Wall clock time and date at job start Tue Mar 31 2020 00:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52991 * 109.47443 * 2 1 4 4 C 1.47195 * 109.46784 * 120.00113 * 2 1 3 5 5 C 2.64602 * 109.46884 * 120.00107 * 2 1 3 6 6 C 4.07800 * 109.46927 * 120.00111 * 2 1 3 7 7 O 1.21615 * 120.00266 * 36.82677 * 6 5 4 8 8 N 1.34775 * 119.99891 * 216.82838 * 6 5 4 9 9 C 1.46498 * 119.99774 * 180.02562 * 8 6 5 10 10 C 1.53012 * 109.47039 * 179.97438 * 9 8 6 11 11 H 1.08994 * 109.58195 * 59.63142 * 10 9 8 12 12 C 1.53186 * 109.58459 * 179.91699 * 10 9 8 13 13 C 1.53048 * 109.31035 * 174.56672 * 12 10 9 14 14 C 1.53042 * 109.53363 * 298.63136 * 13 12 10 15 15 C 1.53188 * 109.31140 * 61.36767 * 14 13 12 16 16 N 1.46924 * 109.70075 * 299.27400 * 10 9 8 17 17 C 1.36939 * 120.63524 * 6.56037 * 16 10 9 18 18 H 1.08003 * 119.99306 * 328.31947 * 17 16 10 19 19 C 1.38807 * 120.00381 * 148.31965 * 17 16 10 20 20 N 1.31613 * 120.00081 * 345.46032 * 19 17 16 21 21 Si 1.86808 * 119.99953 * 165.45534 * 19 17 16 22 22 H 1.48496 * 109.46896 * 90.00276 * 21 19 17 23 23 H 1.48500 * 109.47046 * 209.99958 * 21 19 17 24 24 H 1.48497 * 109.46955 * 330.00000 * 21 19 17 25 25 H 1.08993 * 109.46884 * 300.00245 * 1 2 3 26 26 H 1.09001 * 109.46822 * 59.99627 * 1 2 3 27 27 H 1.09000 * 109.47001 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47106 * 239.99532 * 2 1 3 29 29 H 1.09000 * 109.47262 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47416 * 300.00009 * 3 2 1 31 31 H 1.09001 * 109.47351 * 59.99682 * 3 2 1 32 32 H 0.97005 * 119.99967 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.47679 * 59.99990 * 9 8 6 34 34 H 1.09000 * 109.47581 * 299.99581 * 9 8 6 35 35 H 1.09004 * 109.49909 * 294.50765 * 12 10 9 36 36 H 1.08991 * 109.50480 * 54.61373 * 12 10 9 37 37 H 1.09000 * 109.45913 * 58.65266 * 13 12 10 38 38 H 1.08996 * 109.45992 * 178.61497 * 13 12 10 39 39 H 1.08995 * 109.49765 * 301.41353 * 14 13 12 40 40 H 1.09001 * 109.52050 * 181.33543 * 14 13 12 41 41 H 1.09004 * 109.58734 * 185.57557 * 15 14 13 42 42 H 1.09000 * 109.70562 * 65.22280 * 15 14 13 43 43 H 0.97001 * 120.00366 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0206 -0.6939 1.2019 5 6 2.4120 -1.2474 2.1605 6 6 2.8893 -1.9225 3.3297 7 8 2.7012 -3.1167 3.4617 8 7 3.5469 -1.2343 4.2838 9 6 4.0357 -1.9251 5.4797 10 6 4.7414 -0.9225 6.3952 11 1 4.0431 -0.1371 6.6838 12 6 5.2518 -1.6418 7.6476 13 6 6.0724 -0.6650 8.4932 14 6 7.2806 -0.1812 7.6879 15 6 6.7931 0.5546 6.4358 16 7 5.8863 -0.3294 5.6909 17 6 6.1038 -0.5949 4.3652 18 1 5.8197 -1.5516 3.9525 19 6 6.6893 0.3656 3.5519 20 7 6.7744 1.6129 3.9631 21 14 7.3567 -0.1123 1.8738 22 1 6.2863 0.0354 0.8551 23 1 8.4976 0.7718 1.5247 24 1 7.8165 -1.5239 1.9077 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 3.6973 -0.2818 4.1783 33 1 4.7377 -2.7059 5.1870 34 1 3.1951 -2.3726 6.0100 35 1 4.4045 -2.0039 8.2300 36 1 5.8784 -2.4838 7.3538 37 1 5.4522 0.1888 8.7660 38 1 6.4163 -1.1675 9.3972 39 1 7.8880 -1.0370 7.3936 40 1 7.8778 0.4960 8.2985 41 1 7.6464 0.8146 5.8093 42 1 6.2629 1.4617 6.7257 43 1 7.1833 2.2842 3.3946 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661861735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:03 Heat of formation + Delta-G solvation = 0.901101 kcal Electronic energy + Delta-G solvation = -22194.518315 eV Core-core repulsion = 19047.346231 eV Total energy + Delta-G solvation = -3147.172083 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.84257 -39.31649 -37.33713 -35.79332 -34.91687 -33.21316 -32.13782 -31.66876 -28.08520 -27.89924 -26.79336 -24.60244 -23.80135 -22.55356 -22.09401 -20.77771 -19.72368 -18.17709 -17.40515 -17.24345 -16.91072 -16.24932 -15.82959 -15.58622 -15.44424 -15.09616 -14.85436 -14.57988 -14.42266 -14.08124 -13.66786 -13.51219 -13.12113 -13.00608 -12.85356 -12.84582 -12.60530 -12.44235 -12.38051 -12.34228 -12.06835 -11.81945 -11.60906 -11.52493 -11.30284 -11.19478 -11.11159 -11.00629 -10.55186 -9.98590 -8.57013 -7.86292 -5.32761 0.52922 1.26292 1.36778 1.41290 1.48117 2.19630 2.46597 2.51369 3.21966 3.30325 3.57266 3.95649 4.01928 4.13783 4.15426 4.22412 4.26623 4.41579 4.45253 4.54467 4.63481 4.73499 4.76436 4.85993 4.89914 4.92744 4.99665 5.07521 5.13591 5.22673 5.28202 5.29362 5.32578 5.33489 5.46278 5.50050 5.61666 5.72992 5.83051 6.20825 6.41978 6.51100 7.10133 7.17825 7.86396 8.39693 9.17939 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015377 B = 0.005913 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.507239 B = 4734.215889 C = 5795.315740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.005 3.995 3 C -0.145 4.145 4 C -0.059 4.059 5 C -0.269 4.269 6 C 0.623 3.377 7 O -0.582 6.582 8 N -0.677 5.677 9 C 0.137 3.863 10 C 0.159 3.841 11 H 0.034 0.966 12 C -0.121 4.121 13 C -0.102 4.102 14 C -0.135 4.135 15 C 0.179 3.821 16 N -0.601 5.601 17 C -0.239 4.239 18 H 0.057 0.943 19 C -0.030 4.030 20 N -0.921 5.921 21 Si 0.933 3.067 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.284 1.284 25 H 0.056 0.944 26 H 0.098 0.902 27 H 0.059 0.941 28 H 0.118 0.882 29 H 0.041 0.959 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.413 0.587 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.045 0.955 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.002 0.998 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.890 0.053 -0.810 8.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.013 4.013 3 C -0.202 4.202 4 C -0.062 4.062 5 C -0.272 4.272 6 C 0.410 3.590 7 O -0.465 6.465 8 N -0.325 5.325 9 C 0.013 3.987 10 C 0.053 3.947 11 H 0.052 0.948 12 C -0.161 4.161 13 C -0.140 4.140 14 C -0.174 4.174 15 C 0.054 3.946 16 N -0.326 5.326 17 C -0.370 4.370 18 H 0.075 0.925 19 C -0.227 4.227 20 N -0.566 5.566 21 Si 0.762 3.238 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.210 1.210 25 H 0.076 0.924 26 H 0.117 0.883 27 H 0.078 0.922 28 H 0.136 0.864 29 H 0.061 0.939 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.250 0.750 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.020 0.980 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.925 -0.629 -0.738 8.978 hybrid contribution 0.979 0.309 -1.022 1.449 sum -7.947 -0.319 -1.760 8.146 Atomic orbital electron populations 1.21827 0.90791 1.03005 1.03967 1.18873 0.97734 0.95256 0.89454 1.21862 1.00803 0.93571 1.04008 1.23580 0.93242 0.95043 0.94337 1.20925 1.05559 1.02621 0.98102 1.14919 0.78014 0.85129 0.80913 1.90737 1.60742 1.15364 1.79701 1.45924 1.53331 1.13527 1.19695 1.21428 0.97508 0.95051 0.84689 1.20913 0.88753 0.93240 0.91795 0.94815 1.21891 1.00209 0.98174 0.95791 1.21346 0.96300 0.98722 0.97616 1.22048 0.97978 0.99941 0.97463 1.20563 0.92984 0.90276 0.90805 1.44251 1.26217 1.55561 1.06580 1.19142 1.36063 0.96304 0.85493 0.92528 1.25481 1.02850 0.94885 0.99481 1.70104 1.48079 1.00598 1.37847 0.85811 0.78145 0.77186 0.82621 1.21255 1.21583 1.21029 0.92445 0.88300 0.92203 0.86385 0.93933 0.88077 0.92433 0.74986 0.93062 0.89979 0.89718 0.92666 0.92375 0.90587 0.93566 0.91653 0.93498 0.98004 0.94179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.15 71.98 0.66 -1.62 16 2 C 0.00 0.10 3.30 -12.60 -0.04 0.06 16 3 C -0.15 -3.04 9.15 71.98 0.66 -2.38 16 4 C -0.06 -1.94 12.56 31.12 0.39 -1.55 16 5 C -0.27 -10.63 13.61 30.01 0.41 -10.22 16 6 C 0.62 26.92 7.65 85.49 0.65 27.58 16 7 O -0.58 -27.74 17.08 -4.08 -0.07 -27.81 16 8 N -0.68 -28.02 3.88 -470.73 -1.83 -29.84 16 9 C 0.14 5.22 4.43 86.38 0.38 5.61 16 10 C 0.16 6.01 3.00 44.98 0.13 6.15 16 11 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 12 C -0.12 -3.73 5.37 30.67 0.16 -3.57 16 13 C -0.10 -3.01 5.88 30.62 0.18 -2.83 16 14 C -0.14 -4.78 6.08 30.67 0.19 -4.59 16 15 C 0.18 8.11 5.26 86.36 0.45 8.57 16 16 N -0.60 -27.75 2.97 -675.23 -2.00 -29.76 16 17 C -0.24 -12.33 6.98 84.03 0.59 -11.74 16 18 H 0.06 3.04 5.91 -2.91 -0.02 3.02 16 19 C -0.03 -1.61 4.95 84.86 0.42 -1.19 16 20 N -0.92 -51.30 11.31 21.65 0.24 -51.05 16 21 Si 0.93 44.76 29.58 68.60 2.03 46.79 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.41 17.99 7.40 -92.70 -0.69 17.31 16 33 H 0.05 2.16 7.39 -2.39 -0.02 2.14 16 34 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.05 2.44 6.26 -2.38 -0.01 2.43 16 42 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 Total: -1.00 -64.61 349.06 3.92 -60.69 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.30 Total: 22.70 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 5.24 Total: 8.28 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -3.59 Total: -110.65 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.07 Total: -27.81 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -64.61 3.92 -60.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661861735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.595 kcal (2) G-P(sol) polarization free energy of solvation -64.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds