Wall clock time and date at job start Tue Mar 31 2020 00:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 120.00724 * 2 1 4 4 C 1.53006 * 109.47346 * 124.99786 * 3 2 1 5 5 C 1.50695 * 112.84777 * 296.18063 * 4 3 2 6 6 O 1.21287 * 119.99843 * 111.96124 * 5 4 3 7 7 N 1.34777 * 119.99942 * 291.95064 * 5 4 3 8 8 C 1.46508 * 120.00016 * 174.90194 * 7 5 4 9 9 C 1.52997 * 109.47090 * 180.02562 * 8 7 5 10 10 H 1.08998 * 112.78037 * 303.72247 * 9 8 7 11 11 C 1.53499 * 113.46516 * 172.93965 * 9 8 7 12 12 C 1.53759 * 83.25518 * 218.98264 * 11 9 8 13 13 N 1.47063 * 87.88682 * 26.24329 * 12 11 9 14 14 C 1.36938 * 136.05857 * 152.96625 * 13 12 11 15 15 H 1.07996 * 120.00309 * 184.97570 * 14 13 12 16 16 C 1.38816 * 120.00029 * 4.97293 * 14 13 12 17 17 N 1.31625 * 119.99443 * 354.93124 * 16 14 13 18 18 Si 1.86794 * 120.00170 * 174.92985 * 16 14 13 19 19 H 1.48502 * 109.47331 * 275.05308 * 18 16 14 20 20 H 1.48497 * 109.47135 * 35.05319 * 18 16 14 21 21 H 1.48502 * 109.47239 * 155.05622 * 18 16 14 22 22 C 1.53786 * 113.68446 * 67.44482 * 4 3 2 23 23 C 1.53780 * 87.08094 * 89.12757 * 22 4 3 24 24 C 1.53772 * 113.61397 * 164.97805 * 4 3 2 25 25 H 1.08002 * 119.99784 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00408 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.99784 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46438 * 5.00285 * 3 2 1 29 29 H 1.08990 * 109.47518 * 245.00690 * 3 2 1 30 30 H 0.97000 * 120.00003 * 354.90630 * 7 5 4 31 31 H 1.08997 * 109.46866 * 60.00263 * 8 7 5 32 32 H 1.09005 * 109.46797 * 300.00432 * 8 7 5 33 33 H 1.08993 * 114.20763 * 332.74132 * 11 9 8 34 34 H 1.09001 * 114.20327 * 105.37230 * 11 9 8 35 35 H 1.08996 * 113.46675 * 271.50064 * 12 11 9 36 36 H 1.09006 * 113.54759 * 140.98511 * 12 11 9 37 37 H 0.97008 * 119.99522 * 180.02562 * 17 16 14 38 38 H 1.08998 * 113.60661 * 203.67586 * 22 4 3 39 39 H 1.09000 * 113.61812 * 334.58031 * 22 4 3 40 40 H 1.08997 * 113.61482 * 270.88540 * 23 22 4 41 41 H 1.08996 * 113.61492 * 139.97393 * 23 22 4 42 42 H 1.09003 * 113.61633 * 25.35480 * 24 4 3 43 43 H 1.09002 * 113.61544 * 156.25511 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0352 1.3329 1.1817 5 6 2.3352 1.2954 2.5157 6 8 2.4386 0.3187 3.2274 7 7 1.5946 2.3471 2.9179 8 6 0.8243 2.2677 4.1616 9 6 0.0782 3.5847 4.3844 10 1 0.7422 4.4490 4.3969 11 6 -0.8938 3.5433 5.5717 12 6 -1.7855 4.3775 4.6372 13 7 -1.0870 3.7539 3.5032 14 6 -1.3873 3.4641 2.1990 15 1 -0.6841 2.9125 1.5927 16 6 -2.5955 3.8793 1.6561 17 7 -3.4942 4.4633 2.4202 18 14 -2.9460 3.6093 -0.1587 19 1 -2.3693 4.7285 -0.9462 20 1 -2.3334 2.3292 -0.5960 21 1 -4.4139 3.5556 -0.3767 22 6 4.1848 0.3187 1.0604 23 6 4.9694 1.4152 0.3209 24 6 4.1017 2.4357 1.0763 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6213 1.4025 -0.9313 30 1 1.5715 3.1566 2.3840 31 1 1.5007 2.0871 4.9970 32 1 0.1060 1.4507 4.0925 33 1 -1.2824 2.5502 5.7967 34 1 -0.5445 4.0795 6.4541 35 1 -1.6129 5.4508 4.7164 36 1 -2.8419 4.1146 4.6940 37 1 -4.3387 4.7531 2.0409 38 1 4.6229 0.0389 2.0184 39 1 3.9438 -0.5420 0.4364 40 1 4.8069 1.4170 -0.7569 41 1 6.0246 1.4547 0.5910 42 1 3.7936 3.2841 0.4653 43 1 4.5172 2.7346 2.0387 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569374228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:57 Heat of formation + Delta-G solvation = 33.191673 kcal Electronic energy + Delta-G solvation = -22813.198447 eV Core-core repulsion = 19667.426588 eV Total energy + Delta-G solvation = -3145.771859 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.66746 -40.03870 -38.65356 -35.48799 -35.18156 -34.21776 -30.21850 -29.82882 -28.63317 -26.57297 -25.66869 -25.38177 -23.50550 -21.87480 -21.07023 -20.93063 -19.59007 -18.62924 -18.01470 -17.11213 -17.04557 -16.54617 -16.07587 -15.94843 -15.50578 -15.28616 -14.89272 -14.78491 -14.63444 -13.92110 -13.55755 -13.33393 -13.25922 -12.99008 -12.93904 -12.81107 -12.63373 -12.57460 -12.32822 -12.07270 -12.05549 -11.80104 -11.64262 -11.44451 -11.17529 -11.07623 -10.83730 -10.49959 -10.20755 -9.94892 -8.87308 -7.87009 -5.17592 1.33363 1.43945 1.44946 1.52215 1.69762 2.32829 2.48746 3.34315 3.41401 3.45180 3.57923 3.79690 3.89541 3.92191 4.03305 4.14894 4.18660 4.30885 4.33683 4.59464 4.62255 4.65363 4.70488 4.81286 4.87657 4.89903 4.95507 4.97062 5.04806 5.09803 5.11351 5.16520 5.25952 5.34602 5.48763 5.54019 5.59872 5.70959 5.73014 5.82773 5.97177 6.64300 6.95028 7.31411 7.65799 8.65805 9.31315 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015487 B = 0.006787 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.509430 B = 4124.666369 C = 5264.683171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.064 4.064 4 C -0.104 4.104 5 C 0.524 3.476 6 O -0.589 6.589 7 N -0.711 5.711 8 C 0.132 3.868 9 C 0.134 3.866 10 H 0.068 0.932 11 C -0.136 4.136 12 C 0.145 3.855 13 N -0.627 5.627 14 C -0.201 4.201 15 H 0.088 0.912 16 C -0.069 4.069 17 N -0.954 5.954 18 Si 0.958 3.042 19 H -0.284 1.284 20 H -0.263 1.263 21 H -0.303 1.303 22 C -0.114 4.114 23 C -0.123 4.123 24 C -0.124 4.124 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.120 0.880 28 H 0.062 0.938 29 H 0.113 0.887 30 H 0.406 0.594 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.023 0.977 36 H 0.033 0.967 37 H 0.244 0.756 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.198 -3.765 -3.128 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.169 4.169 3 C -0.101 4.101 4 C -0.107 4.107 5 C 0.312 3.688 6 O -0.470 6.470 7 N -0.360 5.360 8 C 0.007 3.993 9 C 0.028 3.972 10 H 0.085 0.915 11 C -0.175 4.175 12 C 0.020 3.980 13 N -0.353 5.353 14 C -0.329 4.329 15 H 0.106 0.894 16 C -0.262 4.262 17 N -0.604 5.604 18 Si 0.787 3.213 19 H -0.211 1.211 20 H -0.188 1.188 21 H -0.231 1.231 22 C -0.152 4.152 23 C -0.160 4.160 24 C -0.161 4.161 25 H 0.097 0.903 26 H 0.119 0.881 27 H 0.138 0.862 28 H 0.081 0.919 29 H 0.131 0.869 30 H 0.241 0.759 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.055 -4.471 -2.919 16.920 hybrid contribution -1.246 0.400 -0.904 1.590 sum 14.810 -4.071 -3.824 15.828 Atomic orbital electron populations 1.23951 0.96773 1.01674 1.01702 1.22981 0.95419 0.99186 0.99301 1.20546 0.96940 0.95346 0.97279 1.22193 0.95053 1.02351 0.91073 1.20977 0.77900 0.81657 0.88241 1.90611 1.64266 1.34562 1.57530 1.45948 1.46920 1.17621 1.25484 1.21534 0.93388 0.98040 0.86388 1.22530 0.90226 0.94579 0.89898 0.91477 1.23540 0.96954 1.00795 0.96205 1.22045 0.96658 0.94272 0.85066 1.45978 1.12110 1.69055 1.08154 1.19178 1.00842 1.27191 0.85724 0.89412 1.25507 0.97300 1.02035 1.01326 1.70025 1.07599 1.47561 1.35229 0.85395 0.76324 0.78403 0.81185 1.21089 1.18796 1.23054 1.22835 0.94140 0.97099 1.01114 1.22805 0.99167 0.93862 1.00171 1.23010 0.94705 0.96569 1.01857 0.90277 0.88107 0.86209 0.91906 0.86909 0.75941 0.90815 0.94519 0.90436 0.88319 0.95895 0.94842 0.94689 0.90862 0.90442 0.88104 0.89728 0.89192 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.59 14.32 67.78 0.97 -5.62 16 2 C -0.15 -4.21 8.69 25.65 0.22 -3.98 16 3 C -0.06 -1.56 5.03 29.85 0.15 -1.41 16 4 C -0.10 -2.54 0.78 -52.40 -0.04 -2.58 16 5 C 0.52 17.43 6.25 87.66 0.55 17.97 16 6 O -0.59 -23.79 16.22 -3.05 -0.05 -23.84 16 7 N -0.71 -23.70 5.32 -463.05 -2.47 -26.17 16 8 C 0.13 4.72 5.53 86.38 0.48 5.19 16 9 C 0.13 4.95 4.10 41.79 0.17 5.12 16 10 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 11 C -0.14 -4.74 8.04 31.02 0.25 -4.49 16 12 C 0.15 6.66 7.35 83.27 0.61 7.27 16 13 N -0.63 -30.13 3.65 -713.40 -2.60 -32.73 16 14 C -0.20 -10.60 10.54 84.03 0.89 -9.71 16 15 H 0.09 4.39 7.60 -2.91 -0.02 4.37 16 16 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 17 N -0.95 -57.35 11.59 21.65 0.25 -57.10 16 18 Si 0.96 44.90 29.56 68.60 2.03 46.92 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.26 -11.56 6.91 99.48 0.69 -10.87 16 21 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 22 C -0.11 -2.43 6.73 31.12 0.21 -2.22 16 23 C -0.12 -1.84 7.73 31.12 0.24 -1.60 16 24 C -0.12 -2.29 7.22 31.12 0.22 -2.06 16 25 H 0.08 2.95 7.65 -2.91 -0.02 2.92 16 26 H 0.10 3.02 8.06 -2.91 -0.02 2.99 16 27 H 0.12 2.99 7.38 -2.91 -0.02 2.97 16 28 H 0.06 1.75 7.79 -2.38 -0.02 1.74 16 29 H 0.11 2.05 7.31 -2.39 -0.02 2.04 16 30 H 0.41 12.90 8.48 -92.71 -0.79 12.12 16 31 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.08 2.74 8.12 -2.39 -0.02 2.72 16 34 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.03 1.76 7.25 -2.38 -0.02 1.74 16 37 H 0.24 14.45 8.31 -92.70 -0.77 13.68 16 38 H 0.07 1.79 7.76 -2.39 -0.02 1.78 16 39 H 0.08 1.54 7.21 -2.39 -0.02 1.53 16 40 H 0.10 1.19 7.60 -2.39 -0.02 1.17 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.09 1.45 8.10 -2.39 -0.02 1.43 16 43 H 0.08 1.58 8.09 -2.39 -0.02 1.56 16 Total: -1.00 -68.59 350.85 2.72 -65.86 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.17 Total: 28.55 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 5.39 Total: -1.50 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -4.82 Total: -116.00 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.05 Total: -23.84 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -68.59 2.72 -65.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569374228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.055 kcal (2) G-P(sol) polarization free energy of solvation -68.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds