Wall clock time and date at job start Tue Mar 31 2020 00:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.47101 * 120.00009 * 2 1 4 4 O 1.21618 * 120.00012 * 179.97438 * 3 2 1 5 5 N 1.34772 * 120.00178 * 359.97438 * 3 2 1 6 6 C 1.46499 * 120.00159 * 179.97438 * 5 3 2 7 7 H 1.08998 * 112.85181 * 336.19542 * 6 5 3 8 8 C 1.53779 * 113.61545 * 107.50336 * 6 5 3 9 9 C 1.53782 * 87.08303 * 89.11662 * 8 6 5 10 10 H 1.09002 * 113.68836 * 270.87969 * 9 8 6 11 11 C 1.52996 * 113.61754 * 139.98378 * 9 8 6 12 12 N 1.46498 * 109.47059 * 87.50116 * 11 9 8 13 13 C 1.36943 * 119.99752 * 179.72430 * 12 11 9 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31624 * 119.99698 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47294 * 90.00155 * 17 15 13 19 19 H 1.48499 * 109.47218 * 210.00015 * 17 15 13 20 20 H 1.48496 * 109.47166 * 329.99846 * 17 15 13 21 21 C 1.53781 * 113.61572 * 205.00134 * 6 5 3 22 22 C 1.32992 * 120.00439 * 179.97438 * 2 1 3 23 23 C 1.51409 * 136.32358 * 179.63574 * 22 2 1 24 24 C 1.53375 * 87.51663 * 206.05571 * 23 22 2 25 25 C 1.51416 * 136.31043 * 0.02562 * 22 2 1 26 26 H 1.09004 * 109.46761 * 90.00236 * 1 2 3 27 27 H 1.08998 * 109.47224 * 209.99945 * 1 2 3 28 28 H 1.08998 * 109.47350 * 330.00603 * 1 2 3 29 29 H 0.97002 * 119.99917 * 359.97438 * 5 3 2 30 30 H 1.09004 * 113.61558 * 334.56920 * 8 6 5 31 31 H 1.08990 * 113.61965 * 203.66414 * 8 6 5 32 32 H 1.09004 * 109.47066 * 327.50383 * 11 9 8 33 33 H 1.08994 * 109.46974 * 207.50531 * 11 9 8 34 34 H 0.97001 * 120.00384 * 0.02562 * 12 11 9 35 35 H 0.96999 * 119.99739 * 180.02562 * 16 15 13 36 36 H 1.08997 * 113.61825 * 156.33559 * 21 6 5 37 37 H 1.09005 * 113.61700 * 25.43102 * 21 6 5 38 38 H 1.09003 * 113.55581 * 320.63657 * 23 22 2 39 39 H 1.09000 * 113.56045 * 91.36732 * 23 22 2 40 40 H 1.09006 * 113.96743 * 220.28810 * 24 23 22 41 41 H 1.08998 * 113.71471 * 88.80946 * 24 23 22 42 42 H 1.09001 * 113.55715 * 268.62618 * 25 22 2 43 43 H 1.08993 * 113.56086 * 39.36130 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4587 1.2739 0.0005 5 7 1.5686 2.4411 -0.0005 6 6 2.3011 3.7098 0.0000 7 1 3.3083 3.6169 0.4062 8 6 2.2432 4.4552 -1.3438 9 6 0.9642 5.1322 -0.8236 10 1 0.0528 4.5781 -1.0486 11 6 0.8635 6.6147 -1.1882 12 7 0.2327 6.7524 -2.5032 13 6 0.0306 7.9964 -3.0387 14 1 0.3403 8.8758 -2.4936 15 6 -0.5724 8.1272 -4.2822 16 7 -0.9503 7.0554 -4.9463 17 14 -0.8475 9.8241 -5.0130 18 1 0.3357 10.2123 -5.8223 19 1 -2.0534 9.8005 -5.8792 20 1 -1.0433 10.8085 -3.9187 21 6 1.5028 4.8819 0.5949 22 6 2.1720 -1.1517 0.0005 23 6 3.6251 -1.5772 -0.0059 24 6 3.1708 -2.8820 -0.6718 25 6 1.8138 -2.6229 0.0007 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 0.5986 2.4411 -0.0013 30 1 2.0740 3.8010 -2.1991 31 1 3.0721 5.1464 -1.4958 32 1 1.8623 7.0504 -1.2170 33 1 0.2626 7.1326 -0.4408 34 1 -0.0458 5.9626 -2.9927 35 1 -1.3713 7.1468 -5.8154 36 1 2.1293 5.6897 0.9729 37 1 0.7358 4.5721 1.3049 38 1 4.2567 -0.9605 -0.6454 39 1 4.0420 -1.7188 0.9912 40 1 3.6835 -3.7699 -0.3015 41 1 3.1395 -2.8310 -1.7601 42 1 1.7336 -3.0516 0.9997 43 1 0.9604 -2.8636 -0.6332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675739630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:16 Heat of formation + Delta-G solvation = 5.649638 kcal Electronic energy + Delta-G solvation = -21104.628517 eV Core-core repulsion = 17957.662346 eV Total energy + Delta-G solvation = -3146.966171 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41120 -40.05241 -38.87340 -36.33858 -34.88295 -33.60225 -32.55963 -28.53869 -27.48655 -26.64699 -26.42470 -25.47721 -24.21664 -22.90212 -21.74412 -20.32329 -19.19329 -19.06172 -17.51993 -17.12585 -16.72060 -16.51673 -16.08570 -15.96913 -15.57911 -15.20177 -15.09809 -14.64662 -14.45929 -13.92349 -13.72862 -13.40213 -13.32234 -13.29695 -13.10283 -12.91897 -12.86770 -12.69424 -12.48321 -12.17827 -11.93163 -11.90094 -11.74130 -11.43379 -11.36819 -11.15045 -10.86934 -10.68705 -10.12554 -9.72983 -8.98406 -7.95379 -5.23837 0.34892 1.46505 1.48566 1.56975 2.12454 2.23732 2.55851 3.37473 3.39817 3.56953 3.57459 3.60284 3.81982 3.92454 3.94160 3.98570 4.23486 4.32305 4.41214 4.54743 4.69249 4.74081 4.75754 4.79231 4.82429 4.83207 4.88914 4.91979 4.97290 4.99359 5.03945 5.08268 5.13897 5.26490 5.35334 5.36201 5.38040 5.49030 5.66329 5.74536 6.27469 6.56972 7.22986 7.33192 8.11000 8.33531 9.28342 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029443 B = 0.002884 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.766255 B = 9707.583111 C =10098.813995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.185 4.185 3 C 0.550 3.450 4 O -0.584 6.584 5 N -0.698 5.698 6 C 0.125 3.875 7 H 0.092 0.908 8 C -0.143 4.143 9 C -0.110 4.110 10 H 0.085 0.915 11 C 0.160 3.840 12 N -0.746 5.746 13 C -0.246 4.246 14 H 0.075 0.925 15 C -0.078 4.078 16 N -0.970 5.970 17 Si 0.974 3.026 18 H -0.288 1.288 19 H -0.294 1.294 20 H -0.268 1.268 21 C -0.115 4.115 22 C -0.079 4.079 23 C -0.115 4.115 24 C -0.134 4.134 25 C -0.092 4.092 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.412 0.588 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.020 0.980 33 H 0.023 0.977 34 H 0.373 0.627 35 H 0.251 0.749 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.120 0.880 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.940 -20.073 14.829 25.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.188 4.188 3 C 0.341 3.659 4 O -0.465 6.465 5 N -0.350 5.350 6 C 0.019 3.981 7 H 0.111 0.889 8 C -0.182 4.182 9 C -0.129 4.129 10 H 0.104 0.896 11 C 0.034 3.966 12 N -0.388 5.388 13 C -0.378 4.378 14 H 0.093 0.907 15 C -0.270 4.270 16 N -0.621 5.621 17 Si 0.803 3.197 18 H -0.215 1.215 19 H -0.221 1.221 20 H -0.193 1.193 21 C -0.154 4.154 22 C -0.081 4.081 23 C -0.152 4.152 24 C -0.171 4.171 25 C -0.129 4.129 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.250 0.750 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.038 0.962 33 H 0.041 0.959 34 H 0.204 0.796 35 H 0.060 0.940 36 H 0.126 0.874 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.138 0.862 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.790 -19.859 14.856 25.259 hybrid contribution -0.541 0.990 -1.193 1.641 sum 4.249 -18.869 13.664 23.681 Atomic orbital electron populations 1.20714 0.88247 1.04163 1.03125 1.20575 0.97337 0.90108 1.10741 1.18807 0.86977 0.84961 0.75177 1.90734 1.15313 1.88312 1.52179 1.45578 1.10721 1.04501 1.74153 1.21763 0.96805 0.82903 0.96637 0.88943 1.23419 0.98560 0.99019 0.97188 1.22674 0.97657 0.95216 0.97346 0.89650 1.20824 0.94989 0.94593 0.86202 1.42591 1.72514 1.04980 1.18726 1.19672 1.31234 0.86693 1.00161 0.90688 1.25593 1.02341 1.00825 0.98270 1.69823 1.48272 1.29087 1.14959 0.85124 0.76805 0.79607 0.78145 1.21529 1.22065 1.19311 1.23227 0.99814 0.96903 0.95432 1.23715 0.98523 0.95257 0.90614 1.22290 0.93788 0.97159 1.01944 1.22698 0.96818 0.97414 1.00200 1.22337 0.98733 0.88767 1.03016 0.90859 0.89374 0.90741 0.75043 0.93329 0.89653 0.96200 0.95897 0.79571 0.94029 0.87440 0.88959 0.92623 0.87940 0.88396 0.90135 0.86191 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.57 71.23 0.68 -0.85 16 2 C -0.18 -3.94 6.00 -18.71 -0.11 -4.05 16 3 C 0.55 15.26 7.75 86.57 0.67 15.93 16 4 O -0.58 -20.42 14.75 -4.09 -0.06 -20.48 16 5 N -0.70 -16.94 5.21 -443.64 -2.31 -19.25 16 6 C 0.12 3.26 4.32 45.52 0.20 3.46 16 7 H 0.09 2.60 7.46 -2.39 -0.02 2.58 16 8 C -0.14 -4.49 7.43 31.12 0.23 -4.25 16 9 C -0.11 -3.41 3.63 -10.27 -0.04 -3.45 16 10 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 11 C 0.16 6.38 6.10 86.38 0.53 6.90 16 12 N -0.75 -38.68 5.60 -343.46 -1.92 -40.60 16 13 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 14 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 15 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 16 N -0.97 -60.36 13.06 21.65 0.28 -60.07 16 17 Si 0.97 46.75 29.55 68.60 2.03 48.78 16 18 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 19 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 C -0.12 -2.65 7.39 31.12 0.23 -2.42 16 22 C -0.08 -1.54 6.60 -17.17 -0.11 -1.65 16 23 C -0.11 -2.24 6.99 30.06 0.21 -2.03 16 24 C -0.13 -1.74 8.17 30.93 0.25 -1.48 16 25 C -0.09 -1.07 7.71 30.16 0.23 -0.83 16 26 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.09 0.94 7.91 -2.39 -0.02 0.92 16 28 H 0.07 0.93 6.70 -2.39 -0.02 0.92 16 29 H 0.41 8.10 6.80 -92.71 -0.63 7.47 16 30 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.08 2.73 7.89 -2.39 -0.02 2.71 16 32 H 0.02 0.80 7.84 -2.38 -0.02 0.78 16 33 H 0.02 0.90 8.14 -2.39 -0.02 0.89 16 34 H 0.37 20.58 7.67 -92.71 -0.71 19.87 16 35 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.11 2.25 8.10 -2.39 -0.02 2.23 16 37 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.06 1.41 7.49 -2.39 -0.02 1.40 16 39 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -72.57 352.07 1.95 -70.61 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: -0.34 Total: 33.02 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 4.28 Total: -12.01 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -3.95 Total: -119.92 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.06 Total: -20.48 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -72.57 1.95 -70.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675739630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.264 kcal (2) G-P(sol) polarization free energy of solvation -72.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds