Wall clock time and date at job start Tue Mar 31 2020 00:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 120.00724 * 2 1 4 4 C 1.53006 * 109.47346 * 124.99786 * 3 2 1 5 5 C 1.50695 * 112.84777 * 296.18063 * 4 3 2 6 6 O 1.21287 * 119.99843 * 111.96124 * 5 4 3 7 7 N 1.34777 * 119.99942 * 291.95064 * 5 4 3 8 8 C 1.46508 * 120.00016 * 174.90194 * 7 5 4 9 9 C 1.52997 * 109.47090 * 180.02562 * 8 7 5 10 10 H 1.08998 * 112.78037 * 303.72247 * 9 8 7 11 11 C 1.53499 * 113.46516 * 172.93965 * 9 8 7 12 12 C 1.53759 * 83.25518 * 218.98264 * 11 9 8 13 13 N 1.47063 * 87.88682 * 26.24329 * 12 11 9 14 14 C 1.36938 * 136.05857 * 152.96625 * 13 12 11 15 15 H 1.07996 * 120.00309 * 184.97570 * 14 13 12 16 16 C 1.38816 * 120.00029 * 4.97293 * 14 13 12 17 17 N 1.31625 * 119.99443 * 354.93124 * 16 14 13 18 18 Si 1.86794 * 120.00170 * 174.92985 * 16 14 13 19 19 H 1.48502 * 109.47331 * 275.05308 * 18 16 14 20 20 H 1.48497 * 109.47135 * 35.05319 * 18 16 14 21 21 H 1.48502 * 109.47239 * 155.05622 * 18 16 14 22 22 C 1.53786 * 113.68446 * 67.44482 * 4 3 2 23 23 C 1.53780 * 87.08094 * 89.12757 * 22 4 3 24 24 C 1.53772 * 113.61397 * 164.97805 * 4 3 2 25 25 H 1.08002 * 119.99784 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00408 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.99784 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46438 * 5.00285 * 3 2 1 29 29 H 1.08990 * 109.47518 * 245.00690 * 3 2 1 30 30 H 0.97000 * 120.00003 * 354.90630 * 7 5 4 31 31 H 1.08997 * 109.46866 * 60.00263 * 8 7 5 32 32 H 1.09005 * 109.46797 * 300.00432 * 8 7 5 33 33 H 1.08993 * 114.20763 * 332.74132 * 11 9 8 34 34 H 1.09001 * 114.20327 * 105.37230 * 11 9 8 35 35 H 1.08996 * 113.46675 * 271.50064 * 12 11 9 36 36 H 1.09006 * 113.54759 * 140.98511 * 12 11 9 37 37 H 0.97008 * 119.99522 * 180.02562 * 17 16 14 38 38 H 1.08998 * 113.60661 * 203.67586 * 22 4 3 39 39 H 1.09000 * 113.61812 * 334.58031 * 22 4 3 40 40 H 1.08997 * 113.61482 * 270.88540 * 23 22 4 41 41 H 1.08996 * 113.61492 * 139.97393 * 23 22 4 42 42 H 1.09003 * 113.61633 * 25.35480 * 24 4 3 43 43 H 1.09002 * 113.61544 * 156.25511 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0352 1.3329 1.1817 5 6 2.3352 1.2954 2.5157 6 8 2.4386 0.3187 3.2274 7 7 1.5946 2.3471 2.9179 8 6 0.8243 2.2677 4.1616 9 6 0.0782 3.5847 4.3844 10 1 0.7422 4.4490 4.3969 11 6 -0.8938 3.5433 5.5717 12 6 -1.7855 4.3775 4.6372 13 7 -1.0870 3.7539 3.5032 14 6 -1.3873 3.4641 2.1990 15 1 -0.6841 2.9125 1.5927 16 6 -2.5955 3.8793 1.6561 17 7 -3.4942 4.4633 2.4202 18 14 -2.9460 3.6093 -0.1587 19 1 -2.3693 4.7285 -0.9462 20 1 -2.3334 2.3292 -0.5960 21 1 -4.4139 3.5556 -0.3767 22 6 4.1848 0.3187 1.0604 23 6 4.9694 1.4152 0.3209 24 6 4.1017 2.4357 1.0763 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6213 1.4025 -0.9313 30 1 1.5715 3.1566 2.3840 31 1 1.5007 2.0871 4.9970 32 1 0.1060 1.4507 4.0925 33 1 -1.2824 2.5502 5.7967 34 1 -0.5445 4.0795 6.4541 35 1 -1.6129 5.4508 4.7164 36 1 -2.8419 4.1146 4.6940 37 1 -4.3387 4.7531 2.0409 38 1 4.6229 0.0389 2.0184 39 1 3.9438 -0.5420 0.4364 40 1 4.8069 1.4170 -0.7569 41 1 6.0246 1.4547 0.5910 42 1 3.7936 3.2841 0.4653 43 1 4.5172 2.7346 2.0387 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569374228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:57 Heat of formation + Delta-G solvation = 51.877188 kcal Electronic energy + Delta-G solvation = -22812.388183 eV Core-core repulsion = 19667.426588 eV Total energy + Delta-G solvation = -3144.961594 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.49831 -38.44145 -37.32708 -34.15065 -33.87825 -32.22675 -28.88121 -27.99145 -27.26667 -25.66901 -24.51534 -23.48231 -21.98428 -20.61200 -19.80160 -19.31749 -18.34331 -17.20941 -16.48423 -15.64355 -15.53490 -15.19697 -14.69520 -14.35775 -14.23608 -13.74847 -13.65457 -13.28983 -13.09505 -12.59541 -12.36458 -11.91051 -11.85254 -11.73349 -11.54718 -11.13693 -11.08495 -11.02835 -10.94946 -10.74813 -10.57589 -10.46870 -10.22187 -9.95090 -9.85630 -9.45336 -9.15199 -8.94252 -8.83761 -8.46861 -6.90543 -5.79990 -3.11384 2.55630 3.04176 3.34328 3.38193 3.42121 3.67168 4.40541 4.41849 4.53450 4.74329 4.76397 5.11825 5.24126 5.31015 5.37346 5.42686 5.50142 5.56418 5.57256 5.71198 5.74330 5.82647 5.83701 5.92258 5.94265 6.08181 6.13357 6.19465 6.23744 6.33313 6.37217 6.41209 6.59882 6.74256 6.91919 6.97848 7.03164 7.22905 7.37498 7.56588 7.94960 8.01850 8.68189 9.00723 9.67974 10.62215 11.37744 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015487 B = 0.006787 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.509430 B = 4124.666369 C = 5264.683171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.164 4.164 3 C -0.064 4.064 4 C -0.099 4.099 5 C 0.529 3.471 6 O -0.552 6.552 7 N -0.712 5.712 8 C 0.122 3.878 9 C 0.127 3.873 10 H 0.047 0.953 11 C -0.162 4.162 12 C 0.153 3.847 13 N -0.600 5.600 14 C -0.212 4.212 15 H 0.081 0.919 16 C -0.006 4.006 17 N -0.917 5.917 18 Si 0.901 3.099 19 H -0.289 1.289 20 H -0.277 1.277 21 H -0.291 1.291 22 C -0.111 4.111 23 C -0.140 4.140 24 C -0.128 4.128 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.402 0.598 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.025 0.975 36 H 0.069 0.931 37 H 0.253 0.747 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.326 -3.691 -2.317 14.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.182 4.182 3 C -0.102 4.102 4 C -0.102 4.102 5 C 0.315 3.685 6 O -0.430 6.430 7 N -0.361 5.361 8 C -0.002 4.002 9 C 0.019 3.981 10 H 0.064 0.936 11 C -0.201 4.201 12 C 0.028 3.972 13 N -0.326 5.326 14 C -0.339 4.339 15 H 0.099 0.901 16 C -0.203 4.203 17 N -0.564 5.564 18 Si 0.732 3.268 19 H -0.216 1.216 20 H -0.203 1.203 21 H -0.217 1.217 22 C -0.149 4.149 23 C -0.178 4.178 24 C -0.166 4.166 25 H 0.123 0.877 26 H 0.112 0.888 27 H 0.123 0.877 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.236 0.764 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.138 -4.399 -2.109 14.014 hybrid contribution -0.416 0.412 -1.247 1.378 sum 12.722 -3.987 -3.356 13.748 Atomic orbital electron populations 1.24024 0.95982 1.02481 0.98844 1.22701 0.95839 0.97794 1.01908 1.20488 0.97047 0.96805 0.95823 1.22082 0.94783 0.99730 0.93648 1.20228 0.78516 0.82618 0.87161 1.90632 1.62994 1.33361 1.56062 1.45934 1.47182 1.17184 1.25794 1.21761 0.93646 0.99753 0.85074 1.22404 0.90915 0.93757 0.90990 0.93572 1.23716 0.99316 1.01438 0.95637 1.22036 0.97863 0.93752 0.83568 1.45665 1.09622 1.69006 1.08312 1.18835 1.01334 1.29018 0.84722 0.90124 1.24786 0.96915 1.00858 0.97761 1.69841 1.07375 1.45223 1.33915 0.86314 0.77420 0.77874 0.85237 1.21610 1.20293 1.21704 1.22809 0.94464 0.96391 1.01193 1.22832 0.98797 0.96546 0.99605 1.22978 0.95785 0.96526 1.01307 0.87749 0.88778 0.87674 0.90316 0.90202 0.76406 0.92507 0.91379 0.90267 0.92426 0.95676 0.91225 0.93678 0.89381 0.91009 0.89947 0.91281 0.90520 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 14.32 29.02 0.42 -2.46 16 2 C -0.16 -2.42 8.69 -36.03 -0.31 -2.73 16 3 C -0.06 -0.86 5.03 -27.88 -0.14 -1.00 16 4 C -0.10 -1.33 0.78 -154.85 -0.12 -1.45 16 5 C 0.53 9.10 6.25 -10.99 -0.07 9.03 16 6 O -0.55 -11.31 16.22 5.55 0.09 -11.22 16 7 N -0.71 -12.28 5.32 -60.29 -0.32 -12.60 16 8 C 0.12 2.26 5.53 -4.04 -0.02 2.23 16 9 C 0.13 2.45 4.10 -72.40 -0.30 2.15 16 10 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 11 C -0.16 -2.96 8.04 -26.08 -0.21 -3.17 16 12 C 0.15 3.49 7.35 -8.37 -0.06 3.43 16 13 N -0.60 -14.41 3.65 -176.84 -0.64 -15.06 16 14 C -0.21 -5.53 10.54 -15.06 -0.16 -5.69 16 15 H 0.08 2.01 7.60 -52.49 -0.40 1.61 16 16 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 17 N -0.92 -26.63 11.59 55.49 0.64 -25.99 16 18 Si 0.90 21.38 29.56 -169.99 -5.02 16.36 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.28 6.91 56.52 0.39 -5.89 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 C -0.11 -1.33 6.73 -25.92 -0.17 -1.51 16 23 C -0.14 -1.34 7.73 -25.92 -0.20 -1.54 16 24 C -0.13 -1.40 7.22 -25.92 -0.19 -1.59 16 25 H 0.10 1.92 7.65 -52.49 -0.40 1.52 16 26 H 0.09 1.41 8.06 -52.49 -0.42 0.98 16 27 H 0.11 1.43 7.38 -52.49 -0.39 1.04 16 28 H 0.08 1.16 7.79 -51.93 -0.40 0.76 16 29 H 0.08 0.89 7.31 -51.93 -0.38 0.51 16 30 H 0.40 6.68 8.48 -40.82 -0.35 6.33 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 33 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 1.77 7.25 -51.93 -0.38 1.39 16 37 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 38 H 0.09 1.16 7.76 -51.93 -0.40 0.75 16 39 H 0.07 0.82 7.21 -51.93 -0.37 0.45 16 40 H 0.08 0.70 7.60 -51.93 -0.39 0.31 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 43 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -30.74 350.85 -8.84 -39.58 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.23 Total: 8.21 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -1.63 Total: -4.57 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.32 Total: -53.65 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.74 -8.84 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569374228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.458 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds