Wall clock time and date at job start Tue Mar 31 2020 00:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46979 * 2 1 4 4 C 1.47199 * 109.47408 * 120.00248 * 2 1 3 5 5 C 2.64590 * 109.47176 * 120.00122 * 2 1 3 6 6 C 4.07798 * 109.47212 * 120.00191 * 2 1 3 7 7 O 1.21621 * 119.99713 * 220.36789 * 6 5 4 8 8 N 1.34778 * 120.00291 * 40.37460 * 6 5 4 9 9 C 1.46491 * 119.99958 * 179.97438 * 8 6 5 10 10 H 1.08991 * 109.47703 * 34.99644 * 9 8 6 11 11 C 1.53001 * 109.47219 * 274.99376 * 9 8 6 12 12 C 1.52996 * 109.47349 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47220 * 60.00418 * 12 11 9 14 14 C 1.53008 * 109.47074 * 300.00109 * 13 12 11 15 15 H 1.08999 * 109.47058 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47014 * 299.99808 * 14 13 12 17 17 C 1.36939 * 119.99933 * 275.27473 * 16 14 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 14 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 14 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47173 * 60.00435 * 21 19 17 23 23 H 1.48497 * 109.47172 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47132 * 300.00314 * 21 19 17 25 25 C 1.52999 * 109.46675 * 59.99923 * 14 13 12 26 26 H 1.08994 * 109.47445 * 299.99707 * 1 2 3 27 27 H 1.09006 * 109.47069 * 59.99979 * 1 2 3 28 28 H 1.08997 * 109.46996 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47400 * 240.00304 * 2 1 3 30 30 H 1.09004 * 109.46806 * 59.99940 * 3 2 1 31 31 H 1.08995 * 109.46907 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47150 * 300.00394 * 3 2 1 33 33 H 0.97000 * 119.99341 * 359.97438 * 8 6 5 34 34 H 1.09005 * 109.47539 * 300.00558 * 11 9 8 35 35 H 1.09006 * 109.47137 * 60.00177 * 11 9 8 36 36 H 1.08997 * 109.47425 * 180.02562 * 12 11 9 37 37 H 1.08996 * 109.47216 * 300.00101 * 12 11 9 38 38 H 1.08995 * 109.47753 * 179.97438 * 13 12 11 39 39 H 1.09005 * 109.47067 * 59.99557 * 13 12 11 40 40 H 0.97001 * 119.99790 * 94.99446 * 16 14 13 41 41 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 42 42 H 1.08991 * 109.47925 * 60.00288 * 25 14 13 43 43 H 1.09009 * 109.46506 * 180.02562 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0207 -0.6939 1.2018 5 6 2.4119 -1.2473 2.1603 6 6 2.8893 -1.9225 3.3296 7 8 3.4257 -1.2910 4.2199 8 7 2.7444 -3.2576 3.4433 9 6 3.2333 -3.9482 4.6391 10 1 3.0980 -3.3069 5.5099 11 6 4.7191 -4.2716 4.4697 12 6 5.2295 -4.9935 5.7183 13 6 4.4442 -6.2919 5.9137 14 6 2.9583 -5.9686 6.0831 15 1 2.3987 -6.8937 6.2218 16 7 2.7764 -5.1070 7.2539 17 6 2.6689 -5.6610 8.5016 18 1 2.7139 -6.7334 8.6219 19 6 2.5024 -4.8444 9.6116 20 7 2.4473 -3.5375 9.4648 21 14 2.3551 -5.6002 11.3135 22 1 3.5847 -6.3747 11.6193 23 1 2.1853 -4.5223 12.3208 24 1 1.1778 -6.5044 11.3534 25 6 2.4479 -5.2467 4.8344 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 2.3163 -3.7611 2.7332 34 1 4.8544 -4.9130 3.5988 35 1 5.2787 -3.3466 4.3301 36 1 6.2881 -5.2235 5.5979 37 1 5.0943 -4.3525 6.5894 38 1 4.8081 -6.8064 6.8030 39 1 4.5795 -6.9329 5.0425 40 1 2.7361 -4.1439 7.1457 41 1 2.3306 -2.9669 10.2405 42 1 2.5832 -5.8877 3.9633 43 1 1.3894 -5.0160 4.9553 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662757935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:10 Heat of formation + Delta-G solvation = -20.332548 kcal Electronic energy + Delta-G solvation = -21360.299247 eV Core-core repulsion = 18212.206403 eV Total energy + Delta-G solvation = -3148.092843 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.20040 -39.43252 -37.33106 -36.07994 -34.79115 -33.08890 -32.64853 -30.64214 -29.66463 -28.06269 -25.78088 -25.38582 -23.32889 -23.16752 -22.14521 -20.57327 -19.36069 -19.20789 -17.51021 -17.10180 -16.54806 -16.37327 -16.01553 -15.53624 -15.41296 -15.30792 -15.21268 -14.79108 -14.41142 -13.84089 -13.47039 -13.43704 -13.11229 -12.95640 -12.87443 -12.78663 -12.61690 -12.49852 -12.34200 -12.20843 -12.18999 -11.81765 -11.78191 -11.58425 -11.35074 -11.28364 -11.20032 -11.04061 -10.82264 -10.15029 -8.95478 -7.89682 -5.17838 0.47285 1.22931 1.46141 1.49530 1.55522 1.97753 2.43559 2.58450 3.15843 3.43359 3.72743 3.88628 4.02624 4.06106 4.14064 4.16408 4.17629 4.34585 4.43350 4.47338 4.56685 4.68055 4.74339 4.78282 4.80101 4.93155 4.94951 5.00276 5.09108 5.10381 5.16502 5.29237 5.33008 5.34972 5.37881 5.42525 5.52595 5.61278 5.67470 6.16873 6.31770 6.39644 7.06402 7.37106 8.16643 8.37024 9.33704 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022583 B = 0.003452 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.559293 B = 8109.926009 C = 8686.913098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.006 3.994 3 C -0.148 4.148 4 C -0.041 4.041 5 C -0.273 4.273 6 C 0.625 3.375 7 O -0.576 6.576 8 N -0.692 5.692 9 C 0.150 3.850 10 H 0.047 0.953 11 C -0.111 4.111 12 C -0.106 4.106 13 C -0.126 4.126 14 C 0.168 3.832 15 H 0.057 0.943 16 N -0.736 5.736 17 C -0.232 4.232 18 H 0.079 0.921 19 C -0.083 4.083 20 N -0.974 5.974 21 Si 0.971 3.029 22 H -0.278 1.278 23 H -0.302 1.302 24 H -0.276 1.276 25 C -0.115 4.115 26 H 0.048 0.952 27 H 0.096 0.904 28 H 0.063 0.937 29 H 0.131 0.869 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.419 0.581 34 H 0.094 0.906 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.028 0.972 38 H 0.042 0.958 39 H 0.088 0.912 40 H 0.370 0.630 41 H 0.247 0.753 42 H 0.112 0.888 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.686 0.917 -25.242 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.012 4.012 3 C -0.206 4.206 4 C -0.043 4.043 5 C -0.276 4.276 6 C 0.413 3.587 7 O -0.457 6.457 8 N -0.342 5.342 9 C 0.046 3.954 10 H 0.065 0.935 11 C -0.149 4.149 12 C -0.144 4.144 13 C -0.166 4.166 14 C 0.059 3.941 15 H 0.075 0.925 16 N -0.377 5.377 17 C -0.364 4.364 18 H 0.097 0.903 19 C -0.274 4.274 20 N -0.625 5.625 21 Si 0.801 3.199 22 H -0.205 1.205 23 H -0.228 1.228 24 H -0.202 1.202 25 C -0.153 4.153 26 H 0.067 0.933 27 H 0.115 0.885 28 H 0.082 0.918 29 H 0.149 0.851 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.256 0.744 34 H 0.113 0.887 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.106 0.894 40 H 0.202 0.798 41 H 0.056 0.944 42 H 0.130 0.870 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.342 1.182 -24.465 24.531 hybrid contribution -0.098 0.237 1.536 1.557 sum -1.440 1.419 -22.930 23.019 Atomic orbital electron populations 1.21868 0.91571 1.03213 1.03586 1.18905 0.97082 0.95428 0.89746 1.21896 1.01516 0.93554 1.03594 1.23529 0.91938 0.94879 0.93987 1.20560 1.06194 1.03999 0.96818 1.15085 0.78053 0.82448 0.83130 1.90876 1.45410 1.67440 1.41968 1.45770 1.60115 1.05959 1.22383 1.20893 0.94608 0.93652 0.86228 0.93523 1.21772 0.94018 0.99938 0.99215 1.21290 0.99380 0.97154 0.96614 1.22065 0.96905 0.96594 1.01057 1.20503 0.94421 0.93380 0.85779 0.92494 1.42768 1.87032 1.05426 1.02443 1.19630 1.39187 0.92164 0.85408 0.90265 1.25567 1.04409 0.95755 1.01702 1.69860 1.59430 1.03594 1.29646 0.85240 0.78180 0.76652 0.79876 1.20467 1.22826 1.20226 1.21972 0.98956 0.94942 0.99431 0.93271 0.88516 0.91771 0.85104 0.93295 0.92511 0.88394 0.74370 0.88716 0.93925 0.91155 0.95332 0.93950 0.89403 0.79753 0.94429 0.87003 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.15 71.98 0.66 -0.75 16 2 C 0.01 0.07 3.30 -12.60 -0.04 0.03 16 3 C -0.15 -1.65 9.15 71.98 0.66 -0.99 16 4 C -0.04 -0.88 12.56 31.13 0.39 -0.49 16 5 C -0.27 -7.81 13.61 30.02 0.41 -7.40 16 6 C 0.62 21.99 7.62 85.49 0.65 22.64 16 7 O -0.58 -26.58 16.75 -4.10 -0.07 -26.65 16 8 N -0.69 -19.83 5.07 -450.12 -2.28 -22.11 16 9 C 0.15 5.10 2.28 44.99 0.10 5.20 16 10 H 0.05 2.15 5.94 -2.39 -0.01 2.13 16 11 C -0.11 -3.46 5.49 30.59 0.17 -3.29 16 12 C -0.11 -3.71 5.77 30.59 0.18 -3.53 16 13 C -0.13 -4.18 5.61 30.60 0.17 -4.01 16 14 C 0.17 6.28 3.10 44.99 0.14 6.42 16 15 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 16 N -0.74 -37.40 4.28 -322.93 -1.38 -38.78 16 17 C -0.23 -13.00 9.93 84.03 0.83 -12.17 16 18 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 19 C -0.08 -4.91 5.50 84.86 0.47 -4.44 16 20 N -0.97 -62.93 13.06 21.65 0.28 -62.65 16 21 Si 0.97 47.70 29.55 68.60 2.03 49.73 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 C -0.11 -3.43 5.07 30.60 0.16 -3.27 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.13 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.42 8.42 8.57 -92.71 -0.79 7.62 16 34 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.03 1.27 7.60 -2.39 -0.02 1.25 16 38 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.09 2.18 8.14 -2.38 -0.02 2.17 16 40 H 0.37 21.01 6.06 -92.71 -0.56 20.45 16 41 H 0.25 15.64 8.31 -92.71 -0.77 14.87 16 42 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -78.10 354.54 3.17 -74.93 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: -0.35 Total: 31.59 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 4.94 Total: -6.06 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -3.38 Total: -123.54 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.07 Total: -26.65 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -78.10 3.17 -74.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662757935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.597 kcal (2) G-P(sol) polarization free energy of solvation -78.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds