Wall clock time and date at job start Tue Mar 31 2020 00:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46637 * 2 1 4 4 C 1.47196 * 109.47016 * 119.99417 * 2 1 3 5 5 C 2.64595 * 109.47122 * 119.99616 * 2 1 3 6 6 C 4.07798 * 109.47205 * 119.99694 * 2 1 3 7 7 O 1.21616 * 120.00158 * 165.65654 * 6 5 4 8 8 N 1.34781 * 120.00155 * 345.65299 * 6 5 4 9 9 C 1.46499 * 119.99874 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47391 * 325.00213 * 9 8 6 11 11 C 1.53000 * 109.46840 * 85.00543 * 9 8 6 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46963 * 299.99499 * 12 11 9 14 14 C 1.52997 * 109.47092 * 60.00194 * 13 12 11 15 15 H 1.09002 * 109.47497 * 59.99850 * 14 13 12 16 16 N 1.46500 * 109.47204 * 180.02562 * 14 13 12 17 17 C 1.36943 * 119.99968 * 274.99638 * 16 14 13 18 18 H 1.07999 * 119.99880 * 0.02562 * 17 16 14 19 19 C 1.38806 * 119.99716 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00355 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99586 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47217 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47166 * 120.00245 * 21 19 17 24 24 H 1.48505 * 109.46828 * 239.99876 * 21 19 17 25 25 C 1.53002 * 109.46799 * 205.00309 * 9 8 6 26 26 H 1.09001 * 109.47101 * 299.99827 * 1 2 3 27 27 H 1.09000 * 109.47354 * 60.00128 * 1 2 3 28 28 H 1.09002 * 109.47293 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46920 * 240.00049 * 2 1 3 30 30 H 1.09001 * 109.47234 * 60.00254 * 3 2 1 31 31 H 1.09004 * 109.46567 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.46873 * 299.99866 * 3 2 1 33 33 H 0.97002 * 119.99716 * 0.02562 * 8 6 5 34 34 H 1.09001 * 109.47194 * 299.99493 * 11 9 8 35 35 H 1.08992 * 109.47399 * 59.99666 * 11 9 8 36 36 H 1.09000 * 109.47437 * 180.02562 * 12 11 9 37 37 H 1.09002 * 109.47508 * 59.99571 * 12 11 9 38 38 H 1.09002 * 109.47067 * 300.00341 * 13 12 11 39 39 H 1.09000 * 109.47312 * 180.02562 * 13 12 11 40 40 H 0.96995 * 120.00272 * 95.00347 * 16 14 13 41 41 H 0.97006 * 119.99644 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.47075 * 299.99543 * 25 9 8 43 43 H 1.08996 * 109.47407 * 60.00500 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0206 -0.6938 1.2019 5 6 2.4120 -1.2472 2.1605 6 6 2.8894 -1.9222 3.3297 7 8 4.0482 -1.7936 3.6756 8 7 2.0544 -2.7000 4.0470 9 6 2.5430 -3.3910 5.2428 10 1 3.5782 -3.6956 5.0890 11 6 2.4619 -2.4484 6.4453 12 6 2.9728 -3.1699 7.6941 13 6 2.1114 -4.4068 7.9567 14 6 2.1924 -5.3493 6.7543 15 1 3.2277 -5.6536 6.6001 16 7 1.3671 -6.5334 7.0054 17 6 1.8835 -7.5923 7.7037 18 1 2.8989 -7.5543 8.0695 19 6 1.1017 -8.7144 7.9412 20 7 -0.1360 -8.7605 7.4958 21 14 1.8058 -10.1585 8.8943 22 1 3.2076 -9.8594 9.2821 23 1 0.9925 -10.3896 10.1151 24 1 1.7770 -11.3748 8.0428 25 6 1.6811 -4.6277 5.5051 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5138 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6765 1.9563 -0.8899 33 1 1.1302 -2.8029 3.7709 34 1 3.0759 -1.5674 6.2584 35 1 1.4268 -2.1439 6.5991 36 1 2.9146 -2.4986 8.5509 37 1 4.0081 -3.4741 7.5400 38 1 1.0761 -4.1025 8.1108 39 1 2.4750 -4.9205 8.8466 40 1 0.4551 -6.5675 6.6771 41 1 -0.6822 -9.5449 7.6615 42 1 0.6459 -4.3231 5.6590 43 1 1.7389 -5.2992 4.6485 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662757936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:14 Heat of formation + Delta-G solvation = -3.976471 kcal Electronic energy + Delta-G solvation = -20900.374029 eV Core-core repulsion = 17752.990439 eV Total energy + Delta-G solvation = -3147.383591 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.97765 -37.95712 -36.72091 -34.70533 -33.40111 -32.15469 -31.12689 -29.36262 -27.79794 -27.64441 -24.57243 -23.67913 -22.26048 -21.77466 -20.60958 -19.77800 -18.55893 -17.02641 -16.41043 -16.31165 -15.26866 -15.11248 -14.76399 -14.40503 -14.03848 -13.93909 -13.80002 -13.54162 -13.17738 -12.75139 -12.69913 -12.42103 -12.18908 -12.09537 -11.85916 -11.85038 -11.00487 -10.97601 -10.89720 -10.77815 -10.72811 -10.47991 -10.36060 -10.32552 -10.21216 -10.12516 -9.76916 -9.63125 -9.04541 -8.87505 -6.96536 -5.77343 -3.05915 1.45308 2.11058 2.99434 3.43266 3.43793 3.49450 3.51310 3.98175 4.52255 4.57738 4.64783 4.72347 4.94430 5.05943 5.15071 5.16310 5.31592 5.34404 5.41006 5.49622 5.54181 5.60980 5.67723 5.73489 5.75012 5.75879 5.87009 5.96383 6.01493 6.13771 6.27283 6.31588 6.50264 6.52534 6.60373 6.72434 6.96322 7.03395 7.12202 7.41396 7.71327 8.07917 8.41437 9.52742 10.09857 10.44595 11.45479 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026980 B = 0.002915 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.567512 B = 9604.416053 C =10193.656297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.008 3.992 3 C -0.147 4.147 4 C -0.081 4.081 5 C -0.219 4.219 6 C 0.631 3.369 7 O -0.526 6.526 8 N -0.710 5.710 9 C 0.149 3.851 10 H 0.091 0.909 11 C -0.125 4.125 12 C -0.114 4.114 13 C -0.137 4.137 14 C 0.184 3.816 15 H 0.049 0.951 16 N -0.724 5.724 17 C -0.236 4.236 18 H 0.071 0.929 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.130 4.130 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.403 0.597 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.065 0.935 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.772 19.325 -13.149 23.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.010 4.010 3 C -0.204 4.204 4 C -0.084 4.084 5 C -0.222 4.222 6 C 0.417 3.583 7 O -0.403 6.403 8 N -0.359 5.359 9 C 0.045 3.955 10 H 0.109 0.891 11 C -0.164 4.164 12 C -0.153 4.153 13 C -0.177 4.177 14 C 0.073 3.927 15 H 0.067 0.933 16 N -0.365 5.365 17 C -0.367 4.367 18 H 0.089 0.911 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.169 4.169 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.237 0.763 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.713 19.245 -12.777 23.164 hybrid contribution -0.496 -0.914 0.331 1.091 sum 1.218 18.331 -12.446 22.191 Atomic orbital electron populations 1.21855 0.92736 1.02949 1.02863 1.18504 0.96285 0.95260 0.90927 1.21851 1.01861 0.93884 1.02805 1.22611 0.97131 0.94705 0.93913 1.20849 1.01851 1.02493 0.97043 1.14722 0.85045 0.78490 0.80046 1.90856 1.17111 1.62689 1.69678 1.46041 1.14025 1.47979 1.27874 1.21131 0.99846 0.91803 0.82751 0.89092 1.21897 1.01482 0.98249 0.94727 1.21488 1.00018 0.97503 0.96303 1.22296 0.99136 0.95236 1.01079 1.20108 0.95244 0.87118 0.90219 0.93261 1.42411 1.13867 1.14074 1.66128 1.19294 0.97075 0.93831 1.26488 0.91062 1.24740 0.96181 0.98521 1.01633 1.69672 1.07673 1.29802 1.51102 0.86131 0.78049 0.82800 0.79326 1.20523 1.21907 1.21908 1.22115 0.99244 0.95110 1.00386 0.91945 0.91192 0.91822 0.88058 0.91978 0.91901 0.91191 0.76296 0.92068 0.91929 0.92411 0.92076 0.92633 0.91827 0.78334 0.93603 0.91585 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.15 37.16 0.34 -0.44 16 2 C 0.01 0.05 3.30 -93.40 -0.31 -0.25 16 3 C -0.15 -0.82 9.15 37.16 0.34 -0.48 16 4 C -0.08 -0.84 12.56 -37.12 -0.47 -1.30 16 5 C -0.22 -2.78 13.61 -38.84 -0.53 -3.31 16 6 C 0.63 9.21 7.61 -14.33 -0.11 9.10 16 7 O -0.53 -9.51 16.75 5.26 0.09 -9.42 16 8 N -0.71 -9.05 5.07 -56.24 -0.29 -9.33 16 9 C 0.15 2.12 2.45 -67.93 -0.17 1.96 16 10 H 0.09 1.45 7.58 -51.93 -0.39 1.05 16 11 C -0.12 -1.71 5.49 -26.73 -0.15 -1.86 16 12 C -0.11 -1.65 5.92 -26.73 -0.16 -1.80 16 13 C -0.14 -2.40 5.50 -26.73 -0.15 -2.55 16 14 C 0.18 3.55 2.77 -67.90 -0.19 3.36 16 15 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 16 N -0.72 -17.78 5.12 -53.40 -0.27 -18.06 16 17 C -0.24 -6.48 9.93 -15.06 -0.15 -6.62 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 21 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 C -0.13 -2.05 4.86 -26.70 -0.13 -2.18 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.40 4.19 8.57 -40.82 -0.35 3.84 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 41 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 358.97 15.07 5.41 5.41 Total: -1.00 -32.13 358.97 -8.64 -40.77 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -7.37 Total: 7.48 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.91 Total: -6.91 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.17 Total: -54.68 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.13 -8.64 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662757936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.797 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds