Wall clock time and date at job start Tue Mar 31 2020 00:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50695 * 120.00685 * 2 1 4 4 C 1.52997 * 109.47359 * 125.85556 * 3 2 1 5 5 C 1.53000 * 109.47501 * 173.48463 * 4 3 2 6 6 C 1.50702 * 109.46512 * 294.42409 * 5 4 3 7 7 C 1.31004 * 119.99911 * 125.00259 * 6 5 4 8 8 C 1.50702 * 109.47006 * 293.48276 * 4 3 2 9 9 O 1.21281 * 120.00149 * 240.00145 * 8 4 3 10 10 N 1.34777 * 120.00030 * 59.99909 * 8 4 3 11 11 C 1.46497 * 119.99876 * 180.02562 * 10 8 4 12 12 C 1.53007 * 109.47115 * 179.97438 * 11 10 8 13 13 C 1.53944 * 113.73817 * 86.25899 * 12 11 10 14 14 N 1.47812 * 86.03887 * 90.88449 * 13 12 11 15 15 C 1.36938 * 134.46002 * 204.64545 * 14 13 12 16 16 H 1.07995 * 120.00196 * 174.33315 * 15 14 13 17 17 C 1.38820 * 119.99681 * 354.33460 * 15 14 13 18 18 N 1.31617 * 120.00007 * 5.02534 * 17 15 14 19 19 Si 1.86795 * 119.99842 * 185.02097 * 17 15 14 20 20 H 1.48493 * 109.47176 * 94.99552 * 19 17 15 21 21 H 1.48495 * 109.47194 * 214.99771 * 19 17 15 22 22 H 1.48510 * 109.47203 * 334.99497 * 19 17 15 23 23 C 1.47581 * 91.05101 * 24.54680 * 14 13 12 24 24 H 1.08009 * 119.99475 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.00372 * 179.97438 * 1 2 3 26 26 H 1.08009 * 119.99475 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.46951 * 5.85717 * 3 2 1 28 28 H 1.08996 * 109.47651 * 245.85754 * 3 2 1 29 29 H 1.09003 * 109.46967 * 53.48008 * 4 3 2 30 30 H 1.08998 * 109.47129 * 54.42322 * 5 4 3 31 31 H 1.08997 * 109.47133 * 174.42331 * 5 4 3 32 32 H 1.08004 * 120.00323 * 304.99681 * 6 5 4 33 33 H 1.08006 * 120.00018 * 179.97438 * 7 6 5 34 34 H 1.08004 * 119.99766 * 359.97438 * 7 6 5 35 35 H 0.97002 * 120.00050 * 359.97438 * 10 8 4 36 36 H 1.09000 * 109.47616 * 60.00001 * 11 10 8 37 37 H 1.09004 * 109.47262 * 299.99759 * 11 10 8 38 38 H 1.08995 * 112.94358 * 314.67253 * 12 11 10 39 39 H 1.09005 * 113.76927 * 205.14847 * 13 12 11 40 40 H 1.08998 * 113.77269 * 336.54473 * 13 12 11 41 41 H 0.96995 * 119.99888 * 180.02562 * 18 17 15 42 42 H 1.08994 * 113.77267 * 221.15589 * 23 14 13 43 43 H 1.09004 * 113.76680 * 89.75081 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0504 1.3241 1.1691 5 6 3.9276 2.5742 1.0758 6 6 4.7905 2.4912 -0.1569 7 6 4.7676 3.4596 -1.0389 8 6 2.2885 1.3411 2.4692 9 8 2.4328 2.2623 3.2447 10 7 1.4466 0.3325 2.7702 11 6 0.7055 0.3494 4.0338 12 6 -0.1722 -0.9005 4.1270 13 6 0.5550 -2.1264 4.7087 14 7 0.0687 -1.6619 6.0250 15 6 0.4918 -1.8277 7.3168 16 1 -0.0002 -1.2970 8.1185 17 6 1.5531 -2.6779 7.5959 18 7 2.2161 -3.2476 6.6120 19 14 2.0403 -3.0131 9.3677 20 1 1.3812 -4.2590 9.8350 21 1 3.5144 -3.1704 9.4545 22 1 1.6126 -1.8763 10.2223 23 6 -1.0538 -0.9461 5.3882 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9352 -0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3600 2.1308 0.1049 28 1 2.6093 1.4095 -0.9377 29 1 3.6794 0.4348 1.1282 30 1 3.2940 3.4591 1.0169 31 1 4.5620 2.6397 1.9597 32 1 5.4279 1.6335 -0.3133 33 1 5.3863 3.4004 -1.9222 34 1 4.1299 4.3172 -0.8827 35 1 1.3308 -0.4041 2.1498 36 1 0.0763 1.2385 4.0743 37 1 1.4082 0.3633 4.8670 38 1 -0.7143 -1.1087 3.2047 39 1 0.1295 -3.0795 4.3945 40 1 1.6388 -2.0866 4.6004 41 1 2.9575 -3.8420 6.8069 42 1 -1.2520 0.0343 5.8213 43 1 -1.9528 -1.5518 5.2740 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567831327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:23 Heat of formation + Delta-G solvation = 23.503939 kcal Electronic energy + Delta-G solvation = -21833.531403 eV Core-core repulsion = 18687.339452 eV Total energy + Delta-G solvation = -3146.191951 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.18863 -39.75808 -37.36225 -35.96664 -34.84687 -34.06623 -31.97746 -30.29413 -27.77600 -27.23406 -26.53320 -24.67961 -23.58592 -21.30934 -20.84286 -20.50089 -20.11292 -18.73094 -17.87604 -17.24454 -16.97908 -16.63079 -16.23684 -15.74624 -15.63824 -15.23102 -15.10036 -14.67552 -14.43800 -14.12394 -13.90764 -13.58448 -13.34885 -13.19710 -12.93139 -12.85128 -12.57788 -12.48478 -12.24951 -11.91982 -11.87140 -11.81139 -11.71566 -11.49684 -11.30115 -10.90026 -10.79111 -10.31110 -10.02045 -9.91634 -8.88009 -7.91456 -5.21923 1.37762 1.43307 1.44623 1.47121 1.53374 1.72054 2.30345 2.47305 3.29063 3.45093 3.66363 3.75586 3.78867 3.98814 4.01912 4.20368 4.36047 4.40319 4.48994 4.52148 4.53835 4.64139 4.77326 4.79762 4.89473 4.92732 5.01468 5.07605 5.08876 5.11687 5.16035 5.26564 5.28774 5.47354 5.56183 5.64311 5.80018 5.81514 5.92677 5.95162 5.96079 6.64033 6.93603 7.32405 7.61938 8.58522 9.25899 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021523 B = 0.003988 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.600630 B = 7019.368841 C = 7685.983261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.181 4.181 3 C -0.074 4.074 4 C -0.091 4.091 5 C -0.074 4.074 6 C -0.156 4.156 7 C -0.188 4.188 8 C 0.507 3.493 9 O -0.594 6.594 10 N -0.708 5.708 11 C 0.157 3.843 12 C -0.119 4.119 13 C 0.166 3.834 14 N -0.644 5.644 15 C -0.234 4.234 16 H 0.080 0.920 17 C -0.067 4.067 18 N -0.950 5.950 19 Si 0.972 3.028 20 H -0.286 1.286 21 H -0.296 1.296 22 H -0.270 1.270 23 C 0.125 3.875 24 H 0.094 0.906 25 H 0.112 0.888 26 H 0.126 0.874 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.411 0.589 36 H 0.065 0.935 37 H 0.029 0.971 38 H 0.112 0.888 39 H 0.024 0.976 40 H 0.037 0.963 41 H 0.247 0.753 42 H 0.052 0.948 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 8.131 -19.779 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.199 4.199 3 C -0.112 4.112 4 C -0.112 4.112 5 C -0.111 4.111 6 C -0.174 4.174 7 C -0.225 4.225 8 C 0.295 3.705 9 O -0.475 6.475 10 N -0.362 5.362 11 C 0.033 3.967 12 C -0.138 4.138 13 C 0.040 3.960 14 N -0.371 5.371 15 C -0.362 4.362 16 H 0.097 0.903 17 C -0.260 4.260 18 N -0.599 5.599 19 Si 0.801 3.199 20 H -0.213 1.213 21 H -0.222 1.222 22 H -0.195 1.195 23 C 0.000 4.000 24 H 0.113 0.887 25 H 0.130 0.870 26 H 0.143 0.857 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.132 0.868 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.113 0.887 35 H 0.251 0.749 36 H 0.083 0.917 37 H 0.048 0.952 38 H 0.129 0.871 39 H 0.042 0.958 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.549 8.665 -18.967 20.860 hybrid contribution 0.351 -0.874 1.250 1.565 sum -0.198 7.792 -17.717 19.356 Atomic orbital electron populations 1.24082 0.95970 1.02685 0.98901 1.23124 0.96522 0.98713 1.01499 1.20705 0.97033 0.96058 0.97362 1.21331 0.97195 1.01654 0.90983 1.20504 0.96821 0.96586 0.97237 1.22906 0.99226 1.00260 0.95011 1.24018 1.01379 0.98107 0.98960 1.21332 0.79148 0.81215 0.88795 1.90664 1.66556 1.37327 1.52929 1.46183 1.43967 1.24894 1.21125 1.20735 0.93655 0.96926 0.85398 1.23140 0.97237 0.94690 0.98758 1.22232 0.97424 0.93160 0.83150 1.46402 1.28579 1.60098 1.02010 1.19401 1.12142 1.20690 0.83986 0.90270 1.25576 0.99218 0.99924 1.01273 1.69994 1.23266 1.35416 1.31197 0.85144 0.76629 0.78110 0.80023 1.21288 1.22237 1.19485 1.22763 0.91362 0.95881 0.90040 0.88738 0.87022 0.85663 0.91735 0.87867 0.86817 0.91723 0.92169 0.86005 0.86831 0.88706 0.74947 0.91656 0.95236 0.87060 0.95814 0.94449 0.94404 0.92955 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 13.84 67.78 0.94 -1.73 16 2 C -0.18 -2.73 6.75 25.65 0.17 -2.55 16 3 C -0.07 -1.20 5.03 29.85 0.15 -1.05 16 4 C -0.09 -1.94 2.25 -11.54 -0.03 -1.97 16 5 C -0.07 -1.60 4.49 29.85 0.13 -1.47 16 6 C -0.16 -2.49 8.43 25.64 0.22 -2.27 16 7 C -0.19 -2.58 14.32 67.78 0.97 -1.61 16 8 C 0.51 15.86 7.14 87.66 0.63 16.48 16 9 O -0.59 -24.09 15.91 -3.03 -0.05 -24.14 16 10 N -0.71 -21.14 5.10 -463.05 -2.36 -23.50 16 11 C 0.16 5.67 5.42 86.38 0.47 6.14 16 12 C -0.12 -4.09 3.99 -10.13 -0.04 -4.13 16 13 C 0.17 7.63 6.97 86.44 0.60 8.23 16 14 N -0.64 -33.10 3.58 -716.07 -2.57 -35.66 16 15 C -0.23 -13.45 10.70 84.04 0.90 -12.55 16 16 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 17 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 18 N -0.95 -58.10 11.48 21.65 0.25 -57.85 16 19 Si 0.97 47.09 29.56 68.60 2.03 49.12 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 21 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 23 C 0.12 4.84 8.51 86.49 0.74 5.57 16 24 H 0.09 1.43 7.84 -2.91 -0.02 1.41 16 25 H 0.11 1.43 8.06 -2.91 -0.02 1.41 16 26 H 0.13 1.64 8.06 -2.91 -0.02 1.61 16 27 H 0.06 1.14 7.79 -2.39 -0.02 1.13 16 28 H 0.10 1.33 7.21 -2.39 -0.02 1.32 16 29 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 1.49 7.79 -2.39 -0.02 1.47 16 31 H 0.06 1.58 7.93 -2.39 -0.02 1.56 16 32 H 0.12 1.64 8.06 -2.91 -0.02 1.61 16 33 H 0.11 1.18 8.06 -2.91 -0.02 1.15 16 34 H 0.09 1.32 7.84 -2.91 -0.02 1.29 16 35 H 0.41 10.07 5.57 -92.71 -0.52 9.55 16 36 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.03 1.37 7.98 -2.39 -0.02 1.35 16 38 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 39 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.04 1.96 7.27 -2.39 -0.02 1.94 16 41 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 42 H 0.05 1.95 8.10 -2.39 -0.02 1.93 16 43 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -73.31 354.70 4.06 -69.25 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.45 Total: 19.13 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 6.31 Total: 3.65 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -4.68 Total: -117.02 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.05 Total: -24.14 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -73.31 4.06 -69.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567831327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.755 kcal (2) G-P(sol) polarization free energy of solvation -73.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds