Wall clock time and date at job start Tue Mar 31 2020 00:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.47194 * 109.47252 * 120.00153 * 2 1 3 5 5 C 2.64592 * 109.47260 * 120.00175 * 2 1 3 6 6 C 4.07799 * 109.47270 * 120.00145 * 2 1 3 7 7 O 1.21614 * 119.99929 * 100.43458 * 6 5 4 8 8 N 1.34776 * 119.99913 * 280.43017 * 6 5 4 9 9 C 1.46497 * 119.99926 * 180.02562 * 8 6 5 10 10 H 1.09003 * 110.88933 * 37.42322 * 9 8 6 11 11 C 1.54911 * 111.00123 * 273.54548 * 9 8 6 12 12 N 1.47425 * 104.83100 * 278.93487 * 11 9 8 13 13 C 1.36935 * 125.64999 * 155.83724 * 12 11 9 14 14 H 1.07995 * 120.00231 * 180.02562 * 13 12 11 15 15 C 1.38814 * 119.99950 * 0.02562 * 13 12 11 16 16 N 1.31617 * 119.99970 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00200 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47172 * 89.99815 * 17 15 13 19 19 H 1.48496 * 109.47510 * 210.00129 * 17 15 13 20 20 H 1.48508 * 109.47115 * 330.00084 * 17 15 13 21 21 C 1.47023 * 108.70303 * 335.87111 * 12 11 9 22 22 C 1.54322 * 107.27141 * 1.05937 * 21 12 11 23 23 C 1.53001 * 110.72133 * 263.82918 * 22 21 12 24 24 C 1.53002 * 110.72037 * 140.55503 * 22 21 12 25 25 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 28 28 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 29 29 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 31 31 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 32 32 H 0.96999 * 119.99721 * 359.97438 * 8 6 5 33 33 H 1.09001 * 110.36704 * 37.77533 * 11 9 8 34 34 H 1.09000 * 110.36657 * 159.98540 * 11 9 8 35 35 H 0.96999 * 120.00562 * 180.02562 * 16 15 13 36 36 H 1.08995 * 109.88403 * 120.47835 * 21 12 11 37 37 H 1.09001 * 109.88446 * 241.64342 * 21 12 11 38 38 H 1.09007 * 109.46951 * 173.52087 * 23 22 21 39 39 H 1.08994 * 109.46898 * 293.52198 * 23 22 21 40 40 H 1.08999 * 109.46997 * 53.52083 * 23 22 21 41 41 H 1.08993 * 109.47017 * 306.47434 * 24 22 21 42 42 H 1.08994 * 109.47178 * 66.47970 * 24 22 21 43 43 H 1.08997 * 109.46992 * 186.47886 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0207 -0.6939 1.2018 5 6 2.4121 -1.2474 2.1603 6 6 2.8895 -1.9224 3.3296 7 8 3.7362 -2.7895 3.2280 8 7 2.4005 -1.5969 4.5426 9 6 2.8892 -2.2871 5.7387 10 1 3.9575 -2.4895 5.6614 11 6 2.0937 -3.5922 5.9907 12 7 0.8553 -3.1558 6.6610 13 6 -0.3319 -3.8383 6.6674 14 1 -1.1854 -3.4323 7.1898 15 6 -0.4382 -5.0522 6.0024 16 7 0.6019 -5.5468 5.3653 17 14 -2.0578 -5.9828 6.0105 18 1 -2.8790 -5.5574 4.8487 19 1 -1.7913 -7.4410 5.9209 20 1 -2.7907 -5.6900 7.2685 21 6 1.1057 -1.8661 7.3209 22 6 2.5677 -1.4740 7.0205 23 6 3.4871 -1.8902 8.1704 24 6 2.6810 0.0279 6.7513 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.7254 -0.9050 4.6235 33 1 1.8608 -4.0830 5.0457 34 1 2.6603 -4.2632 6.6362 35 1 0.5275 -6.3948 4.9003 36 1 0.4297 -1.1090 6.9237 37 1 0.9624 -1.9661 8.3968 38 1 4.5248 -1.7093 7.8897 39 1 3.2442 -1.3075 9.0589 40 1 3.3474 -2.9503 8.3818 41 1 1.9769 0.3109 5.9689 42 1 2.4515 0.5788 7.6633 43 1 3.6954 0.2639 6.4298 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570895799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:44 Heat of formation + Delta-G solvation = 28.435771 kcal Electronic energy + Delta-G solvation = -22142.439654 eV Core-core repulsion = 18996.461563 eV Total energy + Delta-G solvation = -3145.978090 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.67184 -37.84695 -36.40531 -33.82435 -33.05106 -31.70187 -30.68723 -28.18656 -27.39088 -26.88394 -25.60916 -24.30464 -22.96397 -21.40939 -20.03714 -19.06025 -17.89085 -16.70573 -16.05797 -15.90412 -14.90389 -14.74903 -14.44555 -14.09494 -13.85466 -13.75283 -13.54752 -13.17030 -12.71699 -12.45471 -12.19904 -12.15335 -11.93104 -11.77012 -11.61220 -11.55869 -11.30396 -11.16707 -11.01360 -10.76302 -10.46871 -10.26511 -10.18760 -10.14443 -9.91279 -9.80651 -9.70303 -9.67259 -8.66916 -8.38202 -6.79600 -5.60778 -3.04123 1.90936 2.52734 3.41082 3.45747 3.47430 3.48582 3.92887 4.39454 4.50456 4.78008 4.94734 4.96459 5.05207 5.23820 5.28895 5.39686 5.46368 5.54011 5.58934 5.63161 5.68148 5.78923 5.84172 5.88387 5.98325 6.03035 6.05277 6.10678 6.18734 6.26311 6.40573 6.49851 6.60824 6.69999 6.73633 6.97308 7.43109 7.50046 7.63926 7.87859 8.00148 8.41388 8.63685 9.23972 9.85625 10.49585 11.41936 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012219 B = 0.005852 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.014920 B = 4783.413726 C = 6156.284400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.012 3.988 3 C -0.144 4.144 4 C -0.099 4.099 5 C -0.203 4.203 6 C 0.628 3.372 7 O -0.527 6.527 8 N -0.688 5.688 9 C 0.124 3.876 10 H 0.088 0.912 11 C 0.145 3.855 12 N -0.601 5.601 13 C -0.226 4.226 14 H 0.077 0.923 15 C -0.009 4.009 16 N -0.917 5.917 17 Si 0.912 3.088 18 H -0.290 1.290 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.143 3.857 22 C -0.087 4.087 23 C -0.128 4.128 24 C -0.132 4.132 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.399 0.601 33 H 0.114 0.886 34 H 0.023 0.977 35 H 0.253 0.747 36 H 0.021 0.979 37 H 0.024 0.976 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.112 14.811 -5.400 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.006 4.006 3 C -0.202 4.202 4 C -0.102 4.102 5 C -0.206 4.206 6 C 0.414 3.586 7 O -0.405 6.405 8 N -0.337 5.337 9 C 0.019 3.981 10 H 0.106 0.894 11 C 0.020 3.980 12 N -0.327 5.327 13 C -0.354 4.354 14 H 0.094 0.906 15 C -0.205 4.205 16 N -0.565 5.565 17 Si 0.743 3.257 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.208 1.208 21 C 0.017 3.983 22 C -0.088 4.088 23 C -0.186 4.186 24 C -0.190 4.190 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.234 0.766 33 H 0.132 0.868 34 H 0.041 0.959 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.624 13.966 -5.493 15.439 hybrid contribution -1.229 -0.295 0.102 1.268 sum 2.395 13.671 -5.391 14.889 Atomic orbital electron populations 1.21847 0.92877 1.03057 1.02609 1.18420 0.96179 0.94958 0.91030 1.21830 1.01611 0.94087 1.02644 1.22485 0.96266 0.95939 0.95489 1.21015 1.02185 1.00688 0.96719 1.14643 0.81586 0.81578 0.80767 1.90837 1.32490 1.31126 1.86033 1.45663 1.42379 1.40190 1.05516 1.22599 0.98770 0.95026 0.81748 0.89387 1.22322 0.85069 0.90083 1.00556 1.44456 1.09029 1.19473 1.59751 1.19022 0.87824 1.00696 1.27876 0.90561 1.24795 0.97592 0.97745 1.00329 1.69798 1.27990 1.20337 1.38346 0.86114 0.82787 0.79229 0.77590 1.21712 1.21652 1.20766 1.21412 0.91602 0.89311 0.95972 1.21846 0.97218 0.94595 0.95140 1.21684 0.97983 1.02292 0.96597 1.21729 1.01275 0.94859 1.01095 0.91435 0.91799 0.91900 0.88510 0.92102 0.91401 0.91992 0.76616 0.86837 0.95930 0.93644 0.96094 0.95764 0.93000 0.92638 0.91667 0.92962 0.92594 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.15 37.16 0.34 -1.01 16 2 C 0.01 0.12 3.30 -93.41 -0.31 -0.19 16 3 C -0.14 -1.15 9.15 37.16 0.34 -0.81 16 4 C -0.10 -1.45 12.56 -37.13 -0.47 -1.92 16 5 C -0.20 -3.59 13.61 -38.83 -0.53 -4.12 16 6 C 0.63 12.77 7.65 -14.33 -0.11 12.66 16 7 O -0.53 -12.53 16.83 5.27 0.09 -12.44 16 8 N -0.69 -12.88 4.68 -54.16 -0.25 -13.14 16 9 C 0.12 2.44 2.56 -65.78 -0.17 2.27 16 10 H 0.09 1.74 7.63 -51.93 -0.40 1.34 16 11 C 0.15 3.62 5.27 -2.53 -0.01 3.61 16 12 N -0.60 -15.17 3.39 -170.07 -0.58 -15.74 16 13 C -0.23 -6.29 10.27 -15.06 -0.15 -6.44 16 14 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 15 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 16 N -0.92 -27.55 10.09 55.49 0.56 -26.99 16 17 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.14 2.88 6.41 -3.06 -0.02 2.86 16 22 C -0.09 -1.45 0.81 -152.67 -0.12 -1.57 16 23 C -0.13 -1.92 8.41 37.16 0.31 -1.61 16 24 C -0.13 -1.75 8.07 37.16 0.30 -1.45 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.40 6.71 6.85 -40.82 -0.28 6.43 16 33 H 0.11 3.32 5.87 -51.93 -0.30 3.02 16 34 H 0.02 0.60 7.81 -51.93 -0.41 0.20 16 35 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 36 H 0.02 0.41 7.76 -51.93 -0.40 0.01 16 37 H 0.02 0.49 7.84 -51.93 -0.41 0.09 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.11 7.58 -51.93 -0.39 0.72 16 41 H 0.05 0.67 6.35 -51.93 -0.33 0.34 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 351.96 15.07 5.30 5.30 Total: -1.00 -32.85 351.96 -7.71 -40.56 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.12 Total: 3.12 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -0.69 Total: 1.94 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.27 Total: -55.88 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.85 -7.71 -40.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570895799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.997 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds