Wall clock time and date at job start Tue Mar 31 2020 00:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50695 * 120.00685 * 2 1 4 4 C 1.52997 * 109.47359 * 125.85556 * 3 2 1 5 5 C 1.53000 * 109.47501 * 173.48463 * 4 3 2 6 6 C 1.50702 * 109.46512 * 294.42409 * 5 4 3 7 7 C 1.31004 * 119.99911 * 125.00259 * 6 5 4 8 8 C 1.50702 * 109.47006 * 293.48276 * 4 3 2 9 9 O 1.21281 * 120.00149 * 240.00145 * 8 4 3 10 10 N 1.34777 * 120.00030 * 59.99909 * 8 4 3 11 11 C 1.46497 * 119.99876 * 180.02562 * 10 8 4 12 12 C 1.53007 * 109.47115 * 179.97438 * 11 10 8 13 13 C 1.53944 * 113.73817 * 86.25899 * 12 11 10 14 14 N 1.47812 * 86.03887 * 90.88449 * 13 12 11 15 15 C 1.36938 * 134.46002 * 204.64545 * 14 13 12 16 16 H 1.07995 * 120.00196 * 174.33315 * 15 14 13 17 17 C 1.38820 * 119.99681 * 354.33460 * 15 14 13 18 18 N 1.31617 * 120.00007 * 5.02534 * 17 15 14 19 19 Si 1.86795 * 119.99842 * 185.02097 * 17 15 14 20 20 H 1.48493 * 109.47176 * 94.99552 * 19 17 15 21 21 H 1.48495 * 109.47194 * 214.99771 * 19 17 15 22 22 H 1.48510 * 109.47203 * 334.99497 * 19 17 15 23 23 C 1.47581 * 91.05101 * 24.54680 * 14 13 12 24 24 H 1.08009 * 119.99475 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.00372 * 179.97438 * 1 2 3 26 26 H 1.08009 * 119.99475 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.46951 * 5.85717 * 3 2 1 28 28 H 1.08996 * 109.47651 * 245.85754 * 3 2 1 29 29 H 1.09003 * 109.46967 * 53.48008 * 4 3 2 30 30 H 1.08998 * 109.47129 * 54.42322 * 5 4 3 31 31 H 1.08997 * 109.47133 * 174.42331 * 5 4 3 32 32 H 1.08004 * 120.00323 * 304.99681 * 6 5 4 33 33 H 1.08006 * 120.00018 * 179.97438 * 7 6 5 34 34 H 1.08004 * 119.99766 * 359.97438 * 7 6 5 35 35 H 0.97002 * 120.00050 * 359.97438 * 10 8 4 36 36 H 1.09000 * 109.47616 * 60.00001 * 11 10 8 37 37 H 1.09004 * 109.47262 * 299.99759 * 11 10 8 38 38 H 1.08995 * 112.94358 * 314.67253 * 12 11 10 39 39 H 1.09005 * 113.76927 * 205.14847 * 13 12 11 40 40 H 1.08998 * 113.77269 * 336.54473 * 13 12 11 41 41 H 0.96995 * 119.99888 * 180.02562 * 18 17 15 42 42 H 1.08994 * 113.77267 * 221.15589 * 23 14 13 43 43 H 1.09004 * 113.76680 * 89.75081 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0504 1.3241 1.1691 5 6 3.9276 2.5742 1.0758 6 6 4.7905 2.4912 -0.1569 7 6 4.7676 3.4596 -1.0389 8 6 2.2885 1.3411 2.4692 9 8 2.4328 2.2623 3.2447 10 7 1.4466 0.3325 2.7702 11 6 0.7055 0.3494 4.0338 12 6 -0.1722 -0.9005 4.1270 13 6 0.5550 -2.1264 4.7087 14 7 0.0687 -1.6619 6.0250 15 6 0.4918 -1.8277 7.3168 16 1 -0.0002 -1.2970 8.1185 17 6 1.5531 -2.6779 7.5959 18 7 2.2161 -3.2476 6.6120 19 14 2.0403 -3.0131 9.3677 20 1 1.3812 -4.2590 9.8350 21 1 3.5144 -3.1704 9.4545 22 1 1.6126 -1.8763 10.2223 23 6 -1.0538 -0.9461 5.3882 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9352 -0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3600 2.1308 0.1049 28 1 2.6093 1.4095 -0.9377 29 1 3.6794 0.4348 1.1282 30 1 3.2940 3.4591 1.0169 31 1 4.5620 2.6397 1.9597 32 1 5.4279 1.6335 -0.3133 33 1 5.3863 3.4004 -1.9222 34 1 4.1299 4.3172 -0.8827 35 1 1.3308 -0.4041 2.1498 36 1 0.0763 1.2385 4.0743 37 1 1.4082 0.3633 4.8670 38 1 -0.7143 -1.1087 3.2047 39 1 0.1295 -3.0795 4.3945 40 1 1.6388 -2.0866 4.6004 41 1 2.9575 -3.8420 6.8069 42 1 -1.2520 0.0343 5.8213 43 1 -1.9528 -1.5518 5.2740 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567831327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:23 Heat of formation + Delta-G solvation = 43.677063 kcal Electronic energy + Delta-G solvation = -21832.656631 eV Core-core repulsion = 18687.339452 eV Total energy + Delta-G solvation = -3145.317178 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.93478 -38.09658 -36.38819 -34.86686 -33.69715 -32.09158 -31.14720 -28.50996 -26.54715 -25.99163 -24.78417 -23.27629 -22.05478 -20.13016 -20.05546 -19.73434 -18.55422 -16.79168 -16.68729 -15.87847 -15.66822 -15.16985 -14.85132 -14.80065 -14.16851 -13.98985 -13.72144 -13.50497 -13.10208 -12.92221 -12.54217 -12.44060 -12.15970 -11.77233 -11.45604 -11.17436 -11.11166 -11.04313 -10.99904 -10.97261 -10.69340 -10.46557 -9.89875 -9.80352 -9.70809 -9.47880 -9.31829 -9.24747 -8.76735 -8.56603 -6.83857 -5.75100 -3.05787 2.06348 2.14997 2.95862 3.41590 3.46835 3.48791 3.53670 4.49234 4.55204 4.69202 4.81133 4.93465 5.09642 5.15504 5.21582 5.23035 5.37076 5.39151 5.45339 5.54271 5.62993 5.66970 5.76770 5.81409 5.91554 6.02724 6.10737 6.19851 6.36113 6.46886 6.47653 6.55397 6.59538 6.62011 6.66513 6.73402 6.88750 7.22112 7.31757 7.59414 7.88410 8.00810 8.56828 9.07545 9.74014 10.63492 11.42548 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021523 B = 0.003988 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.600630 B = 7019.368841 C = 7685.983261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.172 4.172 3 C -0.083 4.083 4 C -0.100 4.100 5 C -0.077 4.077 6 C -0.147 4.147 7 C -0.199 4.199 8 C 0.513 3.487 9 O -0.548 6.548 10 N -0.718 5.718 11 C 0.147 3.853 12 C -0.154 4.154 13 C 0.168 3.832 14 N -0.610 5.610 15 C -0.222 4.222 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.920 5.920 19 Si 0.908 3.092 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.126 3.874 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.398 0.602 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.027 0.973 40 H 0.071 0.929 41 H 0.252 0.748 42 H 0.045 0.955 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 8.042 -17.953 19.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.190 4.190 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.114 4.114 6 C -0.165 4.165 7 C -0.236 4.236 8 C 0.299 3.701 9 O -0.426 6.426 10 N -0.370 5.370 11 C 0.024 3.976 12 C -0.174 4.174 13 C 0.043 3.957 14 N -0.337 5.337 15 C -0.350 4.350 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.567 5.567 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.000 4.000 24 H 0.114 0.886 25 H 0.119 0.881 26 H 0.132 0.868 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.235 0.765 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.045 0.955 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.269 8.578 -17.106 19.138 hybrid contribution 0.148 -0.923 0.713 1.176 sum 0.417 7.655 -16.393 18.097 Atomic orbital electron populations 1.23938 0.95889 1.02189 0.99448 1.23015 0.96325 0.98552 1.01121 1.20754 0.97568 0.95890 0.97804 1.21311 0.97069 1.00901 0.92836 1.20578 0.96981 0.97020 0.96856 1.22998 0.98700 0.99034 0.95752 1.23837 1.02021 0.98837 0.98872 1.20466 0.79651 0.82212 0.87786 1.90687 1.65198 1.35553 1.51113 1.46264 1.44291 1.24403 1.22067 1.21050 0.94518 0.96427 0.85604 1.23446 0.98763 0.97539 0.97673 1.22291 0.98973 0.91245 0.83215 1.46019 1.26209 1.59360 1.02133 1.19039 1.12336 1.21286 0.82341 0.90266 1.24786 0.98741 0.99371 0.97485 1.69824 1.22778 1.34559 1.29536 0.86146 0.77529 0.78107 0.84324 1.21723 1.21737 1.20546 1.22527 0.91651 0.95876 0.89958 0.88591 0.88058 0.86757 0.91110 0.89730 0.88307 0.90815 0.89764 0.87308 0.88667 0.88626 0.76486 0.92498 0.90179 0.91684 0.95534 0.91072 0.93754 0.93723 0.94612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 13.84 29.02 0.40 -1.17 16 2 C -0.17 -1.53 6.75 -36.03 -0.24 -1.77 16 3 C -0.08 -0.76 5.03 -27.89 -0.14 -0.90 16 4 C -0.10 -1.12 2.25 -91.77 -0.21 -1.33 16 5 C -0.08 -0.85 4.49 -27.88 -0.13 -0.97 16 6 C -0.15 -1.30 8.43 -36.03 -0.30 -1.60 16 7 C -0.20 -1.59 14.32 29.01 0.42 -1.18 16 8 C 0.51 8.02 7.14 -10.98 -0.08 7.94 16 9 O -0.55 -10.77 15.91 5.56 0.09 -10.69 16 10 N -0.72 -10.97 5.10 -60.29 -0.31 -11.28 16 11 C 0.15 2.67 5.42 -4.04 -0.02 2.65 16 12 C -0.15 -2.79 3.99 -89.69 -0.36 -3.15 16 13 C 0.17 3.87 6.97 -2.84 -0.02 3.85 16 14 N -0.61 -15.64 3.58 -177.68 -0.64 -16.28 16 15 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 16 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 17 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 18 N -0.92 -27.44 11.48 55.49 0.64 -26.80 16 19 Si 0.91 22.54 29.56 -169.99 -5.02 17.51 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.13 2.56 8.51 -2.96 -0.03 2.54 16 24 H 0.10 0.85 7.84 -52.48 -0.41 0.44 16 25 H 0.10 0.82 8.06 -52.49 -0.42 0.39 16 26 H 0.11 0.92 8.06 -52.48 -0.42 0.50 16 27 H 0.07 0.69 7.79 -51.93 -0.40 0.29 16 28 H 0.08 0.67 7.21 -51.93 -0.37 0.30 16 29 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.84 7.79 -51.93 -0.40 0.44 16 31 H 0.08 1.06 7.93 -51.93 -0.41 0.65 16 32 H 0.11 0.86 8.06 -52.48 -0.42 0.43 16 33 H 0.09 0.64 8.06 -52.48 -0.42 0.22 16 34 H 0.10 0.75 7.84 -52.48 -0.41 0.34 16 35 H 0.40 5.24 5.57 -40.82 -0.23 5.01 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.80 7.98 -51.93 -0.41 1.39 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 1.82 7.27 -51.93 -0.38 1.44 16 41 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.04 0.87 8.10 -51.93 -0.42 0.45 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 354.70 15.07 5.35 5.35 Total: -1.00 -32.77 354.70 -8.07 -40.84 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.21 Total: 3.22 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -0.96 Total: -1.87 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.31 Total: -54.36 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.77 -8.07 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567831327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.513 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds