Wall clock time and date at job start Tue Mar 31 2020 00:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46979 * 2 1 4 4 C 1.47199 * 109.47408 * 120.00248 * 2 1 3 5 5 C 2.64590 * 109.47176 * 120.00122 * 2 1 3 6 6 C 4.07798 * 109.47212 * 120.00191 * 2 1 3 7 7 O 1.21621 * 119.99713 * 220.36789 * 6 5 4 8 8 N 1.34778 * 120.00291 * 40.37460 * 6 5 4 9 9 C 1.46491 * 119.99958 * 179.97438 * 8 6 5 10 10 H 1.08991 * 109.47703 * 34.99644 * 9 8 6 11 11 C 1.53001 * 109.47219 * 274.99376 * 9 8 6 12 12 C 1.52996 * 109.47349 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47220 * 60.00418 * 12 11 9 14 14 C 1.53008 * 109.47074 * 300.00109 * 13 12 11 15 15 H 1.08999 * 109.47058 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47014 * 299.99808 * 14 13 12 17 17 C 1.36939 * 119.99933 * 275.27473 * 16 14 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 14 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 14 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47173 * 60.00435 * 21 19 17 23 23 H 1.48497 * 109.47172 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47132 * 300.00314 * 21 19 17 25 25 C 1.52999 * 109.46675 * 59.99923 * 14 13 12 26 26 H 1.08994 * 109.47445 * 299.99707 * 1 2 3 27 27 H 1.09006 * 109.47069 * 59.99979 * 1 2 3 28 28 H 1.08997 * 109.46996 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47400 * 240.00304 * 2 1 3 30 30 H 1.09004 * 109.46806 * 59.99940 * 3 2 1 31 31 H 1.08995 * 109.46907 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47150 * 300.00394 * 3 2 1 33 33 H 0.97000 * 119.99341 * 359.97438 * 8 6 5 34 34 H 1.09005 * 109.47539 * 300.00558 * 11 9 8 35 35 H 1.09006 * 109.47137 * 60.00177 * 11 9 8 36 36 H 1.08997 * 109.47425 * 180.02562 * 12 11 9 37 37 H 1.08996 * 109.47216 * 300.00101 * 12 11 9 38 38 H 1.08995 * 109.47753 * 179.97438 * 13 12 11 39 39 H 1.09005 * 109.47067 * 59.99557 * 13 12 11 40 40 H 0.97001 * 119.99790 * 94.99446 * 16 14 13 41 41 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 42 42 H 1.08991 * 109.47925 * 60.00288 * 25 14 13 43 43 H 1.09009 * 109.46506 * 180.02562 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0207 -0.6939 1.2018 5 6 2.4119 -1.2473 2.1603 6 6 2.8893 -1.9225 3.3296 7 8 3.4257 -1.2910 4.2199 8 7 2.7444 -3.2576 3.4433 9 6 3.2333 -3.9482 4.6391 10 1 3.0980 -3.3069 5.5099 11 6 4.7191 -4.2716 4.4697 12 6 5.2295 -4.9935 5.7183 13 6 4.4442 -6.2919 5.9137 14 6 2.9583 -5.9686 6.0831 15 1 2.3987 -6.8937 6.2218 16 7 2.7764 -5.1070 7.2539 17 6 2.6689 -5.6610 8.5016 18 1 2.7139 -6.7334 8.6219 19 6 2.5024 -4.8444 9.6116 20 7 2.4473 -3.5375 9.4648 21 14 2.3551 -5.6002 11.3135 22 1 3.5847 -6.3747 11.6193 23 1 2.1853 -4.5223 12.3208 24 1 1.1778 -6.5044 11.3534 25 6 2.4479 -5.2467 4.8344 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 2.3163 -3.7611 2.7332 34 1 4.8544 -4.9130 3.5988 35 1 5.2787 -3.3466 4.3301 36 1 6.2881 -5.2235 5.5979 37 1 5.0943 -4.3525 6.5894 38 1 4.8081 -6.8064 6.8030 39 1 4.5795 -6.9329 5.0425 40 1 2.7361 -4.1439 7.1457 41 1 2.3306 -2.9669 10.2405 42 1 2.5832 -5.8877 3.9633 43 1 1.3894 -5.0160 4.9553 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662757935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:11 Heat of formation + Delta-G solvation = 1.246859 kcal Electronic energy + Delta-G solvation = -21359.363493 eV Core-core repulsion = 18212.206403 eV Total energy + Delta-G solvation = -3147.157090 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.83318 -37.96163 -36.62279 -34.46137 -33.06759 -32.03510 -30.90583 -29.21209 -27.99811 -27.56286 -24.44373 -23.58368 -22.17967 -21.85808 -20.88004 -19.21451 -17.96974 -17.24894 -16.36598 -15.95364 -15.14328 -14.81253 -14.68497 -14.58435 -13.95509 -13.84004 -13.60183 -13.56277 -13.07752 -12.61350 -12.38630 -12.34224 -12.04550 -11.80072 -11.75336 -11.74157 -11.37192 -10.88080 -10.79837 -10.71535 -10.63436 -10.37758 -10.19790 -10.16189 -10.07478 -10.02216 -9.60066 -9.47993 -8.90469 -8.74427 -6.90323 -5.69805 -2.99286 1.60742 2.24584 3.13376 3.47464 3.51835 3.53312 3.60175 4.12587 4.60928 4.63794 4.73678 4.80937 5.09483 5.22605 5.24385 5.26894 5.43178 5.48296 5.51197 5.62829 5.64032 5.72327 5.76360 5.83375 5.85473 5.86903 5.92528 6.10778 6.13284 6.21707 6.38269 6.46249 6.63978 6.68365 6.82151 6.87797 7.04615 7.14093 7.15726 7.59443 7.74837 8.28717 8.48000 9.58855 10.16461 10.50649 11.52263 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022583 B = 0.003452 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.559293 B = 8109.926009 C = 8686.913098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.011 3.989 3 C -0.148 4.148 4 C -0.090 4.090 5 C -0.213 4.213 6 C 0.626 3.374 7 O -0.515 6.515 8 N -0.712 5.712 9 C 0.145 3.855 10 H 0.102 0.898 11 C -0.121 4.121 12 C -0.109 4.109 13 C -0.136 4.136 14 C 0.180 3.820 15 H 0.052 0.948 16 N -0.722 5.722 17 C -0.240 4.240 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.930 5.930 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.287 1.287 25 C -0.128 4.128 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.398 0.602 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.043 0.957 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.062 0.938 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.224 2.685 -21.733 21.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.007 4.007 3 C -0.205 4.205 4 C -0.092 4.092 5 C -0.216 4.216 6 C 0.411 3.589 7 O -0.391 6.391 8 N -0.361 5.361 9 C 0.042 3.958 10 H 0.120 0.880 11 C -0.160 4.160 12 C -0.148 4.148 13 C -0.176 4.176 14 C 0.069 3.931 15 H 0.070 0.930 16 N -0.364 5.364 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.578 5.578 21 Si 0.736 3.264 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.214 1.214 25 C -0.166 4.166 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.232 0.768 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.865 3.039 -20.886 21.124 hybrid contribution -0.221 -0.313 0.616 0.725 sum -1.086 2.727 -20.270 20.481 Atomic orbital electron populations 1.21844 0.92789 1.02847 1.02886 1.18473 0.96221 0.95244 0.90801 1.21861 1.01801 0.94013 1.02825 1.22574 0.94898 0.97287 0.94438 1.20950 1.03242 1.01425 0.95944 1.14763 0.79058 0.82021 0.83034 1.90913 1.42452 1.66183 1.39571 1.46031 1.60881 1.06497 1.22725 1.21159 0.93408 0.94042 0.87206 0.88009 1.21862 0.95286 1.00159 0.98675 1.21357 0.97834 0.97722 0.97851 1.22186 0.98925 0.96483 1.00007 1.20156 0.92899 0.93766 0.86292 0.93042 1.42513 1.87038 1.05460 1.01436 1.19173 1.42068 0.91739 0.84169 0.91275 1.24742 1.02984 0.95360 0.97794 1.69661 1.56709 1.02094 1.29333 0.86304 0.77777 0.77722 0.84565 1.21355 1.21787 1.21393 1.22085 0.99972 0.95291 0.99297 0.91863 0.91243 0.91930 0.88256 0.91842 0.91968 0.91307 0.76807 0.92674 0.92201 0.93206 0.90260 0.91951 0.93871 0.78017 0.93449 0.91947 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.15 37.16 0.34 -0.59 16 2 C 0.01 0.08 3.30 -93.41 -0.31 -0.23 16 3 C -0.15 -1.01 9.15 37.16 0.34 -0.67 16 4 C -0.09 -1.03 12.56 -37.12 -0.47 -1.50 16 5 C -0.21 -3.03 13.61 -38.83 -0.53 -3.56 16 6 C 0.63 10.56 7.62 -14.33 -0.11 10.45 16 7 O -0.51 -11.01 16.75 5.26 0.09 -10.92 16 8 N -0.71 -10.28 5.07 -56.25 -0.29 -10.57 16 9 C 0.15 2.44 2.28 -67.93 -0.16 2.28 16 10 H 0.10 2.17 5.94 -51.93 -0.31 1.86 16 11 C -0.12 -1.94 5.49 -26.73 -0.15 -2.09 16 12 C -0.11 -1.93 5.77 -26.74 -0.15 -2.08 16 13 C -0.14 -2.38 5.61 -26.73 -0.15 -2.53 16 14 C 0.18 3.45 3.10 -67.93 -0.21 3.24 16 15 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 16 N -0.72 -17.80 4.28 -53.42 -0.23 -18.03 16 17 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.59 13.06 55.49 0.72 -27.86 16 21 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 C -0.13 -2.03 5.07 -26.73 -0.14 -2.16 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.40 4.41 8.57 -40.82 -0.35 4.06 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.69 7.60 -51.93 -0.39 1.29 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.38 10.28 6.06 -40.82 -0.25 10.03 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -32.92 354.54 -8.50 -41.41 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -7.18 Total: 9.68 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -1.93 Total: -6.65 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.21 Total: -56.47 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.92 -8.50 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662757935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.660 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds