Wall clock time and date at job start Tue Mar 31 2020 00:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46637 * 2 1 4 4 C 1.47196 * 109.47016 * 119.99417 * 2 1 3 5 5 C 2.64595 * 109.47122 * 119.99616 * 2 1 3 6 6 C 4.07798 * 109.47205 * 119.99694 * 2 1 3 7 7 O 1.21616 * 120.00158 * 165.65654 * 6 5 4 8 8 N 1.34781 * 120.00155 * 345.65299 * 6 5 4 9 9 C 1.46499 * 119.99874 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47391 * 325.00213 * 9 8 6 11 11 C 1.53000 * 109.46840 * 85.00543 * 9 8 6 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46963 * 299.99499 * 12 11 9 14 14 C 1.52997 * 109.47092 * 60.00194 * 13 12 11 15 15 H 1.09002 * 109.47497 * 59.99850 * 14 13 12 16 16 N 1.46500 * 109.47204 * 180.02562 * 14 13 12 17 17 C 1.36943 * 119.99968 * 274.99638 * 16 14 13 18 18 H 1.07999 * 119.99880 * 0.02562 * 17 16 14 19 19 C 1.38806 * 119.99716 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00355 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99586 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47217 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47166 * 120.00245 * 21 19 17 24 24 H 1.48505 * 109.46828 * 239.99876 * 21 19 17 25 25 C 1.53002 * 109.46799 * 205.00309 * 9 8 6 26 26 H 1.09001 * 109.47101 * 299.99827 * 1 2 3 27 27 H 1.09000 * 109.47354 * 60.00128 * 1 2 3 28 28 H 1.09002 * 109.47293 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46920 * 240.00049 * 2 1 3 30 30 H 1.09001 * 109.47234 * 60.00254 * 3 2 1 31 31 H 1.09004 * 109.46567 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.46873 * 299.99866 * 3 2 1 33 33 H 0.97002 * 119.99716 * 0.02562 * 8 6 5 34 34 H 1.09001 * 109.47194 * 299.99493 * 11 9 8 35 35 H 1.08992 * 109.47399 * 59.99666 * 11 9 8 36 36 H 1.09000 * 109.47437 * 180.02562 * 12 11 9 37 37 H 1.09002 * 109.47508 * 59.99571 * 12 11 9 38 38 H 1.09002 * 109.47067 * 300.00341 * 13 12 11 39 39 H 1.09000 * 109.47312 * 180.02562 * 13 12 11 40 40 H 0.96995 * 120.00272 * 95.00347 * 16 14 13 41 41 H 0.97006 * 119.99644 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.47075 * 299.99543 * 25 9 8 43 43 H 1.08996 * 109.47407 * 60.00500 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0206 -0.6938 1.2019 5 6 2.4120 -1.2472 2.1605 6 6 2.8894 -1.9222 3.3297 7 8 4.0482 -1.7936 3.6756 8 7 2.0544 -2.7000 4.0470 9 6 2.5430 -3.3910 5.2428 10 1 3.5782 -3.6956 5.0890 11 6 2.4619 -2.4484 6.4453 12 6 2.9728 -3.1699 7.6941 13 6 2.1114 -4.4068 7.9567 14 6 2.1924 -5.3493 6.7543 15 1 3.2277 -5.6536 6.6001 16 7 1.3671 -6.5334 7.0054 17 6 1.8835 -7.5923 7.7037 18 1 2.8989 -7.5543 8.0695 19 6 1.1017 -8.7144 7.9412 20 7 -0.1360 -8.7605 7.4958 21 14 1.8058 -10.1585 8.8943 22 1 3.2076 -9.8594 9.2821 23 1 0.9925 -10.3896 10.1151 24 1 1.7770 -11.3748 8.0428 25 6 1.6811 -4.6277 5.5051 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5138 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6765 1.9563 -0.8899 33 1 1.1302 -2.8029 3.7709 34 1 3.0759 -1.5674 6.2584 35 1 1.4268 -2.1439 6.5991 36 1 2.9146 -2.4986 8.5509 37 1 4.0081 -3.4741 7.5400 38 1 1.0761 -4.1025 8.1108 39 1 2.4750 -4.9205 8.8466 40 1 0.4551 -6.5675 6.6771 41 1 -0.6822 -9.5449 7.6615 42 1 0.6459 -4.3231 5.6590 43 1 1.7389 -5.2992 4.6485 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662757936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:13 Heat of formation + Delta-G solvation = -23.946964 kcal Electronic energy + Delta-G solvation = -20901.240015 eV Core-core repulsion = 17752.990439 eV Total energy + Delta-G solvation = -3148.249576 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.17020 -39.31884 -37.33017 -36.28982 -34.91531 -33.13671 -32.82430 -30.68549 -29.42487 -28.05062 -25.80850 -25.37482 -23.30933 -22.92063 -21.87506 -21.09506 -19.81073 -18.94497 -17.63078 -17.11873 -16.55367 -16.28080 -16.08599 -15.51034 -15.42296 -15.20560 -15.04778 -14.86754 -14.44692 -14.24838 -13.64894 -13.44148 -13.09606 -12.95316 -12.91559 -12.84657 -12.43291 -12.34975 -12.28635 -12.16643 -12.03495 -11.98655 -11.80676 -11.68433 -11.42743 -11.28250 -11.24724 -11.16370 -10.88647 -10.19642 -9.00095 -7.94139 -5.21908 0.46470 1.21452 1.47471 1.47767 1.57715 1.98320 2.42942 2.56420 3.13161 3.39534 3.59720 3.83393 4.01459 4.04708 4.09068 4.16993 4.25788 4.29254 4.39441 4.48013 4.52171 4.56275 4.65004 4.75157 4.79651 4.93876 4.95910 4.98987 5.07610 5.11861 5.15267 5.20988 5.32527 5.33494 5.36088 5.36711 5.50105 5.53069 5.64871 6.17131 6.28694 6.35797 6.99718 7.35144 8.10522 8.34281 9.29502 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026980 B = 0.002915 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.567512 B = 9604.416053 C =10193.656297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.003 3.997 3 C -0.146 4.146 4 C -0.042 4.042 5 C -0.274 4.274 6 C 0.633 3.367 7 O -0.569 6.569 8 N -0.697 5.697 9 C 0.157 3.843 10 H 0.074 0.926 11 C -0.118 4.118 12 C -0.106 4.106 13 C -0.127 4.127 14 C 0.177 3.823 15 H 0.038 0.962 16 N -0.736 5.736 17 C -0.235 4.235 18 H 0.073 0.927 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.968 3.032 22 H -0.268 1.268 23 H -0.294 1.294 24 H -0.294 1.294 25 C -0.115 4.115 26 H 0.057 0.943 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.122 0.878 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.416 0.584 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.374 0.626 41 H 0.250 0.750 42 H 0.077 0.923 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.551 20.960 -14.230 25.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.015 4.015 3 C -0.203 4.203 4 C -0.045 4.045 5 C -0.277 4.277 6 C 0.421 3.579 7 O -0.450 6.450 8 N -0.347 5.347 9 C 0.053 3.947 10 H 0.092 0.908 11 C -0.156 4.156 12 C -0.144 4.144 13 C -0.167 4.167 14 C 0.068 3.932 15 H 0.056 0.944 16 N -0.375 5.375 17 C -0.366 4.366 18 H 0.091 0.909 19 C -0.268 4.268 20 N -0.620 5.620 21 Si 0.798 3.202 22 H -0.192 1.192 23 H -0.221 1.221 24 H -0.222 1.222 25 C -0.154 4.154 26 H 0.076 0.924 27 H 0.111 0.889 28 H 0.079 0.921 29 H 0.139 0.861 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.252 0.748 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.206 0.794 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.498 20.914 -13.864 25.136 hybrid contribution -0.428 -1.331 0.565 1.508 sum 1.070 19.583 -13.298 23.695 Atomic orbital electron populations 1.21866 0.91425 1.03075 1.03820 1.18884 0.97278 0.95640 0.89709 1.21870 1.01421 0.93178 1.03821 1.23492 0.94910 0.92611 0.93448 1.20625 1.04377 1.04687 0.97962 1.14900 0.84465 0.78135 0.80369 1.90821 1.18856 1.64356 1.70980 1.45853 1.14519 1.47175 1.27140 1.20898 0.98533 0.91483 0.83810 0.90761 1.21833 1.02292 0.97769 0.93723 1.21415 0.99178 0.96341 0.97508 1.22102 0.99678 0.95899 0.99020 1.20315 0.93972 0.86273 0.92590 0.94389 1.42583 1.13912 1.15151 1.65893 1.19621 0.97012 0.94492 1.25522 0.90898 1.25501 0.96703 1.01213 1.03417 1.69811 1.08889 1.30357 1.52948 0.85138 0.77844 0.79499 0.77711 1.19236 1.22080 1.22152 1.21896 0.99946 0.95267 0.98277 0.92395 0.88905 0.92135 0.86058 0.92538 0.92649 0.88675 0.74759 0.91944 0.90571 0.90359 0.92167 0.92711 0.93805 0.79428 0.94088 0.90449 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.15 71.98 0.66 -0.46 16 2 C 0.00 0.03 3.30 -12.60 -0.04 -0.01 16 3 C -0.15 -1.26 9.15 71.99 0.66 -0.60 16 4 C -0.04 -0.80 12.56 31.12 0.39 -0.41 16 5 C -0.27 -6.80 13.61 30.02 0.41 -6.39 16 6 C 0.63 18.50 7.61 85.49 0.65 19.16 16 7 O -0.57 -20.94 16.75 -4.08 -0.07 -21.01 16 8 N -0.70 -17.34 5.07 -450.10 -2.28 -19.62 16 9 C 0.16 4.40 2.45 44.99 0.11 4.51 16 10 H 0.07 2.38 7.58 -2.39 -0.02 2.36 16 11 C -0.12 -3.04 5.49 30.59 0.17 -2.87 16 12 C -0.11 -2.89 5.92 30.60 0.18 -2.71 16 13 C -0.13 -4.37 5.50 30.59 0.17 -4.20 16 14 C 0.18 6.87 2.77 45.01 0.12 6.99 16 15 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 16 N -0.74 -36.56 5.12 -322.86 -1.65 -38.21 16 17 C -0.23 -12.99 9.93 84.03 0.83 -12.15 16 18 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 19 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 20 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16 21 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 25 C -0.12 -3.59 4.86 30.61 0.15 -3.44 16 26 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.42 8.18 8.57 -92.71 -0.79 7.38 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.37 19.75 7.80 -92.71 -0.72 19.03 16 41 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 42 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -69.99 358.97 2.72 -67.27 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.52 Total: 28.40 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 4.93 Total: -6.50 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -3.65 Total: -116.56 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.07 Total: -21.01 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -69.99 2.72 -67.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662757936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.323 kcal (2) G-P(sol) polarization free energy of solvation -69.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds