Wall clock time and date at job start Tue Mar 31 2020 00:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47011 * 2 1 4 4 C 1.47198 * 109.46952 * 119.99885 * 2 1 3 5 5 C 2.64600 * 109.46848 * 119.99736 * 2 1 3 6 6 C 4.07800 * 109.46931 * 119.99728 * 2 1 3 7 7 O 1.21620 * 119.99976 * 202.47396 * 6 5 4 8 8 N 1.34771 * 120.00089 * 22.47639 * 6 5 4 9 9 C 1.46496 * 120.00242 * 359.97438 * 8 6 5 10 10 C 1.46506 * 119.99994 * 180.02562 * 8 6 5 11 11 C 1.53043 * 109.45594 * 299.99896 * 10 8 6 12 12 C 1.53196 * 109.31318 * 181.38792 * 11 10 8 13 13 N 1.46922 * 108.88838 * 305.29377 * 12 11 10 14 14 C 1.36945 * 120.62848 * 233.67928 * 13 12 11 15 15 H 1.07999 * 120.00157 * 152.59545 * 14 13 12 16 16 C 1.38807 * 119.99756 * 332.59583 * 14 13 12 17 17 N 1.31622 * 120.00269 * 159.34768 * 16 14 13 18 18 Si 1.86806 * 120.00102 * 339.34630 * 16 14 13 19 19 H 1.48494 * 109.47076 * 92.96261 * 18 16 14 20 20 H 1.48500 * 109.46865 * 212.95938 * 18 16 14 21 21 H 1.48497 * 109.47109 * 332.95955 * 18 16 14 22 22 C 1.47204 * 118.56120 * 53.53831 * 13 12 11 23 23 C 1.53035 * 109.46051 * 60.06319 * 10 8 6 24 24 H 1.09004 * 109.47284 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47374 * 300.00249 * 1 2 3 26 26 H 1.09006 * 109.46993 * 60.00407 * 1 2 3 27 27 H 1.09001 * 109.47234 * 239.99673 * 2 1 3 28 28 H 1.09001 * 109.47241 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47086 * 299.99250 * 3 2 1 30 30 H 1.08991 * 109.47255 * 59.99678 * 3 2 1 31 31 H 1.09000 * 109.47440 * 270.00307 * 9 8 6 32 32 H 1.09002 * 109.46743 * 30.00196 * 9 8 6 33 33 H 1.09006 * 109.47234 * 149.99899 * 9 8 6 34 34 H 1.08996 * 109.45017 * 180.02562 * 10 8 6 35 35 H 1.08992 * 109.50251 * 61.43172 * 11 10 8 36 36 H 1.09005 * 109.52118 * 301.34945 * 11 10 8 37 37 H 1.08997 * 109.58552 * 65.14377 * 12 11 10 38 38 H 1.08990 * 109.58871 * 185.43060 * 12 11 10 39 39 H 0.96991 * 120.00110 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.53802 * 186.67718 * 22 13 12 41 41 H 1.09001 * 109.67896 * 66.36810 * 22 13 12 42 42 H 1.09002 * 109.49752 * 298.56668 * 23 10 8 43 43 H 1.08995 * 109.49730 * 58.63183 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6939 1.2019 5 6 2.4119 -1.2473 2.1605 6 6 2.8892 -1.9223 3.3298 7 8 3.6967 -1.3785 4.0588 8 7 2.4436 -3.1601 3.6224 9 6 1.4705 -3.8149 2.7447 10 6 2.9316 -3.8504 4.8190 11 6 4.4503 -4.0157 4.7284 12 6 4.9527 -4.7684 5.9646 13 7 4.4961 -4.0624 7.1694 14 6 5.3888 -3.6829 8.1361 15 1 5.1765 -2.8286 8.7618 16 6 6.5666 -4.3962 8.3117 17 7 7.5900 -3.8370 8.9217 18 14 6.6990 -6.1500 7.6822 19 1 7.2734 -6.1423 6.3128 20 1 7.5802 -6.9344 8.5841 21 1 5.3489 -6.7674 7.6493 22 6 3.0605 -3.7700 7.3123 23 6 2.5794 -3.0286 6.0610 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9563 0.8899 31 1 0.4610 -3.5710 3.0755 32 1 1.6118 -3.4662 1.7217 33 1 1.6149 -4.8946 2.7837 34 1 2.4628 -4.8320 4.8882 35 1 4.9213 -3.0338 4.6841 36 1 4.7024 -4.5809 3.8311 37 1 4.5534 -5.7826 5.9621 38 1 6.0419 -4.8045 5.9528 39 1 8.4131 -4.3353 9.0441 40 1 2.9014 -3.1450 8.1911 41 1 2.5052 -4.7016 7.4211 42 1 3.0680 -2.0558 6.0042 43 1 1.4994 -2.8908 6.1119 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566608581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:14 Heat of formation + Delta-G solvation = 16.819912 kcal Electronic energy + Delta-G solvation = -21917.591650 eV Core-core repulsion = 18771.109858 eV Total energy + Delta-G solvation = -3146.481792 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.42230 -38.96353 -37.32948 -36.64613 -34.55770 -33.14432 -31.98720 -31.91347 -28.06257 -27.86900 -27.19497 -25.04720 -24.34051 -23.53512 -22.00420 -21.15830 -19.09823 -18.38394 -17.60768 -17.08059 -16.82122 -16.51522 -15.88604 -15.61207 -15.37920 -15.27020 -14.87478 -14.82491 -14.42335 -14.17447 -13.88388 -13.77031 -13.47717 -13.24589 -13.11284 -12.92037 -12.82692 -12.56931 -12.43251 -12.32909 -12.22170 -12.06107 -11.76039 -11.55593 -11.42453 -11.30828 -11.18599 -10.92908 -10.72649 -9.72035 -8.95632 -8.16851 -5.49258 0.50275 1.23560 1.30591 1.40534 1.51682 1.90127 2.42678 2.46159 2.98884 3.02077 3.35908 3.73994 3.93151 4.04914 4.08012 4.16248 4.18121 4.27529 4.32613 4.46366 4.48199 4.60658 4.63538 4.69361 4.75223 4.78367 4.85636 4.90585 4.92439 4.96381 4.97506 5.06737 5.11155 5.29937 5.31744 5.35862 5.40527 5.61805 5.85077 6.11049 6.18832 6.29393 6.90304 7.01798 7.61098 8.01011 9.03631 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031765 B = 0.003787 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.266071 B = 7392.652291 C = 7617.389191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.006 3.994 3 C -0.149 4.149 4 C -0.049 4.049 5 C -0.266 4.266 6 C 0.618 3.382 7 O -0.563 6.563 8 N -0.599 5.599 9 C 0.075 3.925 10 C 0.166 3.834 11 C -0.143 4.143 12 C 0.127 3.873 13 N -0.621 5.621 14 C -0.251 4.251 15 H 0.042 0.958 16 C -0.042 4.042 17 N -0.962 5.962 18 Si 0.956 3.044 19 H -0.277 1.277 20 H -0.309 1.309 21 H -0.248 1.248 22 C 0.150 3.850 23 C -0.141 4.141 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.093 0.907 27 H 0.127 0.873 28 H 0.051 0.949 29 H 0.097 0.903 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.045 0.955 39 H 0.262 0.738 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.877 1.055 -23.487 30.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.011 4.011 3 C -0.206 4.206 4 C -0.052 4.052 5 C -0.269 4.269 6 C 0.407 3.593 7 O -0.444 6.444 8 N -0.329 5.329 9 C -0.067 4.067 10 C 0.063 3.937 11 C -0.183 4.183 12 C 0.002 3.998 13 N -0.346 5.346 14 C -0.381 4.381 15 H 0.059 0.941 16 C -0.236 4.236 17 N -0.609 5.609 18 Si 0.784 3.216 19 H -0.203 1.203 20 H -0.238 1.238 21 H -0.172 1.172 22 C 0.025 3.975 23 C -0.181 4.181 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.112 0.888 27 H 0.144 0.856 28 H 0.070 0.930 29 H 0.115 0.885 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.140 0.860 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.365 1.281 -23.026 30.114 hybrid contribution 1.041 -0.277 0.554 1.212 sum -18.324 1.004 -22.471 29.013 Atomic orbital electron populations 1.21846 0.91146 1.03358 1.03570 1.18871 0.97415 0.95174 0.89668 1.21891 1.01279 0.93825 1.03613 1.23484 0.93333 0.94768 0.93581 1.20654 1.05184 1.03745 0.97283 1.15222 0.80397 0.81420 0.82234 1.90878 1.35056 1.67207 1.51217 1.47987 1.43940 1.14826 1.26194 1.22101 0.91508 0.99401 0.93648 1.21032 0.93513 0.96154 0.82961 1.22322 0.96672 1.01076 0.98202 1.21366 0.97770 0.94778 0.85921 1.44530 1.03615 1.68332 1.18077 1.18833 0.99512 1.07827 1.11909 0.94062 1.26019 0.95621 1.02553 0.99450 1.70006 1.03455 1.38236 1.49156 0.85751 0.78277 0.81015 0.76540 1.20349 1.23805 1.17176 1.21088 0.82689 0.97869 0.95842 1.22298 1.00816 0.99799 0.95138 0.91443 0.93004 0.88800 0.85580 0.93022 0.88470 0.93094 0.90791 0.90446 0.88282 0.86002 0.93462 0.90459 0.93062 0.93673 0.92956 0.93040 0.92656 0.93654 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.15 71.98 0.66 -0.44 16 2 C 0.01 0.07 3.30 -12.60 -0.04 0.03 16 3 C -0.15 -1.68 9.15 71.98 0.66 -1.02 16 4 C -0.05 -1.03 12.56 31.12 0.39 -0.64 16 5 C -0.27 -7.44 11.70 30.01 0.35 -7.09 16 6 C 0.62 21.25 6.95 85.49 0.59 21.85 16 7 O -0.56 -25.54 13.32 -4.09 -0.05 -25.59 16 8 N -0.60 -16.43 2.82 -831.40 -2.35 -18.78 16 9 C 0.07 1.19 10.22 127.77 1.31 2.50 16 10 C 0.17 5.17 2.51 45.02 0.11 5.29 16 11 C -0.14 -5.53 5.27 30.67 0.16 -5.36 16 12 C 0.13 5.67 4.20 86.36 0.36 6.03 16 13 N -0.62 -31.33 2.78 -698.39 -1.94 -33.27 16 14 C -0.25 -15.39 10.05 84.03 0.84 -14.55 16 15 H 0.04 2.80 8.06 -2.91 -0.02 2.78 16 16 C -0.04 -2.63 5.23 84.86 0.44 -2.18 16 17 N -0.96 -64.12 13.97 21.65 0.30 -63.81 16 18 Si 0.96 48.14 24.35 68.60 1.67 49.81 16 19 H -0.28 -13.26 6.62 99.48 0.66 -12.60 16 20 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 21 H -0.25 -11.46 6.64 99.48 0.66 -10.80 16 22 C 0.15 6.10 6.53 86.31 0.56 6.66 16 23 C -0.14 -5.05 5.27 30.67 0.16 -4.89 16 24 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 25 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 27 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.12 6.89 -2.39 -0.02 1.10 16 33 H 0.10 1.14 7.92 -2.38 -0.02 1.12 16 34 H 0.12 2.95 7.79 -2.39 -0.02 2.93 16 35 H 0.05 2.25 6.20 -2.39 -0.01 2.23 16 36 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 37 H 0.05 2.03 7.08 -2.39 -0.02 2.01 16 38 H 0.05 2.27 4.49 -2.39 -0.01 2.26 16 39 H 0.26 16.43 8.31 -92.72 -0.77 15.66 16 40 H 0.05 2.19 7.94 -2.39 -0.02 2.17 16 41 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.04 2.03 6.21 -2.39 -0.01 2.02 16 43 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -82.83 340.12 5.08 -77.74 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.89 Total: 7.72 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 6.57 Total: 6.17 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -3.99 Total: -115.86 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.05 Total: -25.59 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 1.67 Total: 49.81 kcal Total: -82.83 5.08 -77.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566608581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.564 kcal (2) G-P(sol) polarization free energy of solvation -82.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds