Wall clock time and date at job start Tue Mar 31 2020 00:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.47103 * 120.00105 * 2 1 4 4 O 1.21611 * 120.00040 * 179.97438 * 3 2 1 5 5 N 1.34781 * 119.99949 * 359.97438 * 3 2 1 6 6 C 1.46499 * 119.99874 * 179.97438 * 5 3 2 7 7 H 1.09002 * 109.47391 * 325.00213 * 6 5 3 8 8 C 1.53002 * 109.46799 * 205.00309 * 6 5 3 9 9 N 1.46491 * 109.47485 * 55.00265 * 8 6 5 10 10 C 1.36934 * 120.00588 * 179.97438 * 9 8 6 11 11 H 1.07997 * 119.99419 * 0.02562 * 10 9 8 12 12 C 1.38807 * 120.00390 * 179.97438 * 10 9 8 13 13 N 1.31616 * 120.00224 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99964 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46973 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47158 * 119.99872 * 14 12 10 17 17 H 1.48496 * 109.47300 * 239.99771 * 14 12 10 18 18 C 1.53000 * 109.46840 * 85.00543 * 6 5 3 19 19 C 1.52995 * 117.50099 * 8.74246 * 18 6 5 20 20 C 1.53004 * 117.50029 * 300.08239 * 18 6 5 21 21 C 1.32992 * 120.00249 * 180.02562 * 2 1 3 22 22 C 1.51403 * 136.32174 * 179.62683 * 21 2 1 23 23 C 1.53376 * 87.52048 * 206.05694 * 22 21 2 24 24 C 1.51408 * 136.31271 * 359.97438 * 21 2 1 25 25 H 1.09004 * 109.47212 * 89.99489 * 1 2 3 26 26 H 1.08994 * 109.47086 * 209.99613 * 1 2 3 27 27 H 1.08995 * 109.47229 * 330.00139 * 1 2 3 28 28 H 0.97002 * 119.99716 * 0.02562 * 5 3 2 29 29 H 1.09002 * 109.46816 * 175.00414 * 8 6 5 30 30 H 1.09000 * 109.47059 * 295.00070 * 8 6 5 31 31 H 0.97008 * 119.99775 * 359.97438 * 9 8 6 32 32 H 0.97004 * 120.00468 * 179.97438 * 13 12 10 33 33 H 1.09003 * 115.54875 * 154.42021 * 18 6 5 34 34 H 1.08997 * 117.49775 * 0.02562 * 19 18 6 35 35 H 1.09000 * 117.49863 * 145.02467 * 19 18 6 36 36 H 1.08993 * 117.49963 * 214.98702 * 20 18 6 37 37 H 1.08999 * 117.49372 * 359.97438 * 20 18 6 38 38 H 1.09002 * 113.55949 * 320.64371 * 22 21 2 39 39 H 1.09005 * 113.55923 * 91.37225 * 22 21 2 40 40 H 1.09004 * 113.96550 * 220.28866 * 23 22 21 41 41 H 1.09002 * 113.59816 * 88.79953 * 23 22 21 42 42 H 1.08996 * 113.56421 * 268.62878 * 24 21 2 43 43 H 1.09002 * 113.56159 * 39.36443 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4586 1.2739 0.0005 5 7 1.5686 2.4412 -0.0005 6 6 2.3011 3.7099 0.0000 7 1 3.2114 3.6036 0.5902 8 6 1.4235 4.8052 0.6091 9 7 0.9759 4.3886 1.9403 10 6 0.1737 5.2137 2.6824 11 1 -0.1293 6.1715 2.2860 12 6 -0.2508 4.8187 3.9436 13 7 0.1173 3.6508 4.4260 14 14 -1.3457 5.9442 4.9555 15 1 -1.6157 7.1892 4.1925 16 1 -2.6284 5.2552 5.2477 17 1 -0.6640 6.2825 6.2307 18 6 2.6660 4.0887 -1.4367 19 6 2.0582 3.2517 -2.5640 20 6 3.5441 3.1133 -2.2232 21 6 2.1720 -1.1517 -0.0005 22 6 3.6250 -1.5772 -0.0075 23 6 3.1707 -2.8815 -0.6744 24 6 1.8138 -2.6228 -0.0007 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8899 0.5138 28 1 0.5986 2.4411 -0.0005 29 1 1.9983 5.7276 0.6912 30 1 0.5564 4.9731 -0.0297 31 1 1.2478 3.5281 2.2961 32 1 -0.1790 3.3749 5.3075 33 1 2.8075 5.1537 -1.6206 34 1 1.3981 2.4315 -2.2822 35 1 1.8002 3.7660 -3.4898 36 1 4.2629 3.5366 -2.9247 37 1 3.8622 2.2020 -1.7169 38 1 4.2566 -0.9599 -0.6464 39 1 4.0420 -1.7197 0.9895 40 1 3.6835 -3.7696 -0.3049 41 1 3.1399 -2.8275 -1.7626 42 1 1.7343 -3.0521 0.9980 43 1 0.9599 -2.8633 -0.6341 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569303419.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:23 Heat of formation + Delta-G solvation = 38.324854 kcal Electronic energy + Delta-G solvation = -22239.437367 eV Core-core repulsion = 19093.888099 eV Total energy + Delta-G solvation = -3145.549268 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.11002 -38.62577 -36.84010 -34.86999 -33.60442 -32.58781 -30.93250 -28.07435 -26.50254 -25.49738 -24.12836 -23.09698 -22.19287 -21.46019 -20.73139 -19.51795 -18.08291 -17.13434 -16.28955 -15.98922 -15.83135 -15.46372 -14.82987 -14.30825 -14.17289 -13.61839 -13.43707 -13.14771 -12.96103 -12.69047 -12.44024 -12.30341 -12.10445 -11.91662 -11.59921 -11.53340 -11.30727 -11.15299 -10.96949 -10.87917 -10.83417 -10.43924 -10.17683 -10.03262 -9.78146 -9.53411 -9.31786 -8.91422 -8.75711 -8.49344 -6.95384 -5.77736 -3.07527 1.53013 3.41949 3.47734 3.49616 3.50304 3.60069 4.11098 4.43823 4.53242 4.57892 4.72239 4.96393 5.05417 5.12975 5.23700 5.26072 5.36191 5.53571 5.54868 5.61054 5.62919 5.69570 5.71471 5.76889 5.87853 5.88970 5.96334 6.06444 6.06942 6.10106 6.20474 6.27204 6.36447 6.39961 6.52993 6.58179 6.73136 6.80236 7.02433 7.68924 7.97922 8.39965 8.64755 9.51916 10.08116 10.43718 11.44590 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015899 B = 0.005068 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.662129 B = 5523.498788 C = 6756.930504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.155 4.155 3 C 0.559 3.441 4 O -0.544 6.544 5 N -0.704 5.704 6 C 0.168 3.832 7 H 0.090 0.910 8 C 0.148 3.852 9 N -0.732 5.732 10 C -0.241 4.241 11 H 0.071 0.929 12 C -0.012 4.012 13 N -0.930 5.930 14 Si 0.906 3.094 15 H -0.280 1.280 16 H -0.292 1.292 17 H -0.292 1.292 18 C -0.160 4.160 19 C -0.177 4.177 20 C -0.187 4.187 21 C -0.079 4.079 22 C -0.099 4.099 23 C -0.142 4.142 24 C -0.104 4.104 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.404 0.596 29 H 0.034 0.966 30 H 0.026 0.974 31 H 0.386 0.614 32 H 0.254 0.746 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.133 -10.295 -13.513 17.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.158 4.158 3 C 0.348 3.652 4 O -0.424 6.424 5 N -0.355 5.355 6 C 0.063 3.937 7 H 0.108 0.892 8 C 0.020 3.980 9 N -0.376 5.376 10 C -0.372 4.372 11 H 0.089 0.911 12 C -0.208 4.208 13 N -0.579 5.579 14 Si 0.738 3.262 15 H -0.206 1.206 16 H -0.219 1.219 17 H -0.219 1.219 18 C -0.180 4.180 19 C -0.215 4.215 20 C -0.224 4.224 21 C -0.081 4.081 22 C -0.136 4.136 23 C -0.179 4.179 24 C -0.141 4.141 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.241 0.759 29 H 0.051 0.949 30 H 0.043 0.957 31 H 0.220 0.780 32 H 0.064 0.936 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.135 0.865 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.116 0.884 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.881 -10.116 -13.452 17.273 hybrid contribution -1.082 0.476 0.775 1.413 sum 2.799 -9.640 -12.678 16.170 Atomic orbital electron populations 1.20703 0.90582 1.03623 1.02007 1.20510 0.95895 0.91477 1.07927 1.18163 0.87185 0.83880 0.76021 1.90668 1.13495 1.87702 1.50582 1.45917 1.10692 1.05126 1.73794 1.20729 0.96344 0.83210 0.93373 0.89169 1.20911 0.95130 0.94032 0.87968 1.42362 1.59907 1.21627 1.13750 1.19261 1.22005 0.98941 0.97036 0.91088 1.24741 1.01198 0.97184 0.97677 1.69682 1.49525 1.20321 1.18357 0.86129 0.80053 0.79777 0.80279 1.20555 1.21896 1.21879 1.22698 1.05186 0.97327 0.92754 1.22878 0.96768 1.03112 0.98716 1.23332 0.92871 1.03083 1.03095 1.23122 0.97881 0.93546 0.93564 1.22122 0.94193 0.95582 1.01702 1.22712 0.96839 0.98229 1.00159 1.22262 0.98215 0.92045 1.01598 0.91475 0.91342 0.90687 0.75938 0.94872 0.95656 0.77971 0.93559 0.87375 0.89002 0.89633 0.89892 0.86507 0.89797 0.88733 0.90732 0.90006 0.88421 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.57 36.00 0.34 -1.04 16 2 C -0.16 -2.27 6.00 -102.85 -0.62 -2.89 16 3 C 0.56 9.54 6.59 -12.66 -0.08 9.46 16 4 O -0.54 -10.43 12.18 5.27 0.06 -10.37 16 5 N -0.70 -11.71 3.00 -54.99 -0.16 -11.87 16 6 C 0.17 2.93 2.59 -67.93 -0.18 2.76 16 7 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 8 C 0.15 2.92 5.80 -4.05 -0.02 2.90 16 9 N -0.73 -18.22 5.43 -59.92 -0.33 -18.55 16 10 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 11 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 12 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 13 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 14 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 18 C -0.16 -2.36 5.70 -90.62 -0.52 -2.88 16 19 C -0.18 -2.39 9.74 -26.70 -0.26 -2.65 16 20 C -0.19 -2.70 9.83 -26.69 -0.26 -2.96 16 21 C -0.08 -1.05 6.60 -100.48 -0.66 -1.71 16 22 C -0.10 -1.23 6.99 -27.56 -0.19 -1.42 16 23 C -0.14 -1.33 8.17 -26.19 -0.21 -1.54 16 24 C -0.10 -1.03 7.72 -27.39 -0.21 -1.25 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.77 7.91 -51.93 -0.41 0.36 16 27 H 0.07 1.02 6.70 -51.93 -0.35 0.67 16 28 H 0.40 6.50 6.70 -40.82 -0.27 6.23 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.39 10.31 7.33 -40.82 -0.30 10.01 16 32 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.11 1.47 8.11 -51.93 -0.42 1.05 16 34 H 0.09 1.27 6.67 -51.93 -0.35 0.92 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.12 1.95 5.01 -51.93 -0.26 1.69 16 38 H 0.08 1.15 7.49 -51.93 -0.39 0.77 16 39 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 346.38 15.07 5.22 5.22 Total: -1.00 -31.04 346.38 -9.54 -40.59 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -6.92 Total: 15.51 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -3.12 Total: -10.47 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 0.23 Total: -57.70 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.06 Total: -10.37 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.04 -9.54 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569303419.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.910 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds