.07800 * 109.46931 * 119.99728 * 2 1 3 7 7 O 1.21620 * 119.99976 * 202.47396 * 6 5 4 8 8 N 1.34771 * 120.00089 * 22.47639 * 6 5 4 9 9 C 1.46496 * 120.00242 * 359.97438 * 8 6 5 10 10 C 1.46506 * 119.99994 * 180.02562 * 8 6 5 11 11 C 1.53043 * 109.45594 * 299.99896 * 10 8 6 12 12 C 1.53196 * 109.31318 * 181.38792 * 11 10 8 13 13 N 1.46922 * 108.88838 * 305.29377 * 12 11 10 14 14 C 1.36945 * 120.62848 * 233.67928 * 13 12 11 15 15 H 1.07999 * 120.00157 * 152.59545 * 14 13 12 16 16 C 1.38807 * 119.99756 * 332.59583 * 14 13 12 17 17 N 1.31622 * 120.00269 * 159.34768 * 16 14 13 18 18 Si 1.86806 * 120.00102 * 339.34630 * 16 14 13 19 19 H 1.48494 * 109.47076 * 92.96261 * 18 16 14 20 20 H 1.48500 * 109.46865 * 212.95938 * 18 16 14 21 21 H 1.48497 * 109.47109 * 332.95955 * 18 16 14 22 22 C 1.47204 * 118.56120 * 53.53831 * 13 12 11 23 23 C 1.53035 * 109.46051 * 60.06319 * 10 8 6 24 24 H 1.09004 * 109.47284 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47374 * 300.00249 * 1 2 3 26 26 H 1.09006 * 109.46993 * 60.00407 * 1 2 3 27 27 H 1.09001 * 109.47234 * 239.99673 * 2 1 3 28 28 H 1.09001 * 109.47241 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47086 * 299.99250 * 3 2 1 30 30 H 1.08991 * 109.47255 * 59.99678 * 3 2 1 31 31 H 1.09000 * 109.47440 * 270.00307 * 9 8 6 32 32 H 1.09002 * 109.46743 * 30.00196 * 9 8 6 33 33 H 1.09006 * 109.47234 * 149.99899 * 9 8 6 34 34 H 1.08996 * 109.45017 * 180.02562 * 10 8 6 35 35 H 1.08992 * 109.50251 * 61.43172 * 11 10 8 36 36 H 1.09005 * 109.52118 * 301.34945 * 11 10 8 37 37 H 1.08997 * 109.58552 * 65.14377 * 12 11 10 38 38 H 1.08990 * 109.58871 * 185.43060 * 12 11 10 39 39 H 0.96991 * 120.00110 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.53802 * 186.67718 * 22 13 12 41 41 H 1.09001 * 109.67896 * 66.36810 * 22 13 12 42 42 H 1.09002 * 109.49752 * 298.56668 * 23 10 8 43 43 H 1.08995 * 109.49730 * 58.63183 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6939 1.2019 5 6 2.4119 -1.2473 2.1605 6 6 2.8892 -1.9223 3.3298 7 8 3.6967 -1.3785 4.0588 8 7 2.4436 -3.1601 3.6224 9 6 1.4705 -3.8149 2.7447 10 6 2.9316 -3.8504 4.8190 11 6 4.4503 -4.0157 4.7284 12 6 4.9527 -4.7684 5.9646 13 7 4.4961 -4.0624 7.1694 14 6 5.3888 -3.6829 8.1361 15 1 5.1765 -2.8286 8.7618 16 6 6.5666 -4.3962 8.3117 17 7 7.5900 -3.8370 8.9217 18 14 6.6990 -6.1500 7.6822 19 1 7.2734 -6.1423 6.3128 20 1 7.5802 -6.9344 8.5841 21 1 5.3489 -6.7674 7.6493 22 6 3.0605 -3.7700 7.3123 23 6 2.5794 -3.0286 6.0610 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9563 0.8899 31 1 0.4610 -3.5710 3.0755 32 1 1.6118 -3.4662 1.7217 33 1 1.6149 -4.8946 2.7837 34 1 2.4628 -4.8320 4.8882 35 1 4.9213 -3.0338 4.6841 36 1 4.7024 -4.5809 3.8311 37 1 4.5534 -5.7826 5.9621 38 1 6.0419 -4.8045 5.9528 39 1 8.4131 -4.3353 9.0441 40 1 2.9014 -3.1450 8.1911 41 1 2.5052 -4.7016 7.4211 42 1 3.0680 -2.0558 6.0042 43 1 1.4994 -2.8908 6.1119 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566608581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:15 Heat of formation + Delta-G solvation = 39.897274 kcal Electronic energy + Delta-G solvation = -21916.590941 eV Core-core repulsion = 18771.109858 eV Total energy + Delta-G solvation = -3145.481082 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.12060 -37.34475 -36.62329 -35.25823 -32.79932 -31.81763 -30.36084 -30.23160 -27.59202 -26.81941 -25.57609 -23.64078 -22.74290 -22.21030 -20.74637 -19.66597 -17.55401 -16.82042 -16.25895 -15.97077 -15.38146 -15.03605 -14.86616 -14.17946 -14.03315 -13.88373 -13.62649 -13.31356 -13.01621 -12.79586 -12.68761 -12.64159 -12.34024 -12.17477 -11.86231 -11.82441 -11.76597 -11.67498 -11.18449 -10.76499 -10.52210 -10.47543 -10.27216 -10.18467 -10.02600 -9.78972 -9.51086 -9.38498 -8.56903 -8.46625 -6.89859 -5.86008 -3.21021 1.58795 2.21656 2.99364 3.37811 3.52563 3.55813 3.57370 3.89284 4.58135 4.60414 4.69919 4.72410 4.95981 5.01814 5.09057 5.21154 5.23396 5.32360 5.39711 5.41727 5.46679 5.53078 5.53840 5.60815 5.65442 5.78666 5.84230 5.96329 6.06490 6.14928 6.24567 6.34395 6.46355 6.68690 6.70164 6.79824 6.93842 7.07587 7.14627 7.47274 8.04796 8.23404 8.42069 9.02352 9.80643 10.18403 11.30268 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031765 B = 0.003787 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.266071 B = 7392.652291 C = 7617.389191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.011 3.989 3 C -0.148 4.148 4 C -0.095 4.095 5 C -0.207 4.207 6 C 0.623 3.377 7 O -0.501 6.501 8 N -0.605 5.605 9 C 0.080 3.920 10 C 0.161 3.839 11 C -0.151 4.151 12 C 0.131 3.869 13 N -0.604 5.604 14 C -0.254 4.254 15 H 0.085 0.915 16 C 0.021 3.979 17 N -0.909 5.909 18 Si 0.883 3.117 19 H -0.289 1.289 20 H -0.304 1.304 21 H -0.271 1.271 22 C 0.154 3.846 23 C -0.151 4.151 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.023 0.977 38 H 0.075 0.925 39 H 0.262 0.738 40 H 0.066 0.934 41 H 0.022 0.978 42 H 0.086 0.914 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.701 3.149 -19.878 26.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.007 4.007 3 C -0.205 4.205 4 C -0.097 4.097 5 C -0.210 4.210 6 C 0.410 3.590 7 O -0.376 6.376 8 N -0.338 5.338 9 C -0.063 4.063 10 C 0.059 3.941 11 C -0.191 4.191 12 C 0.005 3.995 13 N -0.328 5.328 14 C -0.383 4.383 15 H 0.103 0.897 16 C -0.177 4.177 17 N -0.553 5.553 18 Si 0.713 3.287 19 H -0.217 1.217 20 H -0.232 1.232 21 H -0.196 1.196 22 C 0.027 3.973 23 C -0.191 4.191 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.040 0.960 42 H 0.105 0.895 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.104 3.403 -19.359 25.411 hybrid contribution 0.143 -1.103 -0.475 1.209 sum -15.961 2.300 -19.834 25.562 Atomic orbital electron populations 1.21837 0.92894 1.02700 1.02810 1.18457 0.96104 0.95282 0.90839 1.21857 1.01948 0.93965 1.02732 1.22560 0.96016 0.97098 0.94075 1.20974 1.02365 1.01268 0.96370 1.14831 0.81211 0.80890 0.82038 1.90903 1.32164 1.65583 1.48999 1.48007 1.43825 1.15547 1.26450 1.21778 0.92054 0.98394 0.94071 1.21158 0.95391 0.94705 0.82829 1.22498 0.94426 1.03477 0.98663 1.21298 0.99222 0.93356 0.85660 1.44405 1.02352 1.67838 1.18157 1.18927 0.98482 1.09197 1.11667 0.89718 1.25270 0.96162 0.98091 0.98199 1.69848 1.02672 1.36490 1.46257 0.86936 0.77421 0.87421 0.76887 1.21694 1.23238 1.19575 1.20905 0.84795 0.96470 0.95099 1.22474 0.99521 1.01927 0.95153 0.92020 0.91974 0.91270 0.88261 0.91874 0.91336 0.91912 0.92622 0.91399 0.90728 0.89896 0.89296 0.93065 0.95889 0.90742 0.92859 0.91586 0.96020 0.89508 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.15 37.16 0.34 -0.49 16 2 C 0.01 0.08 3.30 -93.41 -0.31 -0.23 16 3 C -0.15 -1.01 9.15 37.16 0.34 -0.67 16 4 C -0.10 -1.08 12.56 -37.12 -0.47 -1.55 16 5 C -0.21 -2.95 11.70 -38.84 -0.45 -3.41 16 6 C 0.62 10.62 6.95 -14.34 -0.10 10.52 16 7 O -0.50 -10.69 13.32 5.26 0.07 -10.62 16 8 N -0.61 -8.93 2.82 -176.76 -0.50 -9.43 16 9 C 0.08 0.80 10.22 59.84 0.61 1.42 16 10 C 0.16 2.70 2.51 -67.89 -0.17 2.53 16 11 C -0.15 -2.98 5.27 -26.61 -0.14 -3.13 16 12 C 0.13 3.01 4.20 -3.71 -0.02 2.99 16 13 N -0.60 -15.13 2.78 -172.10 -0.48 -15.61 16 14 C -0.25 -7.46 10.05 -15.06 -0.15 -7.61 16 15 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 16 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 17 N -0.91 -28.93 13.97 55.49 0.78 -28.15 16 18 Si 0.88 23.02 24.35 -169.99 -4.14 18.88 16 19 H -0.29 -7.30 6.62 56.52 0.37 -6.93 16 20 H -0.30 -8.03 7.11 56.52 0.40 -7.62 16 21 H -0.27 -6.84 6.64 56.52 0.38 -6.47 16 22 C 0.15 3.17 6.53 -3.56 -0.02 3.15 16 23 C -0.15 -2.77 5.27 -26.61 -0.14 -2.91 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.61 6.89 -51.93 -0.36 0.26 16 33 H 0.07 0.63 7.92 -51.93 -0.41 0.22 16 34 H 0.08 1.23 7.79 -51.93 -0.40 0.82 16 35 H 0.09 2.04 6.20 -51.93 -0.32 1.72 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.02 0.51 7.08 -51.93 -0.37 0.14 16 38 H 0.07 1.89 4.49 -51.93 -0.23 1.65 16 39 H 0.26 7.87 8.31 -40.82 -0.34 7.54 16 40 H 0.07 1.37 7.94 -51.93 -0.41 0.95 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 1.87 6.21 -51.93 -0.32 1.54 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 340.12 15.07 5.13 5.13 Total: -1.00 -34.74 340.12 -7.01 -41.75 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -7.09 Total: -3.12 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -0.77 Total: 1.17 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.20 Total: -53.19 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.07 Total: -10.62 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.14 Total: 18.88 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.74 -7.01 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566608581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.645 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds