Wall clock time and date at job start Tue Mar 31 2020 00:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.47103 * 120.00105 * 2 1 4 4 O 1.21611 * 120.00040 * 179.97438 * 3 2 1 5 5 N 1.34781 * 119.99949 * 359.97438 * 3 2 1 6 6 C 1.46499 * 119.99874 * 179.97438 * 5 3 2 7 7 H 1.09002 * 109.47391 * 325.00213 * 6 5 3 8 8 C 1.53002 * 109.46799 * 205.00309 * 6 5 3 9 9 N 1.46491 * 109.47485 * 55.00265 * 8 6 5 10 10 C 1.36934 * 120.00588 * 179.97438 * 9 8 6 11 11 H 1.07997 * 119.99419 * 0.02562 * 10 9 8 12 12 C 1.38807 * 120.00390 * 179.97438 * 10 9 8 13 13 N 1.31616 * 120.00224 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99964 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46973 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47158 * 119.99872 * 14 12 10 17 17 H 1.48496 * 109.47300 * 239.99771 * 14 12 10 18 18 C 1.53000 * 109.46840 * 85.00543 * 6 5 3 19 19 C 1.52995 * 117.50099 * 8.74246 * 18 6 5 20 20 C 1.53004 * 117.50029 * 300.08239 * 18 6 5 21 21 C 1.32992 * 120.00249 * 180.02562 * 2 1 3 22 22 C 1.51403 * 136.32174 * 179.62683 * 21 2 1 23 23 C 1.53376 * 87.52048 * 206.05694 * 22 21 2 24 24 C 1.51408 * 136.31271 * 359.97438 * 21 2 1 25 25 H 1.09004 * 109.47212 * 89.99489 * 1 2 3 26 26 H 1.08994 * 109.47086 * 209.99613 * 1 2 3 27 27 H 1.08995 * 109.47229 * 330.00139 * 1 2 3 28 28 H 0.97002 * 119.99716 * 0.02562 * 5 3 2 29 29 H 1.09002 * 109.46816 * 175.00414 * 8 6 5 30 30 H 1.09000 * 109.47059 * 295.00070 * 8 6 5 31 31 H 0.97008 * 119.99775 * 359.97438 * 9 8 6 32 32 H 0.97004 * 120.00468 * 179.97438 * 13 12 10 33 33 H 1.09003 * 115.54875 * 154.42021 * 18 6 5 34 34 H 1.08997 * 117.49775 * 0.02562 * 19 18 6 35 35 H 1.09000 * 117.49863 * 145.02467 * 19 18 6 36 36 H 1.08993 * 117.49963 * 214.98702 * 20 18 6 37 37 H 1.08999 * 117.49372 * 359.97438 * 20 18 6 38 38 H 1.09002 * 113.55949 * 320.64371 * 22 21 2 39 39 H 1.09005 * 113.55923 * 91.37225 * 22 21 2 40 40 H 1.09004 * 113.96550 * 220.28866 * 23 22 21 41 41 H 1.09002 * 113.59816 * 88.79953 * 23 22 21 42 42 H 1.08996 * 113.56421 * 268.62878 * 24 21 2 43 43 H 1.09002 * 113.56159 * 39.36443 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4586 1.2739 0.0005 5 7 1.5686 2.4412 -0.0005 6 6 2.3011 3.7099 0.0000 7 1 3.2114 3.6036 0.5902 8 6 1.4235 4.8052 0.6091 9 7 0.9759 4.3886 1.9403 10 6 0.1737 5.2137 2.6824 11 1 -0.1293 6.1715 2.2860 12 6 -0.2508 4.8187 3.9436 13 7 0.1173 3.6508 4.4260 14 14 -1.3457 5.9442 4.9555 15 1 -1.6157 7.1892 4.1925 16 1 -2.6284 5.2552 5.2477 17 1 -0.6640 6.2825 6.2307 18 6 2.6660 4.0887 -1.4367 19 6 2.0582 3.2517 -2.5640 20 6 3.5441 3.1133 -2.2232 21 6 2.1720 -1.1517 -0.0005 22 6 3.6250 -1.5772 -0.0075 23 6 3.1707 -2.8815 -0.6744 24 6 1.8138 -2.6228 -0.0007 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8899 0.5138 28 1 0.5986 2.4411 -0.0005 29 1 1.9983 5.7276 0.6912 30 1 0.5564 4.9731 -0.0297 31 1 1.2478 3.5281 2.2961 32 1 -0.1790 3.3749 5.3075 33 1 2.8075 5.1537 -1.6206 34 1 1.3981 2.4315 -2.2822 35 1 1.8002 3.7660 -3.4898 36 1 4.2629 3.5366 -2.9247 37 1 3.8622 2.2020 -1.7169 38 1 4.2566 -0.9599 -0.6464 39 1 4.0420 -1.7197 0.9895 40 1 3.6835 -3.7696 -0.3049 41 1 3.1399 -2.8275 -1.7626 42 1 1.7343 -3.0521 0.9980 43 1 0.9599 -2.8633 -0.6341 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569303419.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:22 Heat of formation + Delta-G solvation = 20.563295 kcal Electronic energy + Delta-G solvation = -22240.207566 eV Core-core repulsion = 19093.888099 eV Total energy + Delta-G solvation = -3146.319467 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.38348 -39.64227 -38.11800 -36.56205 -35.01898 -33.95113 -32.71538 -29.74018 -27.46394 -26.41176 -26.00447 -24.26833 -23.46130 -22.96348 -21.80813 -20.83348 -19.51337 -18.85985 -17.44363 -17.29026 -17.19096 -16.61395 -16.34390 -15.72041 -15.34844 -15.22551 -15.07232 -14.53082 -14.47606 -13.84032 -13.63514 -13.31773 -13.31040 -13.14570 -12.94780 -12.81011 -12.67996 -12.65052 -12.44633 -12.30137 -12.04630 -11.86260 -11.83105 -11.41465 -11.22092 -11.00410 -10.83046 -10.55659 -9.97951 -9.69265 -9.02078 -7.94351 -5.24471 0.40981 1.48257 1.49042 1.59099 2.21512 2.34386 2.55673 2.94792 3.39560 3.44610 3.59936 3.65654 3.83741 3.97403 4.03416 4.09232 4.17744 4.26545 4.38332 4.45834 4.49350 4.63060 4.74631 4.76125 4.79114 4.82087 4.82251 4.88780 5.00627 5.04589 5.05229 5.09654 5.14429 5.25275 5.37367 5.38021 5.40072 5.50415 5.62269 5.77951 6.25980 6.65442 7.32359 7.33285 8.05895 8.30517 9.28961 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015899 B = 0.005068 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.662129 B = 5523.498788 C = 6756.930504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.183 4.183 3 C 0.551 3.449 4 O -0.574 6.574 5 N -0.702 5.702 6 C 0.178 3.822 7 H 0.058 0.942 8 C 0.151 3.849 9 N -0.743 5.743 10 C -0.244 4.244 11 H 0.079 0.921 12 C -0.073 4.073 13 N -0.969 5.969 14 Si 0.974 3.026 15 H -0.264 1.264 16 H -0.292 1.292 17 H -0.297 1.297 18 C -0.167 4.167 19 C -0.161 4.161 20 C -0.189 4.189 21 C -0.083 4.083 22 C -0.113 4.113 23 C -0.125 4.125 24 C -0.095 4.095 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.407 0.593 29 H 0.037 0.963 30 H 0.040 0.960 31 H 0.373 0.627 32 H 0.250 0.750 33 H 0.125 0.875 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.089 -10.688 -15.013 18.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.186 4.186 3 C 0.342 3.658 4 O -0.456 6.456 5 N -0.352 5.352 6 C 0.073 3.927 7 H 0.076 0.924 8 C 0.024 3.976 9 N -0.386 5.386 10 C -0.375 4.375 11 H 0.097 0.903 12 C -0.265 4.265 13 N -0.619 5.619 14 Si 0.803 3.197 15 H -0.189 1.189 16 H -0.219 1.219 17 H -0.225 1.225 18 C -0.186 4.186 19 C -0.198 4.198 20 C -0.226 4.226 21 C -0.085 4.085 22 C -0.149 4.149 23 C -0.162 4.162 24 C -0.131 4.131 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.244 0.756 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.206 0.794 32 H 0.059 0.941 33 H 0.143 0.857 34 H 0.105 0.895 35 H 0.129 0.871 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.128 0.872 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.827 -10.480 -14.998 18.514 hybrid contribution -0.649 0.587 1.200 1.485 sum 2.178 -9.894 -13.798 17.118 Atomic orbital electron populations 1.20662 0.88992 1.03239 1.03160 1.20580 0.97025 0.90628 1.10334 1.18670 0.87069 0.84781 0.75316 1.90649 1.14779 1.88159 1.52041 1.45870 1.10687 1.04917 1.73748 1.20472 0.94498 0.83023 0.94746 0.92379 1.21026 0.95815 0.94832 0.85951 1.42530 1.59744 1.20894 1.15426 1.19674 1.21333 0.99251 0.97273 0.90265 1.25551 1.03192 0.98691 0.99059 1.69846 1.51310 1.22262 1.18523 0.85073 0.77887 0.78437 0.78322 1.18875 1.21945 1.22462 1.22623 1.06391 0.98366 0.91253 1.22946 0.95711 1.02319 0.98784 1.23265 0.94112 1.01989 1.03242 1.23668 0.98706 0.95093 0.91019 1.22245 0.93630 0.97444 1.01624 1.22682 0.96130 0.97059 1.00373 1.22335 0.99211 0.88878 1.02715 0.89526 0.90104 0.92559 0.75634 0.94487 0.94232 0.79449 0.94113 0.85710 0.89548 0.87100 0.87957 0.89032 0.91987 0.88997 0.88551 0.89294 0.87186 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.50 9.57 71.23 0.68 -1.82 16 2 C -0.18 -5.38 6.00 -18.70 -0.11 -5.50 16 3 C 0.55 19.55 6.59 86.57 0.57 20.12 16 4 O -0.57 -23.21 12.18 -4.07 -0.05 -23.26 16 5 N -0.70 -23.98 3.00 -446.13 -1.34 -25.31 16 6 C 0.18 6.32 2.59 44.99 0.12 6.44 16 7 H 0.06 2.43 7.58 -2.39 -0.02 2.42 16 8 C 0.15 5.95 5.80 86.38 0.50 6.45 16 9 N -0.74 -37.54 5.43 -343.47 -1.87 -39.41 16 10 C -0.24 -13.43 9.99 84.03 0.84 -12.59 16 11 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 12 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 13 N -0.97 -59.47 13.06 21.65 0.28 -59.19 16 14 Si 0.97 45.86 29.55 68.60 2.03 47.89 16 15 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 16 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 17 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 18 C -0.17 -4.79 5.70 -10.79 -0.06 -4.85 16 19 C -0.16 -4.04 9.74 30.62 0.30 -3.74 16 20 C -0.19 -5.34 9.83 30.62 0.30 -5.04 16 21 C -0.08 -2.15 6.60 -17.17 -0.11 -2.27 16 22 C -0.11 -2.78 6.99 30.06 0.21 -2.57 16 23 C -0.13 -2.06 8.17 30.95 0.25 -1.81 16 24 C -0.09 -1.64 7.72 30.17 0.23 -1.41 16 25 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.08 1.71 7.91 -2.39 -0.02 1.69 16 27 H 0.06 1.55 6.70 -2.39 -0.02 1.53 16 28 H 0.41 13.38 6.70 -92.71 -0.62 12.75 16 29 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.37 20.61 7.33 -92.70 -0.68 19.93 16 32 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 33 H 0.13 3.16 8.11 -2.39 -0.02 3.15 16 34 H 0.09 2.29 6.67 -2.39 -0.02 2.27 16 35 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.09 3.14 5.01 -2.39 -0.01 3.12 16 38 H 0.06 1.79 7.49 -2.39 -0.02 1.77 16 39 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 40 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.11 1.70 8.14 -2.39 -0.02 1.69 16 43 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -67.94 346.38 2.95 -64.99 By element: Atomic # 1 Polarization: 46.85 SS G_CDS: -0.29 Total: 46.57 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 4.18 Total: -12.26 kcal Atomic # 7 Polarization: -121.00 SS G_CDS: -2.92 Total: -123.92 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.05 Total: -23.26 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -67.94 2.95 -64.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569303419.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.554 kcal (2) G-P(sol) polarization free energy of solvation -67.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds