Wall clock time and date at job start Tue Mar 31 2020 00:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47311 * 144.28670 * 3 2 1 5 5 C 1.52993 * 109.47148 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47334 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99529 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00486 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00346 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47195 * 179.97438 * 9 8 6 11 11 H 1.09005 * 109.58751 * 300.29022 * 10 9 8 12 12 C 1.53196 * 109.58631 * 180.02562 * 10 9 8 13 13 C 1.53038 * 109.31193 * 185.43372 * 12 10 9 14 14 C 1.53043 * 109.53953 * 61.36138 * 13 12 10 15 15 C 1.53185 * 109.31595 * 298.63531 * 14 13 12 16 16 N 1.46935 * 108.89166 * 54.55922 * 15 14 13 17 17 C 1.36936 * 120.62508 * 126.46931 * 16 15 14 18 18 H 1.08003 * 119.99272 * 210.93427 * 17 16 15 19 19 C 1.38805 * 120.00387 * 30.93455 * 17 16 15 20 20 N 1.31620 * 119.99919 * 14.18324 * 19 17 16 21 21 Si 1.86799 * 120.00064 * 194.18095 * 19 17 16 22 22 H 1.48511 * 109.46944 * 90.00095 * 21 19 17 23 23 H 1.48498 * 109.47395 * 210.00088 * 21 19 17 24 24 H 1.48499 * 109.47448 * 330.00509 * 21 19 17 25 25 H 4.44653 * 5.63406 * 180.02562 * 4 1 2 26 26 H 1.08995 * 109.47502 * 24.28256 * 3 2 1 27 27 H 1.09006 * 109.47101 * 264.28739 * 3 2 1 28 28 H 1.09004 * 109.46937 * 59.99926 * 4 3 2 29 29 H 1.08997 * 109.46990 * 299.99882 * 4 3 2 30 30 H 1.08995 * 109.47622 * 59.99613 * 5 4 3 31 31 H 1.09006 * 109.47144 * 299.99996 * 5 4 3 32 32 H 0.97004 * 119.99953 * 359.97438 * 8 6 5 33 33 H 1.09004 * 109.46894 * 59.99720 * 9 8 6 34 34 H 1.08997 * 109.46986 * 299.99706 * 9 8 6 35 35 H 1.08996 * 109.49614 * 65.48329 * 12 10 9 36 36 H 1.08995 * 109.49653 * 305.38447 * 12 10 9 37 37 H 1.09003 * 109.46197 * 301.34293 * 13 12 10 38 38 H 1.09002 * 109.45070 * 181.37996 * 13 12 10 39 39 H 1.09002 * 109.49642 * 178.68050 * 14 13 12 40 40 H 1.09004 * 109.49437 * 58.59015 * 14 13 12 41 41 H 1.08995 * 109.58753 * 174.41814 * 15 14 13 42 42 H 1.09004 * 109.58503 * 294.70576 * 15 14 13 43 43 H 0.97003 * 119.99605 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.1721 -0.8420 5 6 4.6854 1.1724 -0.8425 6 6 5.1873 2.3266 -1.6714 7 8 4.3989 3.0750 -2.2091 8 7 6.5123 2.5266 -1.8159 9 6 7.0002 3.6483 -2.6221 10 6 8.5301 3.6487 -2.6225 11 1 8.8958 3.7457 -1.6002 12 6 9.0432 4.8212 -3.4644 13 6 10.5674 4.7376 -3.5729 14 6 10.9601 3.4334 -4.2708 15 6 10.4689 2.2452 -3.4381 16 7 9.0260 2.3931 -3.2032 17 6 8.1599 1.3817 -3.5228 18 1 7.1504 1.6121 -3.8297 19 6 8.5794 0.0604 -3.4522 20 7 9.6945 -0.2432 -2.8223 21 14 7.5614 -1.2867 -4.2511 22 1 8.0091 -1.4795 -5.6539 23 1 7.7376 -2.5537 -3.4967 24 1 6.1283 -0.8980 -4.2380 25 1 -1.0502 -0.0001 0.0003 26 1 3.0098 -0.9359 -0.4226 27 1 3.0093 0.1031 1.0226 28 1 2.7917 2.1087 -0.4193 29 1 2.7922 1.0696 -1.8646 30 1 5.0489 0.2358 -1.2654 31 1 5.0491 1.2746 0.1800 32 1 7.1429 1.9278 -1.3861 33 1 6.6370 4.5849 -2.1989 34 1 6.6363 3.5463 -3.6444 35 1 8.7633 5.7609 -2.9882 36 1 8.6043 4.7729 -4.4610 37 1 11.0044 4.7610 -2.5746 38 1 10.9372 5.5845 -4.1510 39 1 12.0447 3.3855 -4.3687 40 1 10.5033 3.3982 -5.2599 41 1 10.6580 1.3175 -3.9781 42 1 10.9944 2.2260 -2.4833 43 1 9.9875 -1.1666 -2.7727 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566920760.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:01 Heat of formation + Delta-G solvation = 14.483246 kcal Electronic energy + Delta-G solvation = -22143.692809 eV Core-core repulsion = 18997.109692 eV Total energy + Delta-G solvation = -3146.583117 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.26437 -37.75382 -35.51900 -34.09198 -33.08111 -32.21229 -30.74925 -29.92918 -27.94914 -25.85882 -24.63912 -22.27053 -22.02944 -20.63220 -19.66508 -19.07211 -18.17489 -16.80049 -15.99535 -15.83069 -15.36420 -15.24873 -14.24772 -14.08229 -14.00357 -13.75205 -13.47782 -13.17046 -12.89405 -12.57256 -12.42897 -12.28076 -11.98433 -11.64400 -11.39393 -11.18169 -10.97593 -10.81281 -10.79438 -10.55211 -10.29918 -10.21335 -10.15145 -10.08352 -10.01224 -9.56006 -9.45292 -9.16332 -8.59225 -8.18790 -6.68514 -5.86350 -3.32448 2.78912 2.82563 3.26625 3.31078 3.39184 3.41471 3.90303 4.38002 4.41186 5.11898 5.13170 5.21960 5.26338 5.30979 5.51163 5.60395 5.62236 5.65340 5.67217 5.74197 5.87411 5.96460 6.01880 6.08071 6.15204 6.26790 6.32906 6.35347 6.41010 6.41594 6.58779 6.69775 6.72106 6.84544 6.97958 7.22811 7.36226 7.60135 7.62850 7.77286 8.31115 8.38671 8.92640 9.14150 9.75752 10.34014 11.20613 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017640 B = 0.005016 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.883477 B = 5580.795155 C = 6798.685836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.176 4.176 3 C -0.018 4.018 4 C -0.096 4.096 5 C -0.142 4.142 6 C 0.507 3.493 7 O -0.568 6.568 8 N -0.695 5.695 9 C 0.134 3.866 10 C 0.161 3.839 11 H 0.031 0.969 12 C -0.128 4.128 13 C -0.107 4.107 14 C -0.144 4.144 15 C 0.173 3.827 16 N -0.588 5.588 17 C -0.250 4.250 18 H 0.070 0.930 19 C 0.008 3.992 20 N -0.900 5.900 21 Si 0.892 3.108 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.277 1.277 25 H 0.215 0.785 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.415 0.585 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.084 0.916 42 H 0.018 0.982 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.549 3.450 4.827 8.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.176 4.176 3 C -0.054 4.054 4 C -0.134 4.134 5 C -0.182 4.182 6 C 0.293 3.707 7 O -0.448 6.448 8 N -0.346 5.346 9 C 0.010 3.990 10 C 0.054 3.946 11 H 0.049 0.951 12 C -0.168 4.168 13 C -0.145 4.145 14 C -0.184 4.184 15 C 0.048 3.952 16 N -0.312 5.312 17 C -0.380 4.380 18 H 0.088 0.912 19 C -0.191 4.191 20 N -0.544 5.544 21 Si 0.722 3.278 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.203 1.203 25 H 0.232 0.768 26 H 0.107 0.893 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.252 0.748 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.036 0.964 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.003 3.805 4.485 8.404 hybrid contribution -0.220 -1.133 -0.343 1.204 sum -6.223 2.672 4.142 7.938 Atomic orbital electron populations 1.24846 0.95940 1.01548 1.01699 1.23221 0.94652 0.99889 0.99847 1.18840 0.84606 1.00316 1.01659 1.21238 0.93632 0.97602 1.00902 1.21640 0.96578 0.98853 1.01116 1.20481 0.82683 0.85966 0.81558 1.90632 1.55739 1.48351 1.50125 1.46020 1.06553 1.31091 1.50895 1.21256 0.94067 0.87957 0.95709 1.20725 0.90897 0.88111 0.94890 0.95127 1.21943 0.96194 0.97804 1.00812 1.21364 0.95728 0.97453 0.99965 1.22195 0.98823 0.97174 1.00167 1.20751 0.83164 0.95380 0.95936 1.44081 1.03147 1.12323 1.71688 1.19221 0.95540 0.84746 1.38461 0.91194 1.25058 0.97718 0.97343 0.99018 1.70011 1.23615 1.17762 1.42994 0.86452 0.80174 0.81810 0.79401 1.21453 1.21696 1.20271 0.76824 0.89348 0.89453 0.91014 0.90906 0.88553 0.89107 0.74776 0.92830 0.91754 0.93041 0.92115 0.92878 0.93731 0.93526 0.92859 0.89794 0.96376 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.53 19.25 29.55 0.57 -1.97 16 2 C -0.18 -2.23 13.34 -37.12 -0.50 -2.72 16 3 C -0.02 -0.20 5.70 -29.52 -0.17 -0.37 16 4 C -0.10 -1.30 4.46 -26.73 -0.12 -1.42 16 5 C -0.14 -2.01 5.70 -27.89 -0.16 -2.17 16 6 C 0.51 9.29 7.83 -10.99 -0.09 9.20 16 7 O -0.57 -12.10 15.98 5.55 0.09 -12.02 16 8 N -0.70 -12.99 3.86 -60.30 -0.23 -13.22 16 9 C 0.13 2.53 4.43 -4.05 -0.02 2.51 16 10 C 0.16 3.07 2.99 -67.58 -0.20 2.87 16 11 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 12 C -0.13 -2.14 5.37 -26.61 -0.14 -2.28 16 13 C -0.11 -1.75 5.88 -26.69 -0.16 -1.91 16 14 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 15 C 0.17 3.86 5.26 -3.71 -0.02 3.84 16 16 N -0.59 -13.25 2.98 -164.75 -0.49 -13.74 16 17 C -0.25 -6.12 7.02 -15.06 -0.11 -6.23 16 18 H 0.07 1.77 5.86 -52.48 -0.31 1.47 16 19 C 0.01 0.20 4.96 -17.43 -0.09 0.11 16 20 N -0.90 -23.93 11.23 55.49 0.62 -23.31 16 21 Si 0.89 20.60 29.58 -169.99 -5.03 15.58 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 H 0.21 1.64 7.80 -54.08 -0.42 1.22 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 29 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 30 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.41 7.97 7.42 -40.82 -0.30 7.67 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.34 7.41 -51.93 -0.38 0.96 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.08 2.12 6.19 -51.93 -0.32 1.80 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 348.29 15.07 5.25 5.25 Total: -1.00 -28.76 348.29 -8.35 -37.11 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.21 Total: 7.71 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -1.35 Total: -3.36 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.10 Total: -50.27 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.76 -8.35 -37.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566920760.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.593 kcal (2) G-P(sol) polarization free energy of solvation -28.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds