Wall clock time and date at job start Tue Mar 31 2020 00:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.47482 * 2 1 4 4 C 1.32997 * 120.00402 * 123.52839 * 3 2 1 5 5 C 1.50705 * 119.99418 * 5.98636 * 4 3 2 6 6 C 1.47097 * 120.00315 * 185.98605 * 4 3 2 7 7 O 1.21617 * 119.99980 * 359.97438 * 6 4 3 8 8 N 1.34772 * 119.99766 * 180.02562 * 6 4 3 9 9 C 1.46503 * 119.99734 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.47304 * 179.97438 * 9 8 6 11 11 C 1.57118 * 116.96225 * 243.00792 * 10 9 8 12 12 H 1.09000 * 119.80016 * 3.77952 * 11 10 9 13 13 C 1.54784 * 118.02078 * 161.36453 * 11 10 9 14 14 N 1.48153 * 104.42031 * 86.47445 * 13 11 10 15 15 C 1.36929 * 127.84043 * 140.36460 * 14 13 11 16 16 H 1.08005 * 120.00185 * 336.61384 * 15 14 13 17 17 C 1.38814 * 120.00321 * 156.61185 * 15 14 13 18 18 N 1.31626 * 119.99454 * 335.24533 * 17 15 14 19 19 Si 1.86797 * 120.00502 * 155.24371 * 17 15 14 20 20 H 1.48505 * 109.46904 * 60.00080 * 19 17 15 21 21 H 1.48500 * 109.46981 * 300.00459 * 19 17 15 22 22 H 1.48493 * 109.47218 * 180.02562 * 19 17 15 23 23 C 1.48150 * 104.31940 * 320.10849 * 14 13 11 24 24 C 1.52999 * 117.44590 * 175.00068 * 10 9 8 25 25 H 1.08997 * 119.53523 * 354.28953 * 24 10 9 26 26 H 1.09002 * 109.47446 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47244 * 300.00228 * 1 2 3 28 28 H 1.09007 * 109.46646 * 60.00119 * 1 2 3 29 29 H 1.09003 * 109.46948 * 239.99756 * 2 1 3 30 30 H 1.09002 * 109.46600 * 120.00356 * 2 1 3 31 31 H 1.08008 * 119.99959 * 303.53278 * 3 2 1 32 32 H 1.09000 * 109.46755 * 177.80590 * 5 4 3 33 33 H 1.08999 * 109.47323 * 297.79777 * 5 4 3 34 34 H 1.08991 * 109.47274 * 57.80316 * 5 4 3 35 35 H 0.97001 * 120.00352 * 359.97438 * 8 6 4 36 36 H 1.09001 * 109.47028 * 59.99954 * 9 8 6 37 37 H 1.08996 * 109.47303 * 299.99960 * 9 8 6 38 38 H 1.09002 * 115.51020 * 29.58787 * 10 9 8 39 39 H 1.09000 * 110.54523 * 327.73487 * 13 11 10 40 40 H 1.09001 * 110.46324 * 205.16983 * 13 11 10 41 41 H 0.96997 * 120.00541 * 353.86655 * 18 17 15 42 42 H 1.08998 * 110.40624 * 158.63174 * 23 14 13 43 43 H 1.08997 * 110.40384 * 281.05765 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8539 1.8356 0.9601 5 6 3.3895 0.8535 1.9699 6 6 3.2397 3.2531 1.0364 7 8 2.8078 4.0455 0.2211 8 7 4.0726 3.6733 2.0090 9 6 4.4573 5.0849 2.0846 10 6 5.4014 5.2935 3.2704 11 6 4.9002 6.2367 4.4227 12 1 3.8953 6.6569 4.3803 13 6 5.5957 6.1331 5.8016 14 7 6.7618 7.0409 5.6958 15 6 7.2554 7.8891 6.6507 16 1 6.6132 8.2407 7.4447 17 6 8.5812 8.2970 6.5984 18 7 9.4755 7.5509 5.9851 19 14 9.0962 9.9046 7.3982 20 1 8.7937 9.8537 8.8512 21 1 8.3504 11.0280 6.7763 22 1 10.5538 10.1101 7.2025 23 6 7.2764 6.8181 4.3245 24 6 6.0109 6.6853 3.4502 25 1 5.8374 7.4497 2.6929 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7253 2.1021 -0.7797 32 1 4.0712 1.3658 2.6488 33 1 2.5619 0.4289 2.5382 34 1 3.9227 0.0556 1.4533 35 1 4.4173 3.0412 2.6590 36 1 3.5658 5.6978 2.2182 37 1 4.9620 5.3739 1.1628 38 1 6.0205 4.4360 3.5340 39 1 5.9255 5.1110 5.9878 40 1 4.9247 6.4672 6.5929 41 1 9.2280 6.6758 5.6476 42 1 7.8748 7.6694 4.0001 43 1 7.8645 5.9013 4.2836 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570914153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:24 Heat of formation + Delta-G solvation = 1.943011 kcal Electronic energy + Delta-G solvation = -20942.186118 eV Core-core repulsion = 17795.059215 eV Total energy + Delta-G solvation = -3147.126903 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.08428 -40.27132 -37.13086 -36.49893 -35.21074 -33.00623 -32.29387 -29.20930 -28.77667 -27.86380 -26.69261 -24.78647 -22.96622 -22.17500 -21.58662 -20.93618 -19.53550 -19.44621 -18.13108 -17.30192 -16.64563 -16.46610 -15.86166 -15.68631 -15.45392 -15.17419 -14.97897 -14.88127 -14.51478 -14.42102 -13.82753 -13.54744 -13.44859 -13.37975 -13.04516 -12.73030 -12.58959 -12.50886 -12.40470 -12.21162 -12.16795 -11.91357 -11.71208 -11.62043 -11.17669 -10.86608 -10.72814 -10.58288 -10.22545 -9.86931 -9.09900 -8.39287 -5.44159 0.35365 1.56181 1.64422 1.83483 2.05464 2.22605 2.50619 2.62204 3.12085 3.47788 3.51992 3.67996 3.71488 3.94495 4.03323 4.14019 4.18322 4.26862 4.27549 4.31922 4.44976 4.51525 4.59823 4.71560 4.74234 4.75438 4.82634 4.86479 4.99527 5.04411 5.06656 5.10069 5.15136 5.23477 5.26965 5.33430 5.37865 5.53961 5.61468 5.62660 6.24631 6.50224 6.79764 7.15929 7.61237 8.30174 8.95148 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.050921 B = 0.002615 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.742454 B =10703.917826 C =10813.062219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C -0.065 4.065 4 C -0.201 4.201 5 C -0.112 4.112 6 C 0.545 3.455 7 O -0.594 6.594 8 N -0.711 5.711 9 C 0.162 3.838 10 C -0.110 4.110 11 C -0.159 4.159 12 H 0.128 0.872 13 C 0.147 3.853 14 N -0.625 5.625 15 C -0.342 4.342 16 H 0.060 0.940 17 C -0.079 4.079 18 N -0.944 5.944 19 Si 1.120 2.880 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.290 1.290 23 C 0.169 3.831 24 C -0.166 4.166 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.414 0.586 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.114 0.886 39 H 0.027 0.973 40 H 0.054 0.946 41 H 0.254 0.746 42 H 0.030 0.970 43 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.659 -16.815 -10.190 25.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.140 4.140 3 C -0.085 4.085 4 C -0.203 4.203 5 C -0.169 4.169 6 C 0.335 3.665 7 O -0.477 6.477 8 N -0.364 5.364 9 C 0.038 3.962 10 C -0.128 4.128 11 C -0.178 4.178 12 H 0.145 0.855 13 C 0.022 3.978 14 N -0.350 5.350 15 C -0.470 4.470 16 H 0.078 0.922 17 C -0.275 4.275 18 N -0.586 5.586 19 Si 0.944 3.056 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.216 1.216 23 C 0.043 3.957 24 C -0.186 4.186 25 H 0.134 0.866 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.253 0.747 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.132 0.868 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -14.618 -15.103 -10.348 23.428 hybrid contribution -0.773 -0.879 0.054 1.171 sum -15.391 -15.981 -10.294 24.459 Atomic orbital electron populations 1.21708 0.94063 1.02860 1.01934 1.20889 0.96754 0.91676 1.04636 1.23769 0.91503 0.98550 0.94707 1.21499 1.04234 0.92253 1.02356 1.20859 1.01607 0.97511 0.96894 1.18966 0.77798 0.89624 0.80109 1.90758 1.56803 1.57617 1.42486 1.45907 1.48162 1.10381 1.31942 1.20658 0.96997 0.82224 0.96304 1.23066 1.00095 0.93962 0.95726 1.24666 0.98212 1.04605 0.90332 0.85460 1.21365 0.89033 0.92679 0.94677 1.45593 1.33324 1.46179 1.09919 1.20005 0.95457 1.23163 1.08369 0.92250 1.27361 0.91388 1.07357 1.01363 1.70888 1.35106 1.10935 1.41625 0.82793 0.75326 0.71765 0.75735 1.19682 1.20653 1.21602 1.20975 0.93138 0.97012 0.84548 1.23719 0.95875 0.97910 1.01107 0.86587 0.90559 0.93101 0.92750 0.88907 0.89046 0.87529 0.91561 0.89462 0.89416 0.74663 0.91463 0.91276 0.86819 0.95493 0.92785 0.93662 0.95136 0.96792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 71.98 0.71 -0.66 16 2 C -0.10 -0.99 6.20 29.85 0.18 -0.81 16 3 C -0.07 -1.08 9.08 24.52 0.22 -0.86 16 4 C -0.20 -3.61 5.99 -18.70 -0.11 -3.72 16 5 C -0.11 -1.22 8.53 71.24 0.61 -0.61 16 6 C 0.54 13.82 7.75 86.57 0.67 14.49 16 7 O -0.59 -20.04 16.23 -4.08 -0.07 -20.10 16 8 N -0.71 -15.73 5.52 -466.71 -2.58 -18.30 16 9 C 0.16 4.11 5.96 86.38 0.51 4.63 16 10 C -0.11 -3.07 5.60 -9.35 -0.05 -3.12 16 11 C -0.16 -5.26 6.94 -8.30 -0.06 -5.32 16 12 H 0.13 3.78 8.14 -2.39 -0.02 3.76 16 13 C 0.15 6.08 7.08 86.67 0.61 6.70 16 14 N -0.62 -32.47 3.19 -687.36 -2.20 -34.66 16 15 C -0.34 -19.71 10.17 84.04 0.85 -18.86 16 16 H 0.06 3.39 7.94 -2.91 -0.02 3.36 16 17 C -0.08 -4.59 5.11 84.86 0.43 -4.15 16 18 N -0.94 -58.74 12.88 21.65 0.28 -58.46 16 19 Si 1.12 51.53 29.99 68.60 2.06 53.59 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 23 C 0.17 8.03 5.04 86.53 0.44 8.47 16 24 C -0.17 -5.97 6.71 -9.89 -0.07 -6.04 16 25 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 26 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.65 5.90 -2.39 -0.01 0.64 16 31 H 0.11 2.16 7.51 -2.91 -0.02 2.14 16 32 H 0.07 0.67 5.84 -2.39 -0.01 0.66 16 33 H 0.09 0.73 7.57 -2.39 -0.02 0.71 16 34 H 0.09 0.72 8.00 -2.39 -0.02 0.70 16 35 H 0.41 7.04 6.13 -92.71 -0.57 6.47 16 36 H 0.07 1.79 7.95 -2.39 -0.02 1.77 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.11 3.06 8.04 -2.39 -0.02 3.05 16 39 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.05 2.18 8.14 -2.39 -0.02 2.17 16 41 H 0.25 16.01 6.55 -92.71 -0.61 15.40 16 42 H 0.03 1.63 7.60 -2.39 -0.02 1.61 16 43 H 0.01 0.70 7.66 -2.39 -0.02 0.68 16 Total: -1.00 -73.80 349.13 3.05 -70.75 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.59 Total: 17.05 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 4.96 Total: -9.86 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -4.49 Total: -111.43 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.07 Total: -20.10 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 2.06 Total: 53.59 kcal Total: -73.80 3.05 -70.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570914153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.695 kcal (2) G-P(sol) polarization free energy of solvation -73.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds