Wall clock time and date at job start Tue Mar 31 2020 00:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47261 * 2 1 4 4 C 1.53003 * 109.47156 * 240.00104 * 2 1 3 5 5 C 1.50700 * 109.47331 * 120.00122 * 2 1 3 6 6 C 1.32991 * 119.99978 * 359.97438 * 5 2 1 7 7 C 1.47104 * 119.99958 * 179.97438 * 6 5 2 8 8 O 1.21613 * 120.00035 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99657 * 180.27470 * 7 6 5 10 10 C 1.47869 * 126.94858 * 359.41833 * 9 7 6 11 11 C 1.55998 * 105.11578 * 181.87409 * 10 9 7 12 12 H 1.08995 * 116.81154 * 159.41963 * 11 10 9 13 13 C 1.57082 * 99.47824 * 33.15692 * 11 10 9 14 14 C 1.49293 * 126.94098 * 179.72555 * 9 7 6 15 15 H 1.08993 * 116.15598 * 16.70251 * 14 9 7 16 16 C 1.56026 * 104.08983 * 247.56195 * 14 9 7 17 17 N 1.49289 * 104.31447 * 289.10611 * 11 10 9 18 18 C 1.36943 * 126.94767 * 246.61483 * 17 11 10 19 19 H 1.08000 * 119.99259 * 0.02562 * 18 17 11 20 20 C 1.38805 * 120.00139 * 180.02562 * 18 17 11 21 21 N 1.31625 * 119.99970 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00037 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46692 * 90.00272 * 22 20 18 24 24 H 1.48497 * 109.47364 * 210.00302 * 22 20 18 25 25 H 1.48495 * 109.47163 * 330.00382 * 22 20 18 26 26 H 1.09002 * 109.46787 * 299.99786 * 1 2 3 27 27 H 1.08991 * 109.46992 * 59.99705 * 1 2 3 28 28 H 1.09003 * 109.46587 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47244 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47269 * 300.00240 * 3 2 1 31 31 H 1.08997 * 109.47440 * 60.00145 * 3 2 1 32 32 H 1.09005 * 109.46932 * 299.99865 * 4 2 1 33 33 H 1.08996 * 109.47248 * 59.99514 * 4 2 1 34 34 H 1.08996 * 109.47200 * 180.02562 * 4 2 1 35 35 H 1.08001 * 120.00300 * 180.02562 * 5 2 1 36 36 H 1.08002 * 120.00252 * 0.02562 * 6 5 2 37 37 H 1.09005 * 110.31240 * 300.90381 * 10 9 7 38 38 H 1.08994 * 110.31567 * 63.08430 * 10 9 7 39 39 H 1.08992 * 112.36801 * 191.51287 * 13 11 10 40 40 H 1.09001 * 112.44230 * 64.09730 * 13 11 10 41 41 H 1.08995 * 110.31577 * 47.67710 * 16 14 9 42 42 H 1.09004 * 110.31101 * 169.86039 * 16 14 9 43 43 H 0.96998 * 119.99574 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1682 -1.2154 2.1061 7 6 1.6586 -1.9094 3.3069 8 8 2.8543 -2.0209 3.4991 9 7 0.7828 -2.4260 4.1915 10 6 -0.6930 -2.3741 4.1149 11 6 -1.1928 -3.0791 5.4136 12 1 -2.2110 -2.8568 5.7330 13 6 -0.0419 -2.6575 6.3961 14 6 1.1067 -3.1608 5.4501 15 1 2.1256 -3.0519 5.8214 16 6 0.6254 -4.6189 5.1732 17 7 -0.8708 -4.5208 5.1983 18 6 -1.7619 -5.5496 5.0470 19 1 -2.8234 -5.3533 5.0780 20 6 -1.3007 -6.8445 4.8539 21 7 -0.0069 -7.0836 4.8167 22 14 -2.5162 -8.2479 4.6482 23 1 -2.8412 -8.4142 3.2087 24 1 -1.9163 -9.5027 5.1684 25 1 -3.7575 -7.9424 5.4037 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 3.0942 -0.8088 1.4016 36 1 0.1064 -1.1168 1.9353 37 1 -1.0344 -1.3393 4.0885 38 1 -1.0454 -2.9122 3.2349 39 1 -0.0765 -3.2082 7.3360 40 1 -0.0052 -1.5799 6.5560 41 1 0.9834 -4.9574 4.2009 42 1 0.9740 -5.2882 5.9597 43 1 0.3153 -7.9885 4.6813 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567854085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:20 Heat of formation + Delta-G solvation = 28.095751 kcal Electronic energy + Delta-G solvation = -22291.033960 eV Core-core repulsion = 19145.041125 eV Total energy + Delta-G solvation = -3145.992835 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.98281 -38.36527 -37.23317 -33.52764 -31.83157 -30.99125 -28.98590 -28.46710 -27.48291 -27.39583 -25.18633 -24.19459 -22.77020 -20.36175 -19.80958 -18.57058 -17.93730 -17.36928 -16.38436 -15.70085 -15.07007 -14.92889 -14.53538 -14.25816 -14.12537 -13.81543 -13.29114 -13.07895 -12.51041 -12.27580 -12.25672 -12.05525 -11.84839 -11.83038 -11.59746 -11.29762 -11.18513 -11.09909 -10.96878 -10.84621 -10.80834 -10.73479 -10.55216 -10.26122 -10.06175 -9.60150 -9.41978 -9.27187 -8.71176 -7.93521 -6.92508 -5.75716 -3.10071 1.62938 3.37586 3.42237 3.44929 3.47668 3.75216 4.42284 4.51789 4.65708 4.83399 4.95721 5.14965 5.20743 5.30329 5.36907 5.40878 5.45176 5.50170 5.57999 5.61494 5.66306 5.70982 5.72680 5.79949 5.88424 5.94154 5.98664 6.09362 6.14658 6.19075 6.29637 6.39829 6.43957 6.58469 6.60728 6.61752 6.78844 7.42838 7.49915 7.71594 8.06610 8.17397 8.68235 9.08124 9.71501 10.40678 11.36759 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020875 B = 0.004443 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.018135 B = 6299.872235 C = 6811.263236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C -0.137 4.137 4 C -0.139 4.139 5 C -0.070 4.070 6 C -0.202 4.202 7 C 0.557 3.443 8 O -0.564 6.564 9 N -0.602 5.602 10 C 0.085 3.915 11 C 0.142 3.858 12 H 0.107 0.893 13 C -0.151 4.151 14 C 0.096 3.904 15 H 0.111 0.889 16 C 0.176 3.824 17 N -0.600 5.600 18 C -0.231 4.231 19 H 0.080 0.920 20 C -0.006 4.006 21 N -0.920 5.920 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.058 0.942 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 15.432 -6.744 16.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.046 4.046 3 C -0.194 4.194 4 C -0.196 4.196 5 C -0.090 4.090 6 C -0.223 4.223 7 C 0.348 3.652 8 O -0.445 6.445 9 N -0.334 5.334 10 C -0.041 4.041 11 C 0.033 3.967 12 H 0.124 0.876 13 C -0.191 4.191 14 C -0.006 4.006 15 H 0.129 0.871 16 C 0.052 3.948 17 N -0.325 5.325 18 C -0.359 4.359 19 H 0.098 0.902 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.743 3.257 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.206 1.206 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.896 15.090 -6.731 16.548 hybrid contribution -0.645 -0.907 -0.237 1.138 sum 0.250 14.183 -6.968 15.804 Atomic orbital electron populations 1.22002 0.94114 1.02429 1.01934 1.19741 0.95956 0.95397 0.93530 1.21818 1.01277 0.94387 1.01930 1.21829 1.01295 1.00549 0.95906 1.23600 1.00198 0.92465 0.92705 1.22837 1.00869 1.02739 0.95853 1.18194 0.85280 0.78793 0.82980 1.90728 1.15545 1.61104 1.77131 1.49101 1.07073 1.54315 1.22896 1.23266 0.79581 0.98988 1.02215 1.23134 0.96543 0.86026 0.91011 0.87561 1.24151 0.97065 0.99422 0.98446 1.24346 0.98471 0.94723 0.83104 0.87092 1.22270 0.82853 0.88792 1.00880 1.45746 1.01798 1.00542 1.84413 1.19061 0.88189 0.85620 1.43035 0.90197 1.24806 0.96093 0.97352 1.02034 1.69911 1.11261 1.19808 1.55676 0.86123 0.79904 0.81993 0.77726 1.21659 1.21689 1.20647 0.92151 0.92368 0.91930 0.92324 0.92254 0.92402 0.92202 0.92237 0.92303 0.85829 0.85437 0.92866 0.91146 0.89813 0.91685 0.93313 0.92413 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 7.13 37.16 0.26 -1.14 16 2 C -0.05 -0.47 0.99 -155.66 -0.15 -0.62 16 3 C -0.14 -1.18 8.46 37.16 0.31 -0.86 16 4 C -0.14 -1.30 8.46 37.16 0.31 -0.99 16 5 C -0.07 -0.93 8.33 -36.13 -0.30 -1.23 16 6 C -0.20 -3.08 8.56 -37.81 -0.32 -3.41 16 7 C 0.56 10.80 7.84 -12.66 -0.10 10.70 16 8 O -0.56 -12.61 16.57 5.27 0.09 -12.52 16 9 N -0.60 -11.58 2.94 -158.16 -0.46 -12.05 16 10 C 0.09 1.48 5.62 -1.69 -0.01 1.47 16 11 C 0.14 2.65 5.52 -62.56 -0.35 2.30 16 12 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 13 C -0.15 -2.61 6.82 -22.30 -0.15 -2.76 16 14 C 0.10 1.92 5.18 -62.55 -0.32 1.60 16 15 H 0.11 2.18 8.06 -51.93 -0.42 1.76 16 16 C 0.18 4.31 4.88 -0.49 0.00 4.31 16 17 N -0.60 -14.56 3.07 -154.64 -0.47 -15.03 16 18 C -0.23 -6.17 10.38 -15.06 -0.16 -6.33 16 19 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 20 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 21 N -0.92 -27.00 10.57 55.49 0.59 -26.41 16 22 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H 0.06 0.56 7.50 -51.93 -0.39 0.17 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.64 7.50 -51.93 -0.39 0.25 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.12 1.79 7.49 -52.49 -0.39 1.39 16 36 H 0.13 1.72 5.15 -52.49 -0.27 1.45 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.05 1.37 7.73 -51.93 -0.40 0.97 16 42 H 0.06 1.54 7.47 -51.93 -0.39 1.15 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -31.67 342.40 -8.47 -40.14 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.27 Total: 1.19 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -1.07 Total: 2.78 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.35 Total: -53.49 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.67 -8.47 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567854085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.233 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds