Wall clock time and date at job start Tue Mar 31 2020 00:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.47101 * 120.00009 * 2 1 4 4 O 1.21618 * 120.00012 * 179.97438 * 3 2 1 5 5 N 1.34772 * 120.00178 * 359.97438 * 3 2 1 6 6 C 1.46499 * 120.00159 * 179.97438 * 5 3 2 7 7 H 1.08998 * 112.85181 * 336.19542 * 6 5 3 8 8 C 1.53779 * 113.61545 * 107.50336 * 6 5 3 9 9 C 1.53782 * 87.08303 * 89.11662 * 8 6 5 10 10 H 1.09002 * 113.68836 * 270.87969 * 9 8 6 11 11 C 1.52996 * 113.61754 * 139.98378 * 9 8 6 12 12 N 1.46498 * 109.47059 * 87.50116 * 11 9 8 13 13 C 1.36943 * 119.99752 * 179.72430 * 12 11 9 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31624 * 119.99698 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47294 * 90.00155 * 17 15 13 19 19 H 1.48499 * 109.47218 * 210.00015 * 17 15 13 20 20 H 1.48496 * 109.47166 * 329.99846 * 17 15 13 21 21 C 1.53781 * 113.61572 * 205.00134 * 6 5 3 22 22 C 1.32992 * 120.00439 * 179.97438 * 2 1 3 23 23 C 1.51409 * 136.32358 * 179.63574 * 22 2 1 24 24 C 1.53375 * 87.51663 * 206.05571 * 23 22 2 25 25 C 1.51416 * 136.31043 * 0.02562 * 22 2 1 26 26 H 1.09004 * 109.46761 * 90.00236 * 1 2 3 27 27 H 1.08998 * 109.47224 * 209.99945 * 1 2 3 28 28 H 1.08998 * 109.47350 * 330.00603 * 1 2 3 29 29 H 0.97002 * 119.99917 * 359.97438 * 5 3 2 30 30 H 1.09004 * 113.61558 * 334.56920 * 8 6 5 31 31 H 1.08990 * 113.61965 * 203.66414 * 8 6 5 32 32 H 1.09004 * 109.47066 * 327.50383 * 11 9 8 33 33 H 1.08994 * 109.46974 * 207.50531 * 11 9 8 34 34 H 0.97001 * 120.00384 * 0.02562 * 12 11 9 35 35 H 0.96999 * 119.99739 * 180.02562 * 16 15 13 36 36 H 1.08997 * 113.61825 * 156.33559 * 21 6 5 37 37 H 1.09005 * 113.61700 * 25.43102 * 21 6 5 38 38 H 1.09003 * 113.55581 * 320.63657 * 23 22 2 39 39 H 1.09000 * 113.56045 * 91.36732 * 23 22 2 40 40 H 1.09006 * 113.96743 * 220.28810 * 24 23 22 41 41 H 1.08998 * 113.71471 * 88.80946 * 24 23 22 42 42 H 1.09001 * 113.55715 * 268.62618 * 25 22 2 43 43 H 1.08993 * 113.56086 * 39.36130 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4587 1.2739 0.0005 5 7 1.5686 2.4411 -0.0005 6 6 2.3011 3.7098 0.0000 7 1 3.3083 3.6169 0.4062 8 6 2.2432 4.4552 -1.3438 9 6 0.9642 5.1322 -0.8236 10 1 0.0528 4.5781 -1.0486 11 6 0.8635 6.6147 -1.1882 12 7 0.2327 6.7524 -2.5032 13 6 0.0306 7.9964 -3.0387 14 1 0.3403 8.8758 -2.4936 15 6 -0.5724 8.1272 -4.2822 16 7 -0.9503 7.0554 -4.9463 17 14 -0.8475 9.8241 -5.0130 18 1 0.3357 10.2123 -5.8223 19 1 -2.0534 9.8005 -5.8792 20 1 -1.0433 10.8085 -3.9187 21 6 1.5028 4.8819 0.5949 22 6 2.1720 -1.1517 0.0005 23 6 3.6251 -1.5772 -0.0059 24 6 3.1708 -2.8820 -0.6718 25 6 1.8138 -2.6229 0.0007 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 0.5986 2.4411 -0.0013 30 1 2.0740 3.8010 -2.1991 31 1 3.0721 5.1464 -1.4958 32 1 1.8623 7.0504 -1.2170 33 1 0.2626 7.1326 -0.4408 34 1 -0.0458 5.9626 -2.9927 35 1 -1.3713 7.1468 -5.8154 36 1 2.1293 5.6897 0.9729 37 1 0.7358 4.5721 1.3049 38 1 4.2567 -0.9605 -0.6454 39 1 4.0420 -1.7188 0.9912 40 1 3.6835 -3.7699 -0.3015 41 1 3.1395 -2.8310 -1.7601 42 1 1.7336 -3.0516 0.9997 43 1 0.9604 -2.8636 -0.6332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675739630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:17 Heat of formation + Delta-G solvation = 26.494258 kcal Electronic energy + Delta-G solvation = -21103.724626 eV Core-core repulsion = 17957.662346 eV Total energy + Delta-G solvation = -3146.062281 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.35220 -39.11303 -37.85088 -34.52698 -33.77408 -32.42463 -30.73735 -26.89861 -26.76300 -25.75973 -25.46015 -23.94328 -22.92513 -21.45156 -20.85664 -19.04599 -18.29315 -17.03838 -16.61630 -16.08821 -15.79239 -15.13498 -14.86399 -14.61899 -14.19225 -13.88192 -13.68866 -13.37811 -13.18886 -12.75743 -12.70249 -12.62711 -12.33256 -12.21365 -12.04928 -11.83975 -11.59703 -11.21823 -11.01043 -10.81559 -10.71306 -10.42711 -10.30737 -10.07115 -9.80147 -9.70371 -9.57104 -9.12608 -8.87517 -8.79285 -6.87705 -5.73748 -3.01796 1.20231 3.10887 3.22768 3.45225 3.50111 3.51849 4.14373 4.25783 4.47199 4.60273 4.71520 4.77046 4.82860 4.87099 5.04817 5.15739 5.18817 5.28586 5.36824 5.39104 5.47568 5.54302 5.60548 5.64170 5.76800 5.82612 5.89490 5.97395 5.97785 6.05522 6.08369 6.15618 6.29184 6.36504 6.44549 6.49279 6.69911 6.82007 6.97454 7.55786 7.72431 8.25626 8.45636 9.56467 10.15997 10.50451 11.49312 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029443 B = 0.002884 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.766255 B = 9707.583111 C =10098.813995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.165 4.165 3 C 0.559 3.441 4 O -0.543 6.543 5 N -0.706 5.706 6 C 0.116 3.884 7 H 0.099 0.901 8 C -0.139 4.139 9 C -0.113 4.113 10 H 0.087 0.913 11 C 0.162 3.838 12 N -0.732 5.732 13 C -0.238 4.238 14 H 0.070 0.930 15 C -0.016 4.016 16 N -0.934 5.934 17 Si 0.907 3.093 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.138 4.138 22 C -0.072 4.072 23 C -0.103 4.103 24 C -0.142 4.142 25 C -0.106 4.106 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.401 0.599 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.020 0.980 33 H 0.018 0.982 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.685 -19.364 13.334 23.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.168 4.168 3 C 0.347 3.653 4 O -0.422 6.422 5 N -0.357 5.357 6 C 0.011 3.989 7 H 0.117 0.883 8 C -0.177 4.177 9 C -0.132 4.132 10 H 0.105 0.895 11 C 0.035 3.965 12 N -0.376 5.376 13 C -0.369 4.369 14 H 0.088 0.912 15 C -0.212 4.212 16 N -0.583 5.583 17 Si 0.738 3.262 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.177 4.177 22 C -0.074 4.074 23 C -0.139 4.139 24 C -0.180 4.180 25 C -0.142 4.142 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.237 0.763 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.117 0.883 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.546 -19.163 13.317 23.986 hybrid contribution -0.872 0.791 -0.754 1.398 sum 4.674 -18.372 12.564 22.742 Atomic orbital electron populations 1.20689 0.90436 1.02847 1.02752 1.20466 0.95893 0.91308 1.09141 1.18222 0.87206 0.83772 0.76067 1.90758 1.13535 1.87695 1.50163 1.45624 1.10200 1.05055 1.74782 1.21925 0.96542 0.82228 0.98215 0.88340 1.23409 0.98738 0.98942 0.96625 1.22756 0.97618 0.98199 0.94631 0.89477 1.20638 0.95732 0.91553 0.88594 1.42355 1.72168 1.06159 1.16918 1.19252 1.32223 0.85450 0.99986 0.91245 1.24742 1.01783 0.97078 0.97565 1.69665 1.46969 1.26968 1.14734 0.86187 0.77312 0.83785 0.78912 1.21751 1.21799 1.20795 1.23317 0.99752 0.97398 0.97224 1.23221 0.98101 0.93651 0.92382 1.22169 0.94077 0.95888 1.01789 1.22714 0.96601 0.98152 1.00498 1.22288 0.98608 0.91652 1.01693 0.90845 0.91228 0.91485 0.76323 0.91364 0.89156 0.96209 0.96423 0.78338 0.93579 0.88728 0.91318 0.89578 0.88638 0.90513 0.89723 0.88329 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.57 36.00 0.34 -0.55 16 2 C -0.17 -1.82 6.00 -102.85 -0.62 -2.44 16 3 C 0.56 7.70 7.75 -12.67 -0.10 7.60 16 4 O -0.54 -9.18 14.75 5.26 0.08 -9.10 16 5 N -0.71 -8.76 5.21 -54.20 -0.28 -9.04 16 6 C 0.12 1.56 4.32 -67.12 -0.29 1.26 16 7 H 0.10 1.39 7.46 -51.93 -0.39 1.01 16 8 C -0.14 -2.15 7.43 -25.92 -0.19 -2.34 16 9 C -0.11 -1.80 3.63 -89.81 -0.33 -2.12 16 10 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 11 C 0.16 3.28 6.10 -4.04 -0.02 3.26 16 12 N -0.73 -18.86 5.60 -59.91 -0.34 -19.20 16 13 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 14 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 15 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 16 N -0.93 -28.66 13.06 55.49 0.72 -27.93 16 17 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 C -0.14 -1.73 7.39 -25.92 -0.19 -1.92 16 22 C -0.07 -0.73 6.60 -100.48 -0.66 -1.39 16 23 C -0.10 -1.01 6.99 -27.56 -0.19 -1.20 16 24 C -0.14 -1.04 8.17 -26.21 -0.21 -1.26 16 25 C -0.11 -0.75 7.71 -27.41 -0.21 -0.96 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.47 7.91 -51.93 -0.41 0.06 16 28 H 0.07 0.49 6.70 -51.93 -0.35 0.14 16 29 H 0.40 4.19 6.80 -40.82 -0.28 3.91 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.42 7.89 -51.93 -0.41 1.01 16 32 H 0.02 0.41 7.84 -51.93 -0.41 0.00 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.38 10.37 7.67 -40.82 -0.31 10.05 16 35 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.09 1.02 7.49 -51.93 -0.39 0.64 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 352.07 15.07 5.31 5.31 Total: -1.00 -33.23 352.07 -9.59 -42.82 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -7.14 Total: 9.03 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -2.92 Total: -9.57 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.11 Total: -56.17 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.08 Total: -9.10 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.23 -9.59 -42.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675739630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.316 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds