Wall clock time and date at job start Tue Mar 31 2020 00:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.47482 * 2 1 4 4 C 1.32997 * 120.00402 * 123.52839 * 3 2 1 5 5 C 1.50705 * 119.99418 * 5.98636 * 4 3 2 6 6 C 1.47097 * 120.00315 * 185.98605 * 4 3 2 7 7 O 1.21617 * 119.99980 * 359.97438 * 6 4 3 8 8 N 1.34772 * 119.99766 * 180.02562 * 6 4 3 9 9 C 1.46503 * 119.99734 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.47304 * 179.97438 * 9 8 6 11 11 C 1.57118 * 116.96225 * 243.00792 * 10 9 8 12 12 H 1.09000 * 119.80016 * 3.77952 * 11 10 9 13 13 C 1.54784 * 118.02078 * 161.36453 * 11 10 9 14 14 N 1.48153 * 104.42031 * 86.47445 * 13 11 10 15 15 C 1.36929 * 127.84043 * 140.36460 * 14 13 11 16 16 H 1.08005 * 120.00185 * 336.61384 * 15 14 13 17 17 C 1.38814 * 120.00321 * 156.61185 * 15 14 13 18 18 N 1.31626 * 119.99454 * 335.24533 * 17 15 14 19 19 Si 1.86797 * 120.00502 * 155.24371 * 17 15 14 20 20 H 1.48505 * 109.46904 * 60.00080 * 19 17 15 21 21 H 1.48500 * 109.46981 * 300.00459 * 19 17 15 22 22 H 1.48493 * 109.47218 * 180.02562 * 19 17 15 23 23 C 1.48150 * 104.31940 * 320.10849 * 14 13 11 24 24 C 1.52999 * 117.44590 * 175.00068 * 10 9 8 25 25 H 1.08997 * 119.53523 * 354.28953 * 24 10 9 26 26 H 1.09002 * 109.47446 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47244 * 300.00228 * 1 2 3 28 28 H 1.09007 * 109.46646 * 60.00119 * 1 2 3 29 29 H 1.09003 * 109.46948 * 239.99756 * 2 1 3 30 30 H 1.09002 * 109.46600 * 120.00356 * 2 1 3 31 31 H 1.08008 * 119.99959 * 303.53278 * 3 2 1 32 32 H 1.09000 * 109.46755 * 177.80590 * 5 4 3 33 33 H 1.08999 * 109.47323 * 297.79777 * 5 4 3 34 34 H 1.08991 * 109.47274 * 57.80316 * 5 4 3 35 35 H 0.97001 * 120.00352 * 359.97438 * 8 6 4 36 36 H 1.09001 * 109.47028 * 59.99954 * 9 8 6 37 37 H 1.08996 * 109.47303 * 299.99960 * 9 8 6 38 38 H 1.09002 * 115.51020 * 29.58787 * 10 9 8 39 39 H 1.09000 * 110.54523 * 327.73487 * 13 11 10 40 40 H 1.09001 * 110.46324 * 205.16983 * 13 11 10 41 41 H 0.96997 * 120.00541 * 353.86655 * 18 17 15 42 42 H 1.08998 * 110.40624 * 158.63174 * 23 14 13 43 43 H 1.08997 * 110.40384 * 281.05765 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8539 1.8356 0.9601 5 6 3.3895 0.8535 1.9699 6 6 3.2397 3.2531 1.0364 7 8 2.8078 4.0455 0.2211 8 7 4.0726 3.6733 2.0090 9 6 4.4573 5.0849 2.0846 10 6 5.4014 5.2935 3.2704 11 6 4.9002 6.2367 4.4227 12 1 3.8953 6.6569 4.3803 13 6 5.5957 6.1331 5.8016 14 7 6.7618 7.0409 5.6958 15 6 7.2554 7.8891 6.6507 16 1 6.6132 8.2407 7.4447 17 6 8.5812 8.2970 6.5984 18 7 9.4755 7.5509 5.9851 19 14 9.0962 9.9046 7.3982 20 1 8.7937 9.8537 8.8512 21 1 8.3504 11.0280 6.7763 22 1 10.5538 10.1101 7.2025 23 6 7.2764 6.8181 4.3245 24 6 6.0109 6.6853 3.4502 25 1 5.8374 7.4497 2.6929 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7253 2.1021 -0.7797 32 1 4.0712 1.3658 2.6488 33 1 2.5619 0.4289 2.5382 34 1 3.9227 0.0556 1.4533 35 1 4.4173 3.0412 2.6590 36 1 3.5658 5.6978 2.2182 37 1 4.9620 5.3739 1.1628 38 1 6.0205 4.4360 3.5340 39 1 5.9255 5.1110 5.9878 40 1 4.9247 6.4672 6.5929 41 1 9.2280 6.6758 5.6476 42 1 7.8748 7.6694 4.0001 43 1 7.8645 5.9013 4.2836 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570914153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:25 Heat of formation + Delta-G solvation = 22.139832 kcal Electronic energy + Delta-G solvation = -20941.310318 eV Core-core repulsion = 17795.059215 eV Total energy + Delta-G solvation = -3146.251103 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.00355 -38.75568 -36.41568 -35.11235 -33.57242 -32.12465 -30.70073 -27.62595 -27.32531 -27.13402 -25.02366 -23.91633 -21.37354 -21.16357 -20.16711 -19.37398 -18.55240 -17.45452 -17.31685 -16.23837 -15.46118 -15.09684 -14.64735 -14.47567 -14.12170 -13.90454 -13.65415 -13.49578 -13.26106 -13.05842 -12.91342 -12.83539 -12.56336 -12.13736 -11.93785 -11.66227 -11.63294 -11.22883 -10.93408 -10.71824 -10.55839 -10.50954 -10.07885 -10.02470 -9.65661 -9.50050 -9.32493 -9.21228 -8.93052 -8.48783 -7.01349 -6.15704 -3.23753 1.14407 3.07139 3.16759 3.47648 3.51839 3.69667 3.91522 4.42051 4.53975 4.57149 4.71260 4.76430 4.85392 4.90130 5.09090 5.18266 5.24538 5.26094 5.28392 5.37994 5.42403 5.49450 5.58087 5.60229 5.64884 5.77063 5.79547 5.80246 5.87377 5.96541 6.16267 6.24031 6.31589 6.40762 6.55046 6.57384 6.76131 6.95149 6.97044 7.44863 7.73979 8.14330 8.42262 8.94094 9.74781 10.39056 11.18964 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.050921 B = 0.002615 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.742454 B =10703.917826 C =10813.062219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.073 4.073 4 C -0.187 4.187 5 C -0.116 4.116 6 C 0.550 3.450 7 O -0.549 6.549 8 N -0.720 5.720 9 C 0.154 3.846 10 C -0.152 4.152 11 C -0.167 4.167 12 H 0.108 0.892 13 C 0.152 3.848 14 N -0.597 5.597 15 C -0.331 4.331 16 H 0.063 0.937 17 C -0.025 4.025 18 N -0.916 5.916 19 Si 1.069 2.931 20 H -0.292 1.292 21 H -0.293 1.293 22 H -0.284 1.284 23 C 0.164 3.836 24 C -0.154 4.154 25 H 0.105 0.895 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.402 0.598 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.023 0.977 40 H 0.052 0.948 41 H 0.268 0.732 42 H 0.066 0.934 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.210 -15.342 -10.121 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.093 4.093 4 C -0.190 4.190 5 C -0.172 4.172 6 C 0.339 3.661 7 O -0.428 6.428 8 N -0.372 5.372 9 C 0.031 3.969 10 C -0.172 4.172 11 C -0.186 4.186 12 H 0.125 0.875 13 C 0.026 3.974 14 N -0.322 5.322 15 C -0.459 4.459 16 H 0.081 0.919 17 C -0.227 4.227 18 N -0.555 5.555 19 Si 0.898 3.102 20 H -0.219 1.219 21 H -0.220 1.220 22 H -0.210 1.210 23 C 0.038 3.962 24 C -0.175 4.175 25 H 0.123 0.877 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.144 0.856 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.238 0.762 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -13.141 -13.586 -10.298 21.524 hybrid contribution -1.158 -1.273 0.071 1.722 sum -14.299 -14.859 -10.227 23.018 Atomic orbital electron populations 1.21694 0.94389 1.01973 1.02448 1.20831 0.96619 0.93635 1.03308 1.23579 0.92548 0.97256 0.95878 1.21453 1.03183 0.93619 1.00721 1.20811 1.01029 0.97926 0.97468 1.18379 0.78476 0.88412 0.80861 1.90782 1.55087 1.56159 1.40819 1.46019 1.48507 1.10884 1.31800 1.20847 0.97554 0.81102 0.97383 1.23172 1.01584 0.95576 0.96824 1.24763 0.98175 1.03404 0.92299 0.87453 1.21230 0.90280 0.93448 0.92396 1.45292 1.32232 1.45301 1.09347 1.19725 0.95329 1.22930 1.07927 0.91884 1.25918 0.91027 1.04856 1.00920 1.70770 1.34452 1.10959 1.39369 0.83466 0.76040 0.75290 0.75366 1.21888 1.21977 1.20983 1.21147 0.91544 0.99158 0.84372 1.23942 0.98108 0.94815 1.00621 0.87723 0.92153 0.92407 0.92336 0.90242 0.90489 0.85631 0.91854 0.90845 0.90863 0.76175 0.91307 0.91059 0.87745 0.95905 0.92918 0.92135 0.91594 0.95623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 37.16 0.37 -0.47 16 2 C -0.11 -0.65 6.20 -27.89 -0.17 -0.83 16 3 C -0.07 -0.65 9.08 -36.13 -0.33 -0.98 16 4 C -0.19 -1.85 5.99 -102.84 -0.62 -2.47 16 5 C -0.12 -0.81 8.53 36.01 0.31 -0.50 16 6 C 0.55 7.32 7.75 -12.67 -0.10 7.22 16 7 O -0.55 -9.33 16.23 5.26 0.09 -9.24 16 8 N -0.72 -8.70 5.52 -61.49 -0.34 -9.04 16 9 C 0.15 2.12 5.96 -4.04 -0.02 2.09 16 10 C -0.15 -2.30 5.60 -88.38 -0.49 -2.79 16 11 C -0.17 -2.92 6.94 -86.77 -0.60 -3.52 16 12 H 0.11 1.75 8.14 -51.93 -0.42 1.32 16 13 C 0.15 3.20 7.08 -2.19 -0.02 3.19 16 14 N -0.60 -15.31 3.19 -168.61 -0.54 -15.85 16 15 C -0.33 -9.43 10.17 -15.06 -0.15 -9.58 16 16 H 0.06 1.78 7.94 -52.48 -0.42 1.37 16 17 C -0.03 -0.72 5.11 -17.43 -0.09 -0.81 16 18 N -0.92 -27.73 12.88 55.49 0.71 -27.01 16 19 Si 1.07 25.36 29.99 -169.99 -5.10 20.26 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.16 3.80 5.04 -2.41 -0.01 3.79 16 24 C -0.15 -2.84 6.71 -89.22 -0.60 -3.44 16 25 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.41 5.90 -51.93 -0.31 0.10 16 31 H 0.13 1.28 7.51 -52.48 -0.39 0.88 16 32 H 0.06 0.42 5.84 -51.93 -0.30 0.12 16 33 H 0.07 0.44 7.57 -51.93 -0.39 0.04 16 34 H 0.07 0.43 8.00 -51.93 -0.42 0.01 16 35 H 0.40 3.96 6.13 -40.82 -0.25 3.71 16 36 H 0.07 0.99 7.95 -51.93 -0.41 0.58 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.10 1.54 8.04 -51.93 -0.42 1.13 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.27 8.13 6.55 -40.82 -0.27 7.86 16 42 H 0.07 1.69 7.60 -51.93 -0.39 1.30 16 43 H 0.03 0.61 7.66 -51.93 -0.40 0.22 16 LS Contribution 349.13 15.07 5.26 5.26 Total: -1.00 -33.18 349.13 -9.41 -42.59 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.97 Total: 2.13 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -2.53 Total: -9.10 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.16 Total: -51.91 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.10 Total: 20.26 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.18 -9.41 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570914153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.733 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds