Wall clock time and date at job start Tue Mar 31 2020 00:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47119 * 2 1 4 4 C 1.47200 * 109.47140 * 120.00348 * 2 1 3 5 5 C 2.64594 * 109.47238 * 120.00412 * 2 1 3 6 6 C 4.07800 * 109.47309 * 120.00377 * 2 1 3 7 7 O 1.21608 * 119.99784 * 235.39157 * 6 5 4 8 8 N 1.34773 * 119.99573 * 55.39346 * 6 5 4 9 9 C 1.46508 * 119.99748 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47345 * 179.97438 * 9 8 6 11 11 H 1.09005 * 109.49524 * 54.93727 * 10 9 8 12 12 C 1.53034 * 109.49925 * 175.00343 * 10 9 8 13 13 C 1.53032 * 109.53943 * 181.31958 * 12 10 9 14 14 C 1.53189 * 109.31176 * 298.63164 * 13 12 10 15 15 N 1.46926 * 108.77529 * 54.63837 * 14 13 12 16 16 C 1.36937 * 120.63451 * 126.41522 * 15 14 13 17 17 H 1.08004 * 119.99716 * 332.76053 * 16 15 14 18 18 C 1.38812 * 120.00393 * 152.76560 * 16 15 14 19 19 N 1.31615 * 120.00145 * 159.74296 * 18 16 15 20 20 Si 1.86801 * 119.99641 * 339.74406 * 18 16 15 21 21 H 1.48506 * 109.47035 * 94.90439 * 20 18 16 22 22 H 1.48500 * 109.46920 * 214.90350 * 20 18 16 23 23 H 1.48492 * 109.47145 * 334.90260 * 20 18 16 24 24 C 1.46928 * 118.73412 * 306.38936 * 15 14 13 25 25 H 1.09005 * 109.46824 * 299.99862 * 1 2 3 26 26 H 1.09002 * 109.47356 * 59.99453 * 1 2 3 27 27 H 1.08999 * 109.47180 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46791 * 240.00694 * 2 1 3 29 29 H 1.09005 * 109.47160 * 60.00343 * 3 2 1 30 30 H 1.09000 * 109.47268 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47453 * 300.00487 * 3 2 1 32 32 H 0.96998 * 120.00895 * 359.97438 * 8 6 5 33 33 H 1.09010 * 109.46540 * 60.00204 * 9 8 6 34 34 H 1.08996 * 109.46820 * 300.00409 * 9 8 6 35 35 H 1.09005 * 109.45740 * 301.33971 * 12 10 9 36 36 H 1.08996 * 109.45994 * 61.30607 * 12 10 9 37 37 H 1.09006 * 109.49725 * 58.58454 * 13 12 10 38 38 H 1.09004 * 109.49712 * 178.64874 * 13 12 10 39 39 H 1.09004 * 109.58649 * 174.42320 * 14 13 12 40 40 H 1.08998 * 109.58909 * 294.84967 * 14 13 12 41 41 H 0.96996 * 120.00113 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.58806 * 293.81860 * 24 15 14 43 43 H 1.09004 * 109.58324 * 173.39713 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6940 1.2018 5 6 2.4120 -1.2475 2.1603 6 6 2.8894 -1.9226 3.3295 7 8 3.1719 -1.2860 4.3264 8 7 3.0257 -3.2634 3.3249 9 6 3.5147 -3.9541 4.5209 10 6 3.5748 -5.4591 4.2520 11 1 4.1786 -5.6461 3.3639 12 6 4.2017 -6.1682 5.4545 13 6 4.2924 -7.6697 5.1732 14 6 2.8830 -8.2315 4.9614 15 7 2.2199 -7.4582 3.9026 16 6 1.6701 -8.0884 2.8183 17 1 2.0642 -9.0384 2.4888 18 6 0.6064 -7.5063 2.1427 19 7 0.3329 -7.8701 0.9077 20 14 -0.4369 -6.2066 2.9863 21 1 0.0698 -4.8570 2.6298 22 1 -1.8476 -6.3390 2.5417 23 1 -0.3624 -6.3906 4.4579 24 6 2.1573 -5.9957 4.0297 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6767 1.9563 0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 2.8001 -3.7712 2.5299 33 1 2.8386 -3.7609 5.3539 34 1 4.5111 -3.5889 4.7694 35 1 5.2013 -5.7705 5.6300 36 1 3.5843 -6.0009 6.3371 37 1 4.8891 -7.8364 4.2763 38 1 4.7608 -8.1709 6.0202 39 1 2.9478 -9.2780 4.6635 40 1 2.3132 -8.1474 5.8868 41 1 -0.4101 -7.4631 0.4355 42 1 1.5283 -5.7293 4.8791 43 1 1.7432 -5.5671 3.1171 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566867946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:22 Heat of formation + Delta-G solvation = 16.702151 kcal Electronic energy + Delta-G solvation = -21648.029739 eV Core-core repulsion = 18501.542840 eV Total energy + Delta-G solvation = -3146.486898 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.66539 -38.08844 -36.55583 -34.86580 -33.15395 -32.14699 -31.01515 -30.50931 -27.47322 -26.28211 -25.33021 -23.78700 -22.50938 -21.46433 -20.92617 -19.53007 -18.47800 -16.88122 -16.36326 -15.93247 -15.66320 -15.09582 -14.87809 -14.29194 -14.10086 -13.94392 -13.71783 -13.35333 -13.31719 -12.90446 -12.54585 -12.50137 -12.24499 -12.12765 -11.76350 -11.67286 -11.63091 -11.49361 -10.84859 -10.67151 -10.60556 -10.42837 -10.35826 -10.15333 -10.14415 -9.89679 -9.73786 -9.49547 -8.99353 -8.67330 -7.02208 -6.00317 -3.35988 1.59477 2.29144 3.16468 3.25239 3.44370 3.47027 3.57621 4.16497 4.46525 4.69391 4.77383 4.83470 4.89838 5.12992 5.20532 5.25386 5.30778 5.33054 5.40282 5.50778 5.57842 5.58847 5.69077 5.78577 5.82022 5.90789 5.95471 6.00048 6.07288 6.09698 6.27175 6.30831 6.43392 6.52695 6.54642 6.65988 6.68082 6.93832 7.21101 7.52037 7.90883 8.17702 8.27909 8.89084 9.66696 10.05076 11.15535 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014980 B = 0.005195 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.704757 B = 5388.820635 C = 6788.444297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.008 3.992 3 C -0.146 4.146 4 C -0.077 4.077 5 C -0.222 4.222 6 C 0.632 3.368 7 O -0.533 6.533 8 N -0.711 5.711 9 C 0.126 3.874 10 C -0.120 4.120 11 H 0.081 0.919 12 C -0.100 4.100 13 C -0.135 4.135 14 C 0.146 3.854 15 N -0.606 5.606 16 C -0.259 4.259 17 H 0.087 0.913 18 C 0.024 3.976 19 N -0.907 5.907 20 Si 0.878 3.122 21 H -0.289 1.289 22 H -0.303 1.303 23 H -0.270 1.270 24 C 0.133 3.867 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.409 0.591 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.022 0.978 41 H 0.262 0.738 42 H 0.027 0.973 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.950 12.578 0.875 13.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.010 4.010 3 C -0.203 4.203 4 C -0.080 4.080 5 C -0.225 4.225 6 C 0.419 3.581 7 O -0.412 6.412 8 N -0.362 5.362 9 C 0.002 3.998 10 C -0.141 4.141 11 H 0.100 0.900 12 C -0.139 4.139 13 C -0.174 4.174 14 C 0.020 3.980 15 N -0.329 5.329 16 C -0.388 4.388 17 H 0.104 0.896 18 C -0.175 4.175 19 N -0.550 5.550 20 Si 0.709 3.291 21 H -0.217 1.217 22 H -0.231 1.231 23 H -0.195 1.195 24 C 0.007 3.993 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.245 0.755 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.072 0.928 42 H 0.045 0.955 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.037 12.966 1.470 13.988 hybrid contribution -0.827 0.472 -0.023 0.953 sum 4.210 13.439 1.447 14.157 Atomic orbital electron populations 1.21855 0.92688 1.03187 1.02765 1.18519 0.96372 0.95193 0.90918 1.21848 1.01686 0.93999 1.02763 1.22614 0.93891 0.97140 0.94319 1.20756 1.04126 1.01505 0.96076 1.14680 0.77586 0.81809 0.84056 1.90820 1.50597 1.66454 1.33293 1.45980 1.66218 1.06126 1.17903 1.21550 0.99542 0.91951 0.86754 1.21995 1.00689 0.91539 0.99856 0.90036 1.21340 0.99602 0.95945 0.96975 1.21990 0.99480 0.95098 1.00795 1.20964 0.90664 0.95418 0.90925 1.44342 1.66142 1.00013 1.22407 1.18956 1.10599 1.06458 1.02744 0.89569 1.25263 0.97614 0.98424 0.96189 1.69827 1.30778 1.45042 1.09395 0.87029 0.80154 0.81187 0.80770 1.21700 1.23099 1.19506 1.21383 0.92950 0.85354 0.99604 0.92010 0.91105 0.91667 0.87933 0.91979 0.92017 0.91235 0.75525 0.91245 0.91173 0.92658 0.92246 0.91923 0.92516 0.91893 0.95966 0.92770 0.95473 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.15 37.16 0.34 -0.97 16 2 C 0.01 0.08 3.30 -93.41 -0.31 -0.23 16 3 C -0.15 -1.14 9.15 37.16 0.34 -0.80 16 4 C -0.08 -1.05 12.56 -37.12 -0.47 -1.52 16 5 C -0.22 -3.56 13.61 -38.83 -0.53 -4.09 16 6 C 0.63 11.07 7.65 -14.33 -0.11 10.96 16 7 O -0.53 -10.62 17.08 5.27 0.09 -10.53 16 8 N -0.71 -11.67 5.32 -62.76 -0.33 -12.01 16 9 C 0.13 1.95 5.07 -4.04 -0.02 1.93 16 10 C -0.12 -2.00 2.37 -90.51 -0.21 -2.21 16 11 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 12 C -0.10 -1.47 5.17 -26.70 -0.14 -1.61 16 13 C -0.13 -2.09 6.08 -26.62 -0.16 -2.25 16 14 C 0.15 2.79 6.52 -3.71 -0.02 2.76 16 15 N -0.61 -13.99 2.77 -172.32 -0.48 -14.47 16 16 C -0.26 -7.08 10.04 -15.06 -0.15 -7.24 16 17 H 0.09 2.51 8.06 -52.48 -0.42 2.09 16 18 C 0.02 0.68 5.24 -17.43 -0.09 0.59 16 19 N -0.91 -27.20 13.97 55.49 0.78 -26.42 16 20 Si 0.88 22.12 24.35 -169.99 -4.14 17.98 16 21 H -0.29 -6.95 6.70 56.52 0.38 -6.57 16 22 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 23 H -0.27 -6.78 6.45 56.52 0.36 -6.41 16 24 C 0.13 2.78 3.28 -3.71 -0.01 2.77 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.41 6.62 7.67 -40.82 -0.31 6.31 16 33 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.03 0.59 6.98 -51.93 -0.36 0.22 16 43 H 0.07 1.56 3.71 -51.93 -0.19 1.37 16 LS Contribution 347.73 15.07 5.24 5.24 Total: -1.00 -32.14 347.73 -7.63 -39.77 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -7.24 Total: 2.33 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -1.55 Total: -1.90 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.04 Total: -52.90 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.14 -7.63 -39.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566867946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.477 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds