Wall clock time and date at job start Tue Mar 31 2020 00:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47261 * 2 1 4 4 C 1.53003 * 109.47156 * 240.00104 * 2 1 3 5 5 C 1.50700 * 109.47331 * 120.00122 * 2 1 3 6 6 C 1.32991 * 119.99978 * 359.97438 * 5 2 1 7 7 C 1.47104 * 119.99958 * 179.97438 * 6 5 2 8 8 O 1.21613 * 120.00035 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99657 * 180.27470 * 7 6 5 10 10 C 1.47869 * 126.94858 * 359.41833 * 9 7 6 11 11 C 1.55998 * 105.11578 * 181.87409 * 10 9 7 12 12 H 1.08995 * 116.81154 * 159.41963 * 11 10 9 13 13 C 1.57082 * 99.47824 * 33.15692 * 11 10 9 14 14 C 1.49293 * 126.94098 * 179.72555 * 9 7 6 15 15 H 1.08993 * 116.15598 * 16.70251 * 14 9 7 16 16 C 1.56026 * 104.08983 * 247.56195 * 14 9 7 17 17 N 1.49289 * 104.31447 * 289.10611 * 11 10 9 18 18 C 1.36943 * 126.94767 * 246.61483 * 17 11 10 19 19 H 1.08000 * 119.99259 * 0.02562 * 18 17 11 20 20 C 1.38805 * 120.00139 * 180.02562 * 18 17 11 21 21 N 1.31625 * 119.99970 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00037 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46692 * 90.00272 * 22 20 18 24 24 H 1.48497 * 109.47364 * 210.00302 * 22 20 18 25 25 H 1.48495 * 109.47163 * 330.00382 * 22 20 18 26 26 H 1.09002 * 109.46787 * 299.99786 * 1 2 3 27 27 H 1.08991 * 109.46992 * 59.99705 * 1 2 3 28 28 H 1.09003 * 109.46587 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47244 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47269 * 300.00240 * 3 2 1 31 31 H 1.08997 * 109.47440 * 60.00145 * 3 2 1 32 32 H 1.09005 * 109.46932 * 299.99865 * 4 2 1 33 33 H 1.08996 * 109.47248 * 59.99514 * 4 2 1 34 34 H 1.08996 * 109.47200 * 180.02562 * 4 2 1 35 35 H 1.08001 * 120.00300 * 180.02562 * 5 2 1 36 36 H 1.08002 * 120.00252 * 0.02562 * 6 5 2 37 37 H 1.09005 * 110.31240 * 300.90381 * 10 9 7 38 38 H 1.08994 * 110.31567 * 63.08430 * 10 9 7 39 39 H 1.08992 * 112.36801 * 191.51287 * 13 11 10 40 40 H 1.09001 * 112.44230 * 64.09730 * 13 11 10 41 41 H 1.08995 * 110.31577 * 47.67710 * 16 14 9 42 42 H 1.09004 * 110.31101 * 169.86039 * 16 14 9 43 43 H 0.96998 * 119.99574 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1682 -1.2154 2.1061 7 6 1.6586 -1.9094 3.3069 8 8 2.8543 -2.0209 3.4991 9 7 0.7828 -2.4260 4.1915 10 6 -0.6930 -2.3741 4.1149 11 6 -1.1928 -3.0791 5.4136 12 1 -2.2110 -2.8568 5.7330 13 6 -0.0419 -2.6575 6.3961 14 6 1.1067 -3.1608 5.4501 15 1 2.1256 -3.0519 5.8214 16 6 0.6254 -4.6189 5.1732 17 7 -0.8708 -4.5208 5.1983 18 6 -1.7619 -5.5496 5.0470 19 1 -2.8234 -5.3533 5.0780 20 6 -1.3007 -6.8445 4.8539 21 7 -0.0069 -7.0836 4.8167 22 14 -2.5162 -8.2479 4.6482 23 1 -2.8412 -8.4142 3.2087 24 1 -1.9163 -9.5027 5.1684 25 1 -3.7575 -7.9424 5.4037 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 3.0942 -0.8088 1.4016 36 1 0.1064 -1.1168 1.9353 37 1 -1.0344 -1.3393 4.0885 38 1 -1.0454 -2.9122 3.2349 39 1 -0.0765 -3.2082 7.3360 40 1 -0.0052 -1.5799 6.5560 41 1 0.9834 -4.9574 4.2009 42 1 0.9740 -5.2882 5.9597 43 1 0.3153 -7.9885 4.6813 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567854085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:19 Heat of formation + Delta-G solvation = 9.588342 kcal Electronic energy + Delta-G solvation = -22291.836501 eV Core-core repulsion = 19145.041125 eV Total energy + Delta-G solvation = -3146.795376 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.53998 -39.66742 -38.41714 -35.40509 -33.44286 -32.34374 -30.64391 -30.20762 -28.21868 -28.09458 -26.96021 -25.74279 -24.26870 -21.79808 -21.42243 -20.05305 -19.08941 -18.93262 -18.02487 -17.34978 -16.63505 -16.21852 -15.95110 -15.62801 -15.17206 -15.07148 -14.71125 -14.66267 -13.81195 -13.61981 -13.43261 -13.17753 -13.15224 -13.06263 -12.86130 -12.85017 -12.70379 -12.54821 -12.32942 -12.16593 -12.04482 -11.94256 -11.91755 -11.90139 -11.61016 -11.50456 -10.98874 -10.71437 -10.42988 -9.51533 -8.92161 -7.84277 -5.20066 0.40230 1.46845 1.48408 1.57139 2.01079 2.33700 2.48669 3.30404 3.35650 3.50708 3.74886 3.84119 3.89649 4.02528 4.08075 4.09580 4.19638 4.26043 4.44081 4.57719 4.67112 4.75346 4.79504 4.82655 4.90635 4.91775 5.00353 5.00627 5.02698 5.12402 5.13670 5.22177 5.24058 5.29203 5.40056 5.43216 5.44514 5.56006 5.59914 5.64904 6.06477 6.67737 6.99372 7.17105 7.69378 8.41245 9.27510 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020875 B = 0.004443 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.018135 B = 6299.872235 C = 6811.263236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C -0.134 4.134 4 C -0.139 4.139 5 C -0.048 4.048 6 C -0.221 4.221 7 C 0.547 3.453 8 O -0.606 6.606 9 N -0.606 5.606 10 C 0.092 3.908 11 C 0.137 3.863 12 H 0.139 0.861 13 C -0.128 4.128 14 C 0.097 3.903 15 H 0.109 0.891 16 C 0.189 3.811 17 N -0.620 5.620 18 C -0.229 4.229 19 H 0.097 0.903 20 C -0.073 4.073 21 N -0.959 5.959 22 Si 0.978 3.022 23 H -0.291 1.291 24 H -0.302 1.302 25 H -0.261 1.261 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.149 0.851 37 H 0.102 0.898 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.103 0.897 41 H -0.004 1.004 42 H 0.021 0.979 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.993 18.333 -7.450 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.045 4.045 3 C -0.192 4.192 4 C -0.196 4.196 5 C -0.068 4.068 6 C -0.241 4.241 7 C 0.340 3.660 8 O -0.490 6.490 9 N -0.338 5.338 10 C -0.032 4.032 11 C 0.031 3.969 12 H 0.156 0.844 13 C -0.167 4.167 14 C -0.007 4.007 15 H 0.127 0.873 16 C 0.063 3.937 17 N -0.345 5.345 18 C -0.358 4.358 19 H 0.115 0.885 20 C -0.265 4.265 21 N -0.609 5.609 22 Si 0.806 3.194 23 H -0.218 1.218 24 H -0.229 1.229 25 H -0.185 1.185 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.126 0.874 36 H 0.167 0.833 37 H 0.120 0.880 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.121 0.879 41 H 0.015 0.985 42 H 0.039 0.961 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.392 18.048 -7.431 19.568 hybrid contribution 0.102 -1.747 -0.065 1.751 sum -1.291 16.302 -7.496 17.989 Atomic orbital electron populations 1.22009 0.93176 1.02104 1.03182 1.19841 0.96740 0.96067 0.91858 1.21813 1.01334 0.93043 1.02967 1.21850 1.01398 0.99980 0.96398 1.23895 0.99290 0.90413 0.93187 1.22745 1.02108 1.04337 0.94919 1.18943 0.84801 0.78505 0.83747 1.90695 1.17314 1.62930 1.78105 1.49199 1.08107 1.53887 1.22585 1.23212 0.78172 1.01316 1.00492 1.23577 0.98697 0.82625 0.92049 0.84361 1.24053 0.94034 1.01474 0.97139 1.24179 0.99542 0.92035 0.84932 0.87288 1.21843 0.83865 0.91177 0.96774 1.46010 1.01235 1.02905 1.84311 1.19580 0.89358 0.86290 1.40582 0.88530 1.25664 0.97532 1.00132 1.03169 1.70163 1.13345 1.19353 1.58037 0.85079 0.78380 0.78460 0.77433 1.21801 1.22906 1.18526 0.91712 0.90374 0.93031 0.92347 0.90174 0.92427 0.93542 0.89994 0.92278 0.87439 0.83334 0.88028 0.92955 0.90020 0.87903 0.98527 0.96053 0.94776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 7.13 71.98 0.51 -1.84 16 2 C -0.04 -0.81 0.99 -52.93 -0.05 -0.86 16 3 C -0.13 -1.91 8.46 71.98 0.61 -1.30 16 4 C -0.14 -2.33 8.46 71.98 0.61 -1.72 16 5 C -0.05 -1.23 8.33 24.52 0.20 -1.03 16 6 C -0.22 -6.50 8.56 23.43 0.20 -6.30 16 7 C 0.55 21.32 7.84 86.57 0.68 22.00 16 8 O -0.61 -27.97 16.57 -4.07 -0.07 -28.03 16 9 N -0.61 -23.04 2.94 -772.55 -2.27 -25.31 16 10 C 0.09 2.98 5.62 87.16 0.49 3.47 16 11 C 0.14 4.76 5.52 46.92 0.26 5.02 16 12 H 0.14 3.97 8.14 -2.39 -0.02 3.95 16 13 C -0.13 -4.10 6.82 33.46 0.23 -3.87 16 14 C 0.10 3.90 5.18 46.93 0.24 4.15 16 15 H 0.11 4.41 8.06 -2.39 -0.02 4.39 16 16 C 0.19 9.71 4.88 86.75 0.42 10.13 16 17 N -0.62 -30.14 3.07 -643.17 -1.97 -32.11 16 18 C -0.23 -12.23 10.38 84.03 0.87 -11.36 16 19 H 0.10 4.72 7.83 -2.91 -0.02 4.70 16 20 C -0.07 -4.11 5.49 84.86 0.47 -3.65 16 21 N -0.96 -59.30 10.57 21.65 0.23 -59.07 16 22 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 24 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 25 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 26 H 0.06 0.98 7.50 -2.39 -0.02 0.97 16 27 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 0.94 7.50 -2.39 -0.02 0.92 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.11 3.13 7.49 -2.91 -0.02 3.11 16 36 H 0.15 3.69 5.15 -2.91 -0.01 3.67 16 37 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 38 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.00 -0.21 7.73 -2.39 -0.02 -0.23 16 42 H 0.02 1.22 7.47 -2.38 -0.02 1.21 16 43 H 0.24 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -73.28 342.40 4.65 -68.63 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.97 Total: 15.54 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 5.74 Total: 12.84 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -4.01 Total: -116.50 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.07 Total: -28.03 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -73.28 4.65 -68.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567854085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.214 kcal (2) G-P(sol) polarization free energy of solvation -73.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds