Wall clock time and date at job start Tue Mar 31 2020 00:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52991 * 109.47443 * 2 1 4 4 C 1.47195 * 109.46784 * 120.00113 * 2 1 3 5 5 C 2.64602 * 109.46884 * 120.00107 * 2 1 3 6 6 C 4.07800 * 109.46927 * 120.00111 * 2 1 3 7 7 O 1.21615 * 120.00266 * 36.82677 * 6 5 4 8 8 N 1.34775 * 119.99891 * 216.82838 * 6 5 4 9 9 C 1.46498 * 119.99774 * 180.02562 * 8 6 5 10 10 C 1.53012 * 109.47039 * 179.97438 * 9 8 6 11 11 H 1.08994 * 109.58195 * 59.63142 * 10 9 8 12 12 C 1.53186 * 109.58459 * 179.91699 * 10 9 8 13 13 C 1.53048 * 109.31035 * 174.56672 * 12 10 9 14 14 C 1.53042 * 109.53363 * 298.63136 * 13 12 10 15 15 C 1.53188 * 109.31140 * 61.36767 * 14 13 12 16 16 N 1.46924 * 109.70075 * 299.27400 * 10 9 8 17 17 C 1.36939 * 120.63524 * 6.56037 * 16 10 9 18 18 H 1.08003 * 119.99306 * 328.31947 * 17 16 10 19 19 C 1.38807 * 120.00381 * 148.31965 * 17 16 10 20 20 N 1.31613 * 120.00081 * 345.46032 * 19 17 16 21 21 Si 1.86808 * 119.99953 * 165.45534 * 19 17 16 22 22 H 1.48496 * 109.46896 * 90.00276 * 21 19 17 23 23 H 1.48500 * 109.47046 * 209.99958 * 21 19 17 24 24 H 1.48497 * 109.46955 * 330.00000 * 21 19 17 25 25 H 1.08993 * 109.46884 * 300.00245 * 1 2 3 26 26 H 1.09001 * 109.46822 * 59.99627 * 1 2 3 27 27 H 1.09000 * 109.47001 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47106 * 239.99532 * 2 1 3 29 29 H 1.09000 * 109.47262 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47416 * 300.00009 * 3 2 1 31 31 H 1.09001 * 109.47351 * 59.99682 * 3 2 1 32 32 H 0.97005 * 119.99967 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.47679 * 59.99990 * 9 8 6 34 34 H 1.09000 * 109.47581 * 299.99581 * 9 8 6 35 35 H 1.09004 * 109.49909 * 294.50765 * 12 10 9 36 36 H 1.08991 * 109.50480 * 54.61373 * 12 10 9 37 37 H 1.09000 * 109.45913 * 58.65266 * 13 12 10 38 38 H 1.08996 * 109.45992 * 178.61497 * 13 12 10 39 39 H 1.08995 * 109.49765 * 301.41353 * 14 13 12 40 40 H 1.09001 * 109.52050 * 181.33543 * 14 13 12 41 41 H 1.09004 * 109.58734 * 185.57557 * 15 14 13 42 42 H 1.09000 * 109.70562 * 65.22280 * 15 14 13 43 43 H 0.97001 * 120.00366 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0206 -0.6939 1.2019 5 6 2.4120 -1.2474 2.1605 6 6 2.8893 -1.9225 3.3297 7 8 2.7012 -3.1167 3.4617 8 7 3.5469 -1.2343 4.2838 9 6 4.0357 -1.9251 5.4797 10 6 4.7414 -0.9225 6.3952 11 1 4.0431 -0.1371 6.6838 12 6 5.2518 -1.6418 7.6476 13 6 6.0724 -0.6650 8.4932 14 6 7.2806 -0.1812 7.6879 15 6 6.7931 0.5546 6.4358 16 7 5.8863 -0.3294 5.6909 17 6 6.1038 -0.5949 4.3652 18 1 5.8197 -1.5516 3.9525 19 6 6.6893 0.3656 3.5519 20 7 6.7744 1.6129 3.9631 21 14 7.3567 -0.1123 1.8738 22 1 6.2863 0.0354 0.8551 23 1 8.4976 0.7718 1.5247 24 1 7.8165 -1.5239 1.9077 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 3.6973 -0.2818 4.1783 33 1 4.7377 -2.7059 5.1870 34 1 3.1951 -2.3726 6.0100 35 1 4.4045 -2.0039 8.2300 36 1 5.8784 -2.4838 7.3538 37 1 5.4522 0.1888 8.7660 38 1 6.4163 -1.1675 9.3972 39 1 7.8880 -1.0370 7.3936 40 1 7.8778 0.4960 8.2985 41 1 7.6464 0.8146 5.8093 42 1 6.2629 1.4617 6.7257 43 1 7.1833 2.2842 3.3946 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661861735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:04 Heat of formation + Delta-G solvation = 16.849239 kcal Electronic energy + Delta-G solvation = -22193.826752 eV Core-core repulsion = 19047.346231 eV Total energy + Delta-G solvation = -3146.480520 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.19428 -37.68564 -36.27343 -34.17572 -33.07666 -31.83215 -30.55853 -29.92594 -27.24922 -26.27095 -25.03853 -23.24004 -22.16524 -21.21552 -20.52906 -19.20120 -18.13168 -16.40644 -15.86499 -15.62546 -15.50351 -14.69159 -14.35860 -14.04739 -13.82677 -13.55630 -13.47114 -13.38781 -12.85687 -12.45559 -12.32122 -12.07509 -12.01665 -11.81461 -11.47469 -11.40113 -11.22811 -10.98096 -10.77043 -10.58886 -10.30915 -10.17096 -10.14111 -10.01121 -9.97870 -9.71874 -9.51923 -9.35838 -8.60829 -8.28163 -6.66860 -5.86490 -3.32711 2.02953 2.67554 3.31737 3.39428 3.44331 3.66650 4.02830 4.42160 4.58111 4.92919 5.07954 5.17459 5.22436 5.30800 5.49269 5.52372 5.59884 5.64119 5.67884 5.72438 5.82113 5.93228 5.98640 6.05993 6.11497 6.13423 6.22467 6.29603 6.35109 6.39951 6.58204 6.69446 6.71827 6.83802 6.95201 7.09321 7.35704 7.59403 7.61894 7.77881 8.17882 8.38963 8.75760 9.14488 9.75832 10.34267 11.20430 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015377 B = 0.005913 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.507239 B = 4734.215889 C = 5795.315740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.012 3.988 3 C -0.147 4.147 4 C -0.099 4.099 5 C -0.202 4.202 6 C 0.622 3.378 7 O -0.551 6.551 8 N -0.678 5.678 9 C 0.134 3.866 10 C 0.160 3.840 11 H 0.033 0.967 12 C -0.127 4.127 13 C -0.107 4.107 14 C -0.144 4.144 15 C 0.174 3.826 16 N -0.588 5.588 17 C -0.254 4.254 18 H 0.069 0.931 19 C 0.011 3.989 20 N -0.897 5.897 21 Si 0.890 3.110 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.279 1.279 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.418 0.582 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.082 0.918 42 H 0.019 0.981 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.672 0.067 -0.899 7.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.006 4.006 3 C -0.204 4.204 4 C -0.102 4.102 5 C -0.205 4.205 6 C 0.408 3.592 7 O -0.432 6.432 8 N -0.327 5.327 9 C 0.010 3.990 10 C 0.053 3.947 11 H 0.050 0.950 12 C -0.167 4.167 13 C -0.145 4.145 14 C -0.183 4.183 15 C 0.049 3.951 16 N -0.312 5.312 17 C -0.383 4.383 18 H 0.086 0.914 19 C -0.189 4.189 20 N -0.541 5.541 21 Si 0.720 3.280 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.204 1.204 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.257 0.743 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.037 0.963 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.705 -0.607 -0.850 7.775 hybrid contribution 0.652 0.286 -0.957 1.193 sum -7.052 -0.321 -1.807 7.287 Atomic orbital electron populations 1.21828 0.93173 1.02562 1.02552 1.18409 0.95870 0.95262 0.91018 1.21849 1.02255 0.93829 1.02502 1.22465 0.95966 0.97061 0.94665 1.20941 1.02651 1.00035 0.96860 1.14730 0.78525 0.85426 0.80485 1.90780 1.59362 1.14200 1.78891 1.45895 1.53583 1.13928 1.19336 1.21377 0.97145 0.95590 0.84857 1.20738 0.89863 0.93203 0.90912 0.94985 1.21937 0.99078 0.98682 0.96980 1.21360 0.97525 0.98470 0.97128 1.22190 0.96771 1.00402 0.98970 1.20731 0.94477 0.90216 0.89681 1.44067 1.24713 1.55443 1.07006 1.19160 1.37565 0.97212 0.84395 0.91376 1.25062 1.01650 0.94733 0.97415 1.70008 1.46703 1.00141 1.37238 0.86475 0.78776 0.78029 0.84721 1.21224 1.21507 1.20425 0.92029 0.91487 0.92120 0.88550 0.91680 0.91573 0.91853 0.74335 0.91189 0.92228 0.92958 0.92007 0.92868 0.93679 0.92798 0.93523 0.89984 0.96318 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.15 37.16 0.34 -1.06 16 2 C 0.01 0.15 3.30 -93.41 -0.31 -0.16 16 3 C -0.15 -1.69 9.15 37.15 0.34 -1.35 16 4 C -0.10 -1.65 12.56 -37.12 -0.47 -2.11 16 5 C -0.20 -3.91 13.61 -38.84 -0.53 -4.44 16 6 C 0.62 13.09 7.65 -14.34 -0.11 12.98 16 7 O -0.55 -12.82 17.08 5.26 0.09 -12.73 16 8 N -0.68 -13.72 3.88 -62.76 -0.24 -13.97 16 9 C 0.13 2.57 4.43 -4.04 -0.02 2.55 16 10 C 0.16 3.09 3.00 -67.60 -0.20 2.89 16 11 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 12 C -0.13 -2.12 5.37 -26.61 -0.14 -2.26 16 13 C -0.11 -1.74 5.88 -26.68 -0.16 -1.90 16 14 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 15 C 0.17 3.91 5.26 -3.71 -0.02 3.89 16 16 N -0.59 -13.45 2.97 -164.78 -0.49 -13.94 16 17 C -0.25 -6.39 6.98 -15.06 -0.11 -6.50 16 18 H 0.07 1.78 5.91 -52.48 -0.31 1.47 16 19 C 0.01 0.29 4.95 -17.43 -0.09 0.20 16 20 N -0.90 -24.33 11.31 55.49 0.63 -23.71 16 21 Si 0.89 21.34 29.58 -169.99 -5.03 16.31 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.42 8.85 7.40 -40.82 -0.30 8.55 16 33 H 0.07 1.46 7.39 -51.93 -0.38 1.07 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 2.08 6.26 -51.93 -0.33 1.75 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 349.06 15.07 5.26 5.26 Total: -1.00 -28.95 349.06 -8.63 -37.58 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.22 Total: 5.28 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -1.63 Total: -0.08 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.10 Total: -51.61 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.95 -8.63 -37.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661861735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.429 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds