Wall clock time and date at job start Tue Mar 31 2020 00:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47119 * 2 1 4 4 C 1.47200 * 109.47140 * 120.00348 * 2 1 3 5 5 C 2.64594 * 109.47238 * 120.00412 * 2 1 3 6 6 C 4.07800 * 109.47309 * 120.00377 * 2 1 3 7 7 O 1.21608 * 119.99784 * 235.39157 * 6 5 4 8 8 N 1.34773 * 119.99573 * 55.39346 * 6 5 4 9 9 C 1.46508 * 119.99748 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47345 * 179.97438 * 9 8 6 11 11 H 1.09005 * 109.49524 * 54.93727 * 10 9 8 12 12 C 1.53034 * 109.49925 * 175.00343 * 10 9 8 13 13 C 1.53032 * 109.53943 * 181.31958 * 12 10 9 14 14 C 1.53189 * 109.31176 * 298.63164 * 13 12 10 15 15 N 1.46926 * 108.77529 * 54.63837 * 14 13 12 16 16 C 1.36937 * 120.63451 * 126.41522 * 15 14 13 17 17 H 1.08004 * 119.99716 * 332.76053 * 16 15 14 18 18 C 1.38812 * 120.00393 * 152.76560 * 16 15 14 19 19 N 1.31615 * 120.00145 * 159.74296 * 18 16 15 20 20 Si 1.86801 * 119.99641 * 339.74406 * 18 16 15 21 21 H 1.48506 * 109.47035 * 94.90439 * 20 18 16 22 22 H 1.48500 * 109.46920 * 214.90350 * 20 18 16 23 23 H 1.48492 * 109.47145 * 334.90260 * 20 18 16 24 24 C 1.46928 * 118.73412 * 306.38936 * 15 14 13 25 25 H 1.09005 * 109.46824 * 299.99862 * 1 2 3 26 26 H 1.09002 * 109.47356 * 59.99453 * 1 2 3 27 27 H 1.08999 * 109.47180 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46791 * 240.00694 * 2 1 3 29 29 H 1.09005 * 109.47160 * 60.00343 * 3 2 1 30 30 H 1.09000 * 109.47268 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47453 * 300.00487 * 3 2 1 32 32 H 0.96998 * 120.00895 * 359.97438 * 8 6 5 33 33 H 1.09010 * 109.46540 * 60.00204 * 9 8 6 34 34 H 1.08996 * 109.46820 * 300.00409 * 9 8 6 35 35 H 1.09005 * 109.45740 * 301.33971 * 12 10 9 36 36 H 1.08996 * 109.45994 * 61.30607 * 12 10 9 37 37 H 1.09006 * 109.49725 * 58.58454 * 13 12 10 38 38 H 1.09004 * 109.49712 * 178.64874 * 13 12 10 39 39 H 1.09004 * 109.58649 * 174.42320 * 14 13 12 40 40 H 1.08998 * 109.58909 * 294.84967 * 14 13 12 41 41 H 0.96996 * 120.00113 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.58806 * 293.81860 * 24 15 14 43 43 H 1.09004 * 109.58324 * 173.39713 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6940 1.2018 5 6 2.4120 -1.2475 2.1603 6 6 2.8894 -1.9226 3.3295 7 8 3.1719 -1.2860 4.3264 8 7 3.0257 -3.2634 3.3249 9 6 3.5147 -3.9541 4.5209 10 6 3.5748 -5.4591 4.2520 11 1 4.1786 -5.6461 3.3639 12 6 4.2017 -6.1682 5.4545 13 6 4.2924 -7.6697 5.1732 14 6 2.8830 -8.2315 4.9614 15 7 2.2199 -7.4582 3.9026 16 6 1.6701 -8.0884 2.8183 17 1 2.0642 -9.0384 2.4888 18 6 0.6064 -7.5063 2.1427 19 7 0.3329 -7.8701 0.9077 20 14 -0.4369 -6.2066 2.9863 21 1 0.0698 -4.8570 2.6298 22 1 -1.8476 -6.3390 2.5417 23 1 -0.3624 -6.3906 4.4579 24 6 2.1573 -5.9957 4.0297 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6767 1.9563 0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 2.8001 -3.7712 2.5299 33 1 2.8386 -3.7609 5.3539 34 1 4.5111 -3.5889 4.7694 35 1 5.2013 -5.7705 5.6300 36 1 3.5843 -6.0009 6.3371 37 1 4.8891 -7.8364 4.2763 38 1 4.7608 -8.1709 6.0202 39 1 2.9478 -9.2780 4.6635 40 1 2.3132 -8.1474 5.8868 41 1 -0.4101 -7.4631 0.4355 42 1 1.5283 -5.7293 4.8791 43 1 1.7432 -5.5671 3.1171 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566867946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:21 Heat of formation + Delta-G solvation = -4.008303 kcal Electronic energy + Delta-G solvation = -21648.927812 eV Core-core repulsion = 18501.542840 eV Total energy + Delta-G solvation = -3147.384971 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.01648 -39.58945 -37.39655 -36.34647 -34.88765 -33.35935 -32.70824 -31.97720 -28.11637 -27.65424 -27.15367 -24.97502 -24.01665 -22.66507 -22.26939 -21.00453 -19.73283 -18.84205 -17.52144 -17.39046 -16.98862 -16.58631 -15.96443 -15.68125 -15.50905 -15.34724 -15.08372 -14.80739 -14.57316 -14.42452 -13.97466 -13.70542 -13.39671 -13.15405 -13.12584 -12.99539 -12.63478 -12.53469 -12.39763 -12.22034 -12.12350 -11.77143 -11.69809 -11.58007 -11.42187 -11.31056 -11.26174 -11.25768 -10.69422 -10.30629 -8.94103 -8.19176 -5.49828 0.37550 1.15395 1.22805 1.36614 1.43445 1.98076 2.34429 2.35787 3.00832 3.08777 3.30481 3.78599 3.89221 3.93742 3.99213 4.04576 4.11281 4.30135 4.38824 4.44173 4.48452 4.57772 4.69751 4.73244 4.73620 4.85698 4.87263 4.89553 4.97037 5.05493 5.08161 5.12101 5.23001 5.25768 5.29324 5.29792 5.31547 5.58815 5.85463 6.10183 6.11318 6.20271 6.85855 6.90164 7.60747 8.01849 9.00726 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014980 B = 0.005195 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.704757 B = 5388.820635 C = 6788.444297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.001 3.999 3 C -0.142 4.142 4 C -0.044 4.044 5 C -0.281 4.281 6 C 0.633 3.367 7 O -0.565 6.565 8 N -0.710 5.710 9 C 0.129 3.871 10 C -0.107 4.107 11 H 0.076 0.924 12 C -0.098 4.098 13 C -0.125 4.125 14 C 0.137 3.863 15 N -0.621 5.621 16 C -0.247 4.247 17 H 0.056 0.944 18 C -0.027 4.027 19 N -0.953 5.953 20 Si 0.936 3.064 21 H -0.276 1.276 22 H -0.312 1.312 23 H -0.267 1.267 24 C 0.129 3.871 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.050 0.950 28 H 0.124 0.876 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.409 0.591 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.032 0.968 41 H 0.262 0.738 42 H 0.025 0.975 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.824 14.317 1.558 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 C -0.199 4.199 4 C -0.046 4.046 5 C -0.283 4.283 6 C 0.421 3.579 7 O -0.446 6.446 8 N -0.360 5.360 9 C 0.006 3.994 10 C -0.127 4.127 11 H 0.094 0.906 12 C -0.136 4.136 13 C -0.163 4.163 14 C 0.012 3.988 15 N -0.345 5.345 16 C -0.376 4.376 17 H 0.073 0.927 18 C -0.222 4.222 19 N -0.599 5.599 20 Si 0.766 3.234 21 H -0.202 1.202 22 H -0.242 1.242 23 H -0.192 1.192 24 C 0.004 3.996 25 H 0.075 0.925 26 H 0.118 0.882 27 H 0.069 0.931 28 H 0.141 0.859 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.244 0.756 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.043 0.957 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.942 14.705 2.192 16.011 hybrid contribution -1.070 -0.128 -0.282 1.114 sum 4.872 14.577 1.910 15.488 Atomic orbital electron populations 1.21880 0.91906 1.02630 1.03992 1.18928 0.96927 0.96163 0.89653 1.21853 1.01617 0.92633 1.03831 1.23600 0.91534 0.95366 0.94146 1.20790 1.06615 1.03688 0.97247 1.14829 0.76989 0.81911 0.84150 1.90783 1.52274 1.67015 1.34537 1.46040 1.65847 1.05975 1.18150 1.21579 1.00536 0.90948 0.86334 1.21820 0.97638 0.92297 1.00952 0.90585 1.21380 1.01361 0.94918 0.95944 1.21890 0.96659 0.95944 1.01847 1.21201 0.92764 0.94907 0.89899 1.44498 1.66305 1.01277 1.22395 1.18918 1.09973 1.05319 1.03420 0.92653 1.25766 0.98887 1.00985 0.96562 1.69939 1.31731 1.47373 1.10847 0.86083 0.77876 0.79804 0.79646 1.20235 1.24164 1.19213 1.21388 0.95708 0.84076 0.98392 0.92535 0.88213 0.93101 0.85879 0.92660 0.92164 0.88461 0.75562 0.91375 0.89242 0.89436 0.91362 0.92803 0.89109 0.92764 0.94955 0.92934 0.95671 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.15 71.98 0.66 -1.62 16 2 C 0.00 0.02 3.30 -12.60 -0.04 -0.02 16 3 C -0.14 -1.85 9.15 71.98 0.66 -1.19 16 4 C -0.04 -1.15 12.56 31.13 0.39 -0.76 16 5 C -0.28 -8.97 13.61 30.02 0.41 -8.56 16 6 C 0.63 22.13 7.65 85.49 0.65 22.78 16 7 O -0.56 -22.46 17.08 -4.06 -0.07 -22.53 16 8 N -0.71 -22.86 5.32 -470.72 -2.51 -25.36 16 9 C 0.13 3.77 5.07 86.38 0.44 4.20 16 10 C -0.11 -3.33 2.37 -10.72 -0.03 -3.35 16 11 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 12 C -0.10 -2.52 5.17 30.62 0.16 -2.36 16 13 C -0.12 -3.49 6.08 30.67 0.19 -3.30 16 14 C 0.14 5.03 6.52 86.36 0.56 5.59 16 15 N -0.62 -28.40 2.77 -699.09 -1.94 -30.34 16 16 C -0.25 -13.75 10.04 84.03 0.84 -12.91 16 17 H 0.06 3.37 8.06 -2.91 -0.02 3.34 16 18 C -0.03 -1.55 5.24 84.86 0.44 -1.11 16 19 N -0.95 -58.79 13.97 21.65 0.30 -58.48 16 20 Si 0.94 46.54 24.35 68.60 1.67 48.21 16 21 H -0.28 -12.91 6.70 99.48 0.67 -12.24 16 22 H -0.31 -15.91 7.11 99.48 0.71 -15.20 16 23 H -0.27 -13.00 6.45 99.48 0.64 -12.36 16 24 C 0.13 5.28 3.28 86.36 0.28 5.57 16 25 H 0.06 0.93 8.14 -2.38 -0.02 0.92 16 26 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.41 13.17 7.67 -92.71 -0.71 12.46 16 33 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.05 1.61 8.14 -2.38 -0.02 1.60 16 38 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.05 2.05 7.93 -2.38 -0.02 2.03 16 40 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 42 H 0.03 1.05 6.98 -2.39 -0.02 1.03 16 43 H 0.05 2.13 3.71 -2.39 -0.01 2.12 16 Total: -1.00 -71.40 347.73 3.25 -68.15 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.17 Total: 17.40 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 5.62 Total: 2.95 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -4.14 Total: -114.19 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.07 Total: -22.53 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.67 Total: 48.21 kcal Total: -71.40 3.25 -68.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566867946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.143 kcal (2) G-P(sol) polarization free energy of solvation -71.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds