Wall clock time and date at job start Tue Mar 31 2020 00:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47311 * 144.28670 * 3 2 1 5 5 C 1.52993 * 109.47148 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47334 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99529 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00486 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00346 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47195 * 179.97438 * 9 8 6 11 11 H 1.09005 * 109.58751 * 300.29022 * 10 9 8 12 12 C 1.53196 * 109.58631 * 180.02562 * 10 9 8 13 13 C 1.53038 * 109.31193 * 185.43372 * 12 10 9 14 14 C 1.53043 * 109.53953 * 61.36138 * 13 12 10 15 15 C 1.53185 * 109.31595 * 298.63531 * 14 13 12 16 16 N 1.46935 * 108.89166 * 54.55922 * 15 14 13 17 17 C 1.36936 * 120.62508 * 126.46931 * 16 15 14 18 18 H 1.08003 * 119.99272 * 210.93427 * 17 16 15 19 19 C 1.38805 * 120.00387 * 30.93455 * 17 16 15 20 20 N 1.31620 * 119.99919 * 14.18324 * 19 17 16 21 21 Si 1.86799 * 120.00064 * 194.18095 * 19 17 16 22 22 H 1.48511 * 109.46944 * 90.00095 * 21 19 17 23 23 H 1.48498 * 109.47395 * 210.00088 * 21 19 17 24 24 H 1.48499 * 109.47448 * 330.00509 * 21 19 17 25 25 H 4.44653 * 5.63406 * 180.02562 * 4 1 2 26 26 H 1.08995 * 109.47502 * 24.28256 * 3 2 1 27 27 H 1.09006 * 109.47101 * 264.28739 * 3 2 1 28 28 H 1.09004 * 109.46937 * 59.99926 * 4 3 2 29 29 H 1.08997 * 109.46990 * 299.99882 * 4 3 2 30 30 H 1.08995 * 109.47622 * 59.99613 * 5 4 3 31 31 H 1.09006 * 109.47144 * 299.99996 * 5 4 3 32 32 H 0.97004 * 119.99953 * 359.97438 * 8 6 5 33 33 H 1.09004 * 109.46894 * 59.99720 * 9 8 6 34 34 H 1.08997 * 109.46986 * 299.99706 * 9 8 6 35 35 H 1.08996 * 109.49614 * 65.48329 * 12 10 9 36 36 H 1.08995 * 109.49653 * 305.38447 * 12 10 9 37 37 H 1.09003 * 109.46197 * 301.34293 * 13 12 10 38 38 H 1.09002 * 109.45070 * 181.37996 * 13 12 10 39 39 H 1.09002 * 109.49642 * 178.68050 * 14 13 12 40 40 H 1.09004 * 109.49437 * 58.59015 * 14 13 12 41 41 H 1.08995 * 109.58753 * 174.41814 * 15 14 13 42 42 H 1.09004 * 109.58503 * 294.70576 * 15 14 13 43 43 H 0.97003 * 119.99605 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.1721 -0.8420 5 6 4.6854 1.1724 -0.8425 6 6 5.1873 2.3266 -1.6714 7 8 4.3989 3.0750 -2.2091 8 7 6.5123 2.5266 -1.8159 9 6 7.0002 3.6483 -2.6221 10 6 8.5301 3.6487 -2.6225 11 1 8.8958 3.7457 -1.6002 12 6 9.0432 4.8212 -3.4644 13 6 10.5674 4.7376 -3.5729 14 6 10.9601 3.4334 -4.2708 15 6 10.4689 2.2452 -3.4381 16 7 9.0260 2.3931 -3.2032 17 6 8.1599 1.3817 -3.5228 18 1 7.1504 1.6121 -3.8297 19 6 8.5794 0.0604 -3.4522 20 7 9.6945 -0.2432 -2.8223 21 14 7.5614 -1.2867 -4.2511 22 1 8.0091 -1.4795 -5.6539 23 1 7.7376 -2.5537 -3.4967 24 1 6.1283 -0.8980 -4.2380 25 1 -1.0502 -0.0001 0.0003 26 1 3.0098 -0.9359 -0.4226 27 1 3.0093 0.1031 1.0226 28 1 2.7917 2.1087 -0.4193 29 1 2.7922 1.0696 -1.8646 30 1 5.0489 0.2358 -1.2654 31 1 5.0491 1.2746 0.1800 32 1 7.1429 1.9278 -1.3861 33 1 6.6370 4.5849 -2.1989 34 1 6.6363 3.5463 -3.6444 35 1 8.7633 5.7609 -2.9882 36 1 8.6043 4.7729 -4.4610 37 1 11.0044 4.7610 -2.5746 38 1 10.9372 5.5845 -4.1510 39 1 12.0447 3.3855 -4.3687 40 1 10.5033 3.3982 -5.2599 41 1 10.6580 1.3175 -3.9781 42 1 10.9944 2.2260 -2.4833 43 1 9.9875 -1.1666 -2.7727 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566920760.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:00 Heat of formation + Delta-G solvation = -0.955733 kcal Electronic energy + Delta-G solvation = -22144.362293 eV Core-core repulsion = 18997.109692 eV Total energy + Delta-G solvation = -3147.252602 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.76724 -39.32027 -36.55554 -35.60842 -34.87577 -33.28003 -32.26747 -31.65769 -29.09111 -27.49121 -26.23690 -23.84300 -23.29524 -22.15215 -21.12275 -20.61762 -19.13164 -18.41835 -17.54321 -17.31928 -16.76431 -16.67876 -15.93461 -15.65256 -15.17716 -15.10867 -14.87473 -14.57309 -14.42719 -14.06045 -13.71450 -13.66761 -13.40757 -13.18109 -12.83720 -12.73630 -12.57773 -12.45887 -12.28386 -12.00021 -11.92256 -11.78847 -11.53041 -11.16387 -11.14160 -11.08096 -10.97444 -10.67068 -10.49327 -9.77784 -8.54274 -7.80401 -5.27161 1.42778 1.49583 1.54300 1.80724 1.86993 1.93193 2.49024 2.55092 3.34705 3.52935 3.60192 3.90510 4.02652 4.08650 4.19984 4.22792 4.28494 4.44376 4.51880 4.58387 4.64859 4.68244 4.71150 4.81712 4.83641 4.88555 5.00680 5.15101 5.20326 5.20852 5.22247 5.28834 5.31521 5.39805 5.47160 5.64710 5.69757 5.78478 5.85142 6.46746 6.72345 6.80523 7.22017 7.43883 7.90872 8.44601 9.24197 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017640 B = 0.005016 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.883477 B = 5580.795155 C = 6798.685836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.218 4.218 3 C -0.013 4.013 4 C -0.087 4.087 5 C -0.135 4.135 6 C 0.501 3.499 7 O -0.601 6.601 8 N -0.697 5.697 9 C 0.139 3.861 10 C 0.161 3.839 11 H 0.034 0.966 12 C -0.123 4.123 13 C -0.102 4.102 14 C -0.136 4.136 15 C 0.178 3.822 16 N -0.601 5.601 17 C -0.236 4.236 18 H 0.061 0.939 19 C -0.031 4.031 20 N -0.924 5.924 21 Si 0.938 3.062 22 H -0.298 1.298 23 H -0.291 1.291 24 H -0.276 1.276 25 H 0.245 0.755 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.413 0.587 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.049 0.951 42 H 0.002 0.998 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.970 4.373 5.599 9.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.218 4.218 3 C -0.049 4.049 4 C -0.125 4.125 5 C -0.175 4.175 6 C 0.289 3.711 7 O -0.484 6.484 8 N -0.347 5.347 9 C 0.014 3.986 10 C 0.055 3.945 11 H 0.051 0.949 12 C -0.163 4.163 13 C -0.140 4.140 14 C -0.175 4.175 15 C 0.052 3.948 16 N -0.326 5.326 17 C -0.366 4.366 18 H 0.078 0.922 19 C -0.228 4.228 20 N -0.570 5.570 21 Si 0.768 3.232 22 H -0.225 1.225 23 H -0.217 1.217 24 H -0.201 1.201 25 H 0.261 0.739 26 H 0.114 0.886 27 H 0.127 0.873 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.140 0.860 32 H 0.250 0.750 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.020 0.980 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.427 4.745 5.260 9.565 hybrid contribution -0.129 -1.359 -0.596 1.489 sum -6.555 3.386 4.664 8.729 Atomic orbital electron populations 1.25711 0.96957 1.00072 1.00385 1.23721 0.95634 1.01285 1.01163 1.18815 0.84316 0.99405 1.02361 1.21122 0.93100 0.98385 0.99942 1.21675 0.96876 0.96903 1.02012 1.21194 0.82130 0.86476 0.81271 1.90611 1.56357 1.49854 1.51579 1.46079 1.06837 1.31019 1.50722 1.21203 0.93928 0.88839 0.94587 1.20871 0.90938 0.87473 0.95242 0.94870 1.21904 0.96524 0.97825 1.00021 1.21346 0.95261 0.96944 1.00453 1.22059 0.99780 0.96690 0.98993 1.20572 0.83185 0.95724 0.95284 1.44266 1.03067 1.13093 1.72174 1.19211 0.95238 0.85270 1.36909 0.92169 1.25475 0.98571 0.98704 1.00038 1.70118 1.24854 1.17467 1.44603 0.85720 0.79205 0.80218 0.78018 1.22533 1.21716 1.20068 0.73908 0.88608 0.87345 0.91851 0.93323 0.88241 0.85968 0.75047 0.91184 0.94162 0.90028 0.93002 0.92322 0.90814 0.91722 0.93752 0.93296 0.97982 0.94254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.50 19.25 74.32 1.43 -3.07 16 2 C -0.22 -5.25 13.34 31.13 0.42 -4.84 16 3 C -0.01 -0.27 5.70 28.79 0.16 -0.11 16 4 C -0.09 -2.32 4.46 30.59 0.14 -2.19 16 5 C -0.14 -3.68 5.70 29.85 0.17 -3.51 16 6 C 0.50 18.18 7.83 87.66 0.69 18.87 16 7 O -0.60 -25.73 15.98 -3.04 -0.05 -25.78 16 8 N -0.70 -25.76 3.86 -463.07 -1.79 -27.55 16 9 C 0.14 5.14 4.43 86.38 0.38 5.52 16 10 C 0.16 5.95 2.99 44.97 0.13 6.08 16 11 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 12 C -0.12 -3.81 5.37 30.67 0.16 -3.65 16 13 C -0.10 -3.02 5.88 30.62 0.18 -2.84 16 14 C -0.14 -4.81 6.08 30.67 0.19 -4.62 16 15 C 0.18 7.95 5.26 86.36 0.45 8.41 16 16 N -0.60 -27.04 2.98 -675.15 -2.01 -29.06 16 17 C -0.24 -11.64 7.02 84.03 0.59 -11.05 16 18 H 0.06 3.09 5.86 -2.91 -0.02 3.07 16 19 C -0.03 -1.61 4.96 84.86 0.42 -1.19 16 20 N -0.92 -50.02 11.23 21.65 0.24 -49.77 16 21 Si 0.94 42.85 29.58 68.60 2.03 44.88 16 22 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 23 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 25 H 0.24 3.10 7.80 -4.41 -0.03 3.06 16 26 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.11 1.82 8.14 -2.38 -0.02 1.81 16 28 H 0.06 1.77 8.10 -2.38 -0.02 1.75 16 29 H 0.05 1.50 8.10 -2.39 -0.02 1.49 16 30 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.12 2.57 8.14 -2.38 -0.02 2.55 16 32 H 0.41 15.70 7.42 -92.71 -0.69 15.01 16 33 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 34 H 0.04 1.68 7.41 -2.39 -0.02 1.67 16 35 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.05 2.52 6.19 -2.39 -0.01 2.51 16 42 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.25 13.26 8.31 -92.71 -0.77 12.49 16 Total: -1.00 -62.70 348.29 4.23 -58.47 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.29 Total: 26.99 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 5.52 Total: 1.82 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -3.56 Total: -106.38 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.05 Total: -25.78 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -62.70 4.23 -58.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566920760.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.517 kcal (2) G-P(sol) polarization free energy of solvation -62.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds