Wall clock time and date at job start Tue Mar 31 2020 00:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.47194 * 109.47252 * 120.00153 * 2 1 3 5 5 C 2.64592 * 109.47260 * 120.00175 * 2 1 3 6 6 C 4.07799 * 109.47270 * 120.00145 * 2 1 3 7 7 O 1.21614 * 119.99929 * 100.43458 * 6 5 4 8 8 N 1.34776 * 119.99913 * 280.43017 * 6 5 4 9 9 C 1.46497 * 119.99926 * 180.02562 * 8 6 5 10 10 H 1.09003 * 110.88933 * 37.42322 * 9 8 6 11 11 C 1.54911 * 111.00123 * 273.54548 * 9 8 6 12 12 N 1.47425 * 104.83100 * 278.93487 * 11 9 8 13 13 C 1.36935 * 125.64999 * 155.83724 * 12 11 9 14 14 H 1.07995 * 120.00231 * 180.02562 * 13 12 11 15 15 C 1.38814 * 119.99950 * 0.02562 * 13 12 11 16 16 N 1.31617 * 119.99970 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00200 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47172 * 89.99815 * 17 15 13 19 19 H 1.48496 * 109.47510 * 210.00129 * 17 15 13 20 20 H 1.48508 * 109.47115 * 330.00084 * 17 15 13 21 21 C 1.47023 * 108.70303 * 335.87111 * 12 11 9 22 22 C 1.54322 * 107.27141 * 1.05937 * 21 12 11 23 23 C 1.53001 * 110.72133 * 263.82918 * 22 21 12 24 24 C 1.53002 * 110.72037 * 140.55503 * 22 21 12 25 25 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 28 28 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 29 29 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 31 31 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 32 32 H 0.96999 * 119.99721 * 359.97438 * 8 6 5 33 33 H 1.09001 * 110.36704 * 37.77533 * 11 9 8 34 34 H 1.09000 * 110.36657 * 159.98540 * 11 9 8 35 35 H 0.96999 * 120.00562 * 180.02562 * 16 15 13 36 36 H 1.08995 * 109.88403 * 120.47835 * 21 12 11 37 37 H 1.09001 * 109.88446 * 241.64342 * 21 12 11 38 38 H 1.09007 * 109.46951 * 173.52087 * 23 22 21 39 39 H 1.08994 * 109.46898 * 293.52198 * 23 22 21 40 40 H 1.08999 * 109.46997 * 53.52083 * 23 22 21 41 41 H 1.08993 * 109.47017 * 306.47434 * 24 22 21 42 42 H 1.08994 * 109.47178 * 66.47970 * 24 22 21 43 43 H 1.08997 * 109.46992 * 186.47886 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0207 -0.6939 1.2018 5 6 2.4121 -1.2474 2.1603 6 6 2.8895 -1.9224 3.3296 7 8 3.7362 -2.7895 3.2280 8 7 2.4005 -1.5969 4.5426 9 6 2.8892 -2.2871 5.7387 10 1 3.9575 -2.4895 5.6614 11 6 2.0937 -3.5922 5.9907 12 7 0.8553 -3.1558 6.6610 13 6 -0.3319 -3.8383 6.6674 14 1 -1.1854 -3.4323 7.1898 15 6 -0.4382 -5.0522 6.0024 16 7 0.6019 -5.5468 5.3653 17 14 -2.0578 -5.9828 6.0105 18 1 -2.8790 -5.5574 4.8487 19 1 -1.7913 -7.4410 5.9209 20 1 -2.7907 -5.6900 7.2685 21 6 1.1057 -1.8661 7.3209 22 6 2.5677 -1.4740 7.0205 23 6 3.4871 -1.8902 8.1704 24 6 2.6810 0.0279 6.7513 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.7254 -0.9050 4.6235 33 1 1.8608 -4.0830 5.0457 34 1 2.6603 -4.2632 6.6362 35 1 0.5275 -6.3948 4.9003 36 1 0.4297 -1.1090 6.9237 37 1 0.9624 -1.9661 8.3968 38 1 4.5248 -1.7093 7.8897 39 1 3.2442 -1.3075 9.0589 40 1 3.3474 -2.9503 8.3818 41 1 1.9769 0.3109 5.9689 42 1 2.4515 0.5788 7.6633 43 1 3.6954 0.2639 6.4298 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570895799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:43 Heat of formation + Delta-G solvation = 7.518308 kcal Electronic energy + Delta-G solvation = -22143.346703 eV Core-core repulsion = 18996.461563 eV Total energy + Delta-G solvation = -3146.885140 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.28332 -39.47425 -37.32423 -35.72240 -34.63933 -32.89673 -32.62631 -29.90361 -28.11652 -28.04957 -27.45358 -25.82212 -24.41918 -22.72732 -21.81526 -20.57827 -19.30718 -18.73205 -17.58382 -17.09248 -16.69158 -16.16257 -15.84061 -15.61990 -15.38652 -15.27662 -14.68221 -14.41376 -14.16081 -13.77168 -13.69566 -13.09822 -13.08019 -13.02695 -12.96562 -12.90262 -12.64607 -12.59630 -12.42831 -12.32748 -12.13878 -11.86317 -11.80118 -11.56003 -11.43496 -11.35238 -11.34451 -11.15350 -10.78522 -10.08603 -8.87113 -7.76978 -5.22537 0.51402 1.24721 1.42861 1.45080 1.54125 2.06663 2.47621 2.49961 3.17697 3.32986 3.52105 3.66542 3.94280 4.03842 4.04914 4.14465 4.18178 4.38014 4.46358 4.49039 4.71472 4.80398 4.82905 4.85676 4.90761 4.93193 4.95854 5.00816 5.08452 5.11666 5.18172 5.24982 5.32004 5.32745 5.36011 5.46139 5.51270 5.61379 5.80392 6.18691 6.29449 6.43321 7.06952 7.09325 7.77522 8.41239 9.23797 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012219 B = 0.005852 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.014920 B = 4783.413726 C = 6156.284400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.005 3.995 3 C -0.140 4.140 4 C -0.047 4.047 5 C -0.272 4.272 6 C 0.626 3.374 7 O -0.575 6.575 8 N -0.677 5.677 9 C 0.133 3.867 10 H 0.085 0.915 11 C 0.153 3.847 12 N -0.619 5.619 13 C -0.234 4.234 14 H 0.086 0.914 15 C -0.070 4.070 16 N -0.951 5.951 17 Si 0.978 3.022 18 H -0.287 1.287 19 H -0.298 1.298 20 H -0.265 1.265 21 C 0.138 3.862 22 C -0.072 4.072 23 C -0.126 4.126 24 C -0.125 4.125 25 H 0.099 0.901 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.118 0.882 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.409 0.591 33 H 0.067 0.933 34 H -0.009 1.009 35 H 0.243 0.757 36 H 0.034 0.966 37 H 0.030 0.970 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.034 0.966 41 H 0.055 0.945 42 H 0.081 0.919 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.148 18.128 -5.828 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.013 4.013 3 C -0.197 4.197 4 C -0.049 4.049 5 C -0.275 4.275 6 C 0.414 3.586 7 O -0.457 6.457 8 N -0.327 5.327 9 C 0.027 3.973 10 H 0.103 0.897 11 C 0.027 3.973 12 N -0.345 5.345 13 C -0.363 4.363 14 H 0.103 0.897 15 C -0.262 4.262 16 N -0.601 5.601 17 Si 0.807 3.193 18 H -0.214 1.214 19 H -0.225 1.225 20 H -0.190 1.190 21 C 0.013 3.987 22 C -0.073 4.073 23 C -0.183 4.183 24 C -0.183 4.183 25 H 0.118 0.882 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.135 0.865 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.246 0.754 33 H 0.085 0.915 34 H 0.009 0.991 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.633 17.352 -5.887 18.511 hybrid contribution -0.966 -1.270 0.185 1.606 sum 1.667 16.082 -5.703 17.144 Atomic orbital electron populations 1.21873 0.91838 1.02487 1.04076 1.18897 0.96921 0.96173 0.89291 1.21838 1.01532 0.92299 1.04077 1.23557 0.93174 0.93354 0.94840 1.20701 1.05445 1.03556 0.97832 1.14997 0.80833 0.80903 0.81823 1.90791 1.34750 1.33328 1.86828 1.45554 1.42285 1.39853 1.04960 1.22344 0.97586 0.93541 0.83810 0.89656 1.21947 0.85653 0.92164 0.97559 1.44692 1.08313 1.21109 1.60349 1.19460 0.89007 1.00869 1.26925 0.89651 1.25660 1.00833 0.99049 1.00672 1.70122 1.30108 1.20207 1.39621 0.85072 0.78985 0.77158 0.78102 1.21413 1.22488 1.18985 1.21662 0.94184 0.87166 0.95703 1.21845 0.95152 0.96759 0.93560 1.21692 0.98821 1.00817 0.96988 1.21705 1.02379 0.91619 1.02587 0.88211 0.93404 0.92278 0.86463 0.92288 0.88463 0.92137 0.75374 0.91484 0.99086 0.94760 0.94840 0.95239 0.91042 0.89895 0.94640 0.92645 0.89980 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.15 71.98 0.66 -1.60 16 2 C 0.01 0.09 3.30 -12.60 -0.04 0.04 16 3 C -0.14 -1.74 9.15 71.98 0.66 -1.08 16 4 C -0.05 -1.32 12.56 31.12 0.39 -0.92 16 5 C -0.27 -9.81 13.61 30.02 0.41 -9.40 16 6 C 0.63 26.62 7.65 85.49 0.65 27.28 16 7 O -0.58 -29.09 16.83 -4.07 -0.07 -29.16 16 8 N -0.68 -25.92 4.68 -443.51 -2.08 -28.00 16 9 C 0.13 5.37 2.56 46.38 0.12 5.49 16 10 H 0.09 3.51 7.63 -2.39 -0.02 3.49 16 11 C 0.15 8.08 5.27 86.86 0.46 8.54 16 12 N -0.62 -31.98 3.39 -691.99 -2.35 -34.33 16 13 C -0.23 -13.23 10.27 84.03 0.86 -12.37 16 14 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 15 C -0.07 -4.10 5.49 84.86 0.47 -3.63 16 16 N -0.95 -60.28 10.09 21.65 0.22 -60.06 16 17 Si 0.98 47.12 29.55 68.60 2.03 49.15 16 18 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 19 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 21 C 0.14 5.40 6.41 86.73 0.56 5.96 16 22 C -0.07 -2.31 0.81 -50.99 -0.04 -2.35 16 23 C -0.13 -3.58 8.41 71.98 0.61 -2.97 16 24 C -0.13 -2.90 8.07 71.98 0.58 -2.32 16 25 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.41 13.68 6.85 -92.71 -0.63 13.04 16 33 H 0.07 4.21 5.87 -2.39 -0.01 4.20 16 34 H -0.01 -0.50 7.81 -2.39 -0.02 -0.52 16 35 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 36 H 0.03 1.25 7.76 -2.39 -0.02 1.23 16 37 H 0.03 1.15 7.84 -2.39 -0.02 1.13 16 38 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.03 1.21 7.58 -2.39 -0.02 1.19 16 41 H 0.05 1.26 6.35 -2.39 -0.02 1.24 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -77.05 351.96 4.44 -72.61 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.36 Total: 19.13 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 6.34 Total: 10.66 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -4.21 Total: -122.39 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.07 Total: -29.16 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -77.05 4.44 -72.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570895799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.129 kcal (2) G-P(sol) polarization free energy of solvation -77.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds