Wall clock time and date at job start Tue Mar 31 2020 00:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47203 * 1 3 3 C 1.17398 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 203.12990 * 3 2 1 5 5 C 1.52994 * 109.47415 * 84.19123 * 4 3 2 6 6 C 1.53001 * 109.47508 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47266 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00364 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00012 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00119 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47108 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.85043 * 314.66487 * 11 10 9 13 13 C 1.53785 * 113.69093 * 85.93603 * 11 10 9 14 14 C 1.53779 * 87.08093 * 139.99088 * 13 11 10 15 15 H 1.09005 * 113.69135 * 89.12376 * 14 13 11 16 16 N 1.46496 * 113.61356 * 220.01890 * 14 13 11 17 17 C 1.36945 * 119.99782 * 252.49951 * 16 14 13 18 18 H 1.08001 * 119.99921 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00002 * 180.02562 * 17 16 14 20 20 N 1.31618 * 120.00096 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99995 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47170 * 89.99951 * 21 19 17 23 23 H 1.48496 * 109.46969 * 210.00131 * 21 19 17 24 24 H 1.48499 * 109.47070 * 330.00097 * 21 19 17 25 25 C 1.53781 * 113.61293 * 183.47228 * 11 10 9 26 26 H 1.09002 * 109.47009 * 252.68014 * 1 2 3 27 27 H 1.08996 * 109.47404 * 12.68059 * 1 2 3 28 28 H 1.09005 * 109.47024 * 132.68373 * 1 2 3 29 29 H 1.08996 * 109.47497 * 324.18828 * 4 3 2 30 30 H 1.09005 * 109.46675 * 204.18670 * 4 3 2 31 31 H 1.09009 * 109.47274 * 59.99505 * 5 4 3 32 32 H 1.09002 * 109.47385 * 299.99938 * 5 4 3 33 33 H 1.09000 * 109.46609 * 59.99694 * 6 5 4 34 34 H 1.08996 * 109.47023 * 299.99701 * 6 5 4 35 35 H 0.96997 * 119.99419 * 359.97438 * 9 7 6 36 36 H 1.09005 * 109.46936 * 59.99437 * 10 9 7 37 37 H 1.09004 * 109.46937 * 300.00111 * 10 9 7 38 38 H 1.09003 * 113.60734 * 254.54208 * 13 11 10 39 39 H 1.08996 * 113.61146 * 25.43706 * 13 11 10 40 40 H 0.96999 * 120.00578 * 72.49698 * 16 14 13 41 41 H 0.97002 * 119.99835 * 180.02562 * 20 19 17 42 42 H 1.09005 * 113.61302 * 334.47929 * 25 11 10 43 43 H 1.08996 * 113.61527 * 105.30092 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0003 5 6 4.6284 -0.1438 -1.4347 6 6 6.1584 -0.1418 -1.4345 7 6 6.6611 -0.2845 -2.8479 8 8 5.8733 -0.3790 -3.7652 9 7 7.9863 -0.3082 -3.0927 10 6 8.4751 -0.4475 -4.4668 11 6 10.0050 -0.4455 -4.4665 12 1 10.4272 0.3374 -3.8364 13 6 10.6248 -1.8320 -4.2248 14 6 11.6702 -1.4637 -5.2908 15 1 12.5482 -0.9592 -4.8873 16 7 12.0119 -2.5724 -6.1852 17 6 13.2281 -3.1921 -6.0737 18 1 13.9353 -2.8632 -5.3267 19 6 13.5521 -4.2423 -6.9216 20 7 14.7211 -4.8376 -6.8148 21 14 12.3291 -4.8108 -8.2141 22 1 12.5508 -4.0538 -9.4723 23 1 12.5173 -6.2615 -8.4695 24 1 10.9469 -4.5690 -7.7280 25 6 10.6213 -0.5023 -5.8743 26 1 -0.3633 -0.3059 0.9811 27 1 -0.3634 1.0025 -0.2256 28 1 -0.3633 -0.6967 -0.7555 29 1 4.4820 -0.8312 0.6016 30 1 4.4804 0.9396 0.4214 31 1 4.2644 0.6893 -2.0361 32 1 4.2660 -1.0815 -1.8559 33 1 6.5227 -0.9747 -0.8330 34 1 6.5205 0.7961 -1.0135 35 1 8.6164 -0.2330 -2.3591 36 1 8.1110 0.3855 -5.0681 37 1 8.1127 -1.3853 -4.8879 38 1 11.0440 -1.9546 -3.2261 39 1 9.9755 -2.6573 -4.5167 40 1 11.3769 -2.8677 -6.8563 41 1 14.9477 -5.5713 -7.4075 42 1 9.9711 -0.9642 -6.6173 43 1 11.0364 0.4487 -6.2079 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688909349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:35 Heat of formation + Delta-G solvation = 18.827880 kcal Electronic energy + Delta-G solvation = -20039.040364 eV Core-core repulsion = 16892.645644 eV Total energy + Delta-G solvation = -3146.394720 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.95783 -38.63750 -36.04546 -34.76738 -33.59428 -33.32128 -30.84870 -30.07544 -27.89815 -26.37721 -25.22108 -23.73578 -22.41926 -20.99070 -20.44001 -19.31278 -17.55069 -17.42067 -16.48070 -16.29352 -16.10157 -15.19181 -14.87462 -14.60575 -14.24238 -14.17623 -13.99897 -13.85339 -13.54118 -13.41274 -12.75301 -12.63672 -12.54207 -12.20511 -11.99959 -11.85567 -11.63322 -11.59955 -11.23030 -10.90953 -10.50531 -10.36946 -10.17234 -10.09114 -9.98892 -9.89117 -9.78022 -9.55402 -9.09137 -8.91430 -7.28773 -5.80212 -3.15771 2.38973 2.43617 2.54813 3.10881 3.36488 3.39718 3.44389 3.92576 4.48657 4.56709 4.66418 4.69633 4.85589 4.86346 5.06211 5.08411 5.11846 5.18327 5.23679 5.25759 5.31260 5.32913 5.37620 5.40706 5.61773 5.65889 5.71351 5.78400 5.80686 5.84949 5.97352 6.15728 6.17643 6.21484 6.37737 6.48105 6.66652 6.96114 7.37215 7.41262 7.96158 8.13673 8.39615 9.17492 9.90324 10.10051 11.37951 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032807 B = 0.002216 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.265871 B =12630.679834 C =12927.912362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C -0.197 4.197 3 C -0.185 4.185 4 C -0.007 4.007 5 C -0.099 4.099 6 C -0.141 4.141 7 C 0.508 3.492 8 O -0.544 6.544 9 N -0.727 5.727 10 C 0.131 3.869 11 C -0.127 4.127 12 H 0.091 0.909 13 C -0.161 4.161 14 C 0.172 3.828 15 H 0.084 0.916 16 N -0.737 5.737 17 C -0.249 4.249 18 H 0.091 0.909 19 C 0.005 3.995 20 N -0.933 5.933 21 Si 0.884 3.116 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.146 4.146 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.401 0.599 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.078 0.922 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.794 12.834 14.908 29.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.197 4.197 3 C -0.185 4.185 4 C -0.043 4.043 5 C -0.137 4.137 6 C -0.182 4.182 7 C 0.294 3.706 8 O -0.422 6.422 9 N -0.378 5.378 10 C 0.008 3.992 11 C -0.146 4.146 12 H 0.109 0.891 13 C -0.201 4.201 14 C 0.060 3.940 15 H 0.102 0.898 16 N -0.377 5.377 17 C -0.379 4.379 18 H 0.109 0.891 19 C -0.191 4.191 20 N -0.580 5.580 21 Si 0.714 3.286 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.186 4.186 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.235 0.765 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.196 0.804 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.082 12.660 14.264 29.178 hybrid contribution -0.462 -0.520 -0.573 0.901 sum -22.544 12.141 13.692 29.036 Atomic orbital electron populations 1.18846 0.84749 1.03018 1.02949 1.22435 0.94003 1.01938 1.01373 1.22319 0.93666 1.01181 1.01370 1.18706 0.84501 1.03188 0.97927 1.21280 0.92950 1.04287 0.95220 1.21683 0.97402 1.04567 0.94499 1.20682 0.82320 0.76139 0.91424 1.90715 1.55382 1.49438 1.46643 1.46081 1.06926 1.74598 1.10206 1.21412 0.93652 1.01841 0.82324 1.22635 0.92606 0.99729 0.99615 0.89099 1.23908 1.00262 0.94808 1.01168 1.21510 0.93682 0.88415 0.90374 0.89781 1.42765 1.17719 1.37526 1.39675 1.19141 0.91776 1.11368 1.15610 0.89132 1.24693 0.96626 0.98469 0.99282 1.69702 1.21063 1.26165 1.41077 0.86560 0.81299 0.78144 0.82585 1.21009 1.21688 1.20298 1.23470 0.99213 1.00714 0.95160 0.90311 0.90284 0.90187 0.89509 0.89569 0.90814 0.90746 0.88555 0.88672 0.76503 0.91812 0.91425 0.92299 0.90495 0.80447 0.93024 0.90368 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.23 10.32 34.37 0.35 0.13 16 2 C -0.20 -1.87 14.13 -37.12 -0.52 -2.40 16 3 C -0.19 -1.80 13.34 -37.12 -0.50 -2.30 16 4 C -0.01 -0.05 5.70 -29.52 -0.17 -0.21 16 5 C -0.10 -0.84 4.46 -26.73 -0.12 -0.96 16 6 C -0.14 -0.99 5.70 -27.88 -0.16 -1.15 16 7 C 0.51 5.73 7.83 -10.98 -0.09 5.65 16 8 O -0.54 -8.61 15.98 5.56 0.09 -8.52 16 9 N -0.73 -7.35 5.56 -60.29 -0.33 -7.68 16 10 C 0.13 1.60 5.50 -4.04 -0.02 1.57 16 11 C -0.13 -1.54 3.75 -89.81 -0.34 -1.88 16 12 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 13 C -0.16 -2.46 7.43 -25.92 -0.19 -2.66 16 14 C 0.17 3.12 4.48 -67.12 -0.30 2.82 16 15 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 16 N -0.74 -17.18 5.21 -52.63 -0.27 -17.45 16 17 C -0.25 -6.96 10.45 -15.06 -0.16 -7.11 16 18 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 19 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 20 N -0.93 -29.16 13.97 55.49 0.78 -28.38 16 21 Si 0.88 22.12 27.74 -169.99 -4.71 17.41 16 22 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 25 C -0.15 -2.13 7.39 -25.92 -0.19 -2.32 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.73 8.10 -51.92 -0.42 0.31 16 32 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.40 2.95 8.47 -40.82 -0.35 2.60 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.95 7.88 -51.93 -0.41 0.55 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.29 7.92 -51.93 -0.41 0.88 16 40 H 0.36 8.37 5.79 -40.82 -0.24 8.13 16 41 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 42 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -34.75 363.55 -8.80 -43.55 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.33 Total: 6.36 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.49 Total: -10.77 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.17 Total: -53.51 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.75 -8.80 -43.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688909349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.378 kcal (2) G-P(sol) polarization free energy of solvation -34.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds