Wall clock time and date at job start Tue Mar 31 2020 00:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47203 * 1 3 3 C 1.17398 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 203.12990 * 3 2 1 5 5 C 1.52994 * 109.47415 * 84.19123 * 4 3 2 6 6 C 1.53001 * 109.47508 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47266 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00364 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00012 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00119 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47108 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.85043 * 314.66487 * 11 10 9 13 13 C 1.53785 * 113.69093 * 85.93603 * 11 10 9 14 14 C 1.53779 * 87.08093 * 139.99088 * 13 11 10 15 15 H 1.09005 * 113.69135 * 89.12376 * 14 13 11 16 16 N 1.46496 * 113.61356 * 220.01890 * 14 13 11 17 17 C 1.36945 * 119.99782 * 252.49951 * 16 14 13 18 18 H 1.08001 * 119.99921 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00002 * 180.02562 * 17 16 14 20 20 N 1.31618 * 120.00096 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99995 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47170 * 89.99951 * 21 19 17 23 23 H 1.48496 * 109.46969 * 210.00131 * 21 19 17 24 24 H 1.48499 * 109.47070 * 330.00097 * 21 19 17 25 25 C 1.53781 * 113.61293 * 183.47228 * 11 10 9 26 26 H 1.09002 * 109.47009 * 252.68014 * 1 2 3 27 27 H 1.08996 * 109.47404 * 12.68059 * 1 2 3 28 28 H 1.09005 * 109.47024 * 132.68373 * 1 2 3 29 29 H 1.08996 * 109.47497 * 324.18828 * 4 3 2 30 30 H 1.09005 * 109.46675 * 204.18670 * 4 3 2 31 31 H 1.09009 * 109.47274 * 59.99505 * 5 4 3 32 32 H 1.09002 * 109.47385 * 299.99938 * 5 4 3 33 33 H 1.09000 * 109.46609 * 59.99694 * 6 5 4 34 34 H 1.08996 * 109.47023 * 299.99701 * 6 5 4 35 35 H 0.96997 * 119.99419 * 359.97438 * 9 7 6 36 36 H 1.09005 * 109.46936 * 59.99437 * 10 9 7 37 37 H 1.09004 * 109.46937 * 300.00111 * 10 9 7 38 38 H 1.09003 * 113.60734 * 254.54208 * 13 11 10 39 39 H 1.08996 * 113.61146 * 25.43706 * 13 11 10 40 40 H 0.96999 * 120.00578 * 72.49698 * 16 14 13 41 41 H 0.97002 * 119.99835 * 180.02562 * 20 19 17 42 42 H 1.09005 * 113.61302 * 334.47929 * 25 11 10 43 43 H 1.08996 * 113.61527 * 105.30092 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0003 5 6 4.6284 -0.1438 -1.4347 6 6 6.1584 -0.1418 -1.4345 7 6 6.6611 -0.2845 -2.8479 8 8 5.8733 -0.3790 -3.7652 9 7 7.9863 -0.3082 -3.0927 10 6 8.4751 -0.4475 -4.4668 11 6 10.0050 -0.4455 -4.4665 12 1 10.4272 0.3374 -3.8364 13 6 10.6248 -1.8320 -4.2248 14 6 11.6702 -1.4637 -5.2908 15 1 12.5482 -0.9592 -4.8873 16 7 12.0119 -2.5724 -6.1852 17 6 13.2281 -3.1921 -6.0737 18 1 13.9353 -2.8632 -5.3267 19 6 13.5521 -4.2423 -6.9216 20 7 14.7211 -4.8376 -6.8148 21 14 12.3291 -4.8108 -8.2141 22 1 12.5508 -4.0538 -9.4723 23 1 12.5173 -6.2615 -8.4695 24 1 10.9469 -4.5690 -7.7280 25 6 10.6213 -0.5023 -5.8743 26 1 -0.3633 -0.3059 0.9811 27 1 -0.3634 1.0025 -0.2256 28 1 -0.3633 -0.6967 -0.7555 29 1 4.4820 -0.8312 0.6016 30 1 4.4804 0.9396 0.4214 31 1 4.2644 0.6893 -2.0361 32 1 4.2660 -1.0815 -1.8559 33 1 6.5227 -0.9747 -0.8330 34 1 6.5205 0.7961 -1.0135 35 1 8.6164 -0.2330 -2.3591 36 1 8.1110 0.3855 -5.0681 37 1 8.1127 -1.3853 -4.8879 38 1 11.0440 -1.9546 -3.2261 39 1 9.9755 -2.6573 -4.5167 40 1 11.3769 -2.8677 -6.8563 41 1 14.9477 -5.5713 -7.4075 42 1 9.9711 -0.9642 -6.6173 43 1 11.0364 0.4487 -6.2079 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688909349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:34 Heat of formation + Delta-G solvation = -4.172456 kcal Electronic energy + Delta-G solvation = -20040.037733 eV Core-core repulsion = 16892.645644 eV Total energy + Delta-G solvation = -3147.392089 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.91565 -39.86131 -36.69858 -36.06339 -34.98941 -34.19117 -32.76265 -30.76756 -28.88376 -27.15444 -26.46726 -25.48490 -23.24457 -22.29830 -21.39905 -20.64756 -19.35687 -18.30489 -17.22782 -17.17543 -16.97453 -16.52649 -16.17531 -15.82834 -15.59855 -14.86289 -14.74025 -14.70491 -14.57724 -14.24321 -14.20281 -13.96617 -13.32117 -13.28171 -13.25362 -13.08290 -13.01359 -12.69896 -12.47270 -12.14136 -11.90291 -11.85080 -11.69028 -11.60414 -11.12861 -10.91495 -10.82667 -10.62256 -10.57732 -10.02858 -9.26709 -8.03325 -5.35419 1.36959 1.39012 1.46225 1.69946 1.71522 1.77715 2.29794 2.47069 3.27220 3.38688 3.59976 3.69943 3.77356 3.90699 4.08735 4.10279 4.13792 4.28751 4.39336 4.50253 4.55847 4.66199 4.70903 4.76014 4.79786 4.81416 4.85232 4.88491 4.95566 4.98315 5.04565 5.14735 5.20991 5.22824 5.31838 5.35880 5.50001 5.67546 5.78100 6.22796 6.63567 6.72794 7.07709 7.33204 7.86358 8.03599 9.18139 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032807 B = 0.002216 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.265871 B =12630.679834 C =12927.912362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.221 4.221 3 C -0.215 4.215 4 C -0.003 4.003 5 C -0.094 4.094 6 C -0.130 4.130 7 C 0.502 3.498 8 O -0.597 6.597 9 N -0.716 5.716 10 C 0.136 3.864 11 C -0.095 4.095 12 H 0.122 0.878 13 C -0.154 4.154 14 C 0.145 3.855 15 H 0.080 0.920 16 N -0.745 5.745 17 C -0.232 4.232 18 H 0.061 0.939 19 C -0.065 4.065 20 N -0.983 5.983 21 Si 0.952 3.048 22 H -0.278 1.278 23 H -0.297 1.297 24 H -0.256 1.256 25 C -0.138 4.138 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.418 0.582 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.364 0.636 41 H 0.257 0.743 42 H 0.073 0.927 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.369 14.368 16.309 31.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.221 4.221 3 C -0.215 4.215 4 C -0.039 4.039 5 C -0.133 4.133 6 C -0.170 4.170 7 C 0.290 3.710 8 O -0.479 6.479 9 N -0.368 5.368 10 C 0.012 3.988 11 C -0.114 4.114 12 H 0.140 0.860 13 C -0.194 4.194 14 C 0.036 3.964 15 H 0.098 0.902 16 N -0.386 5.386 17 C -0.363 4.363 18 H 0.079 0.921 19 C -0.256 4.256 20 N -0.634 5.634 21 Si 0.780 3.220 22 H -0.205 1.205 23 H -0.224 1.224 24 H -0.181 1.181 25 C -0.178 4.178 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.141 0.859 34 H 0.147 0.853 35 H 0.255 0.745 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.197 0.803 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.680 14.253 15.724 31.798 hybrid contribution 0.036 -0.921 -0.928 1.308 sum -23.644 13.332 14.796 30.914 Atomic orbital electron populations 1.19050 0.82818 1.04007 1.04098 1.23424 0.95500 1.01994 1.01169 1.23164 0.95033 1.01516 1.01834 1.18809 0.83029 1.05056 0.96990 1.21170 0.94203 1.02029 0.95848 1.21707 0.95946 1.07417 0.91891 1.21467 0.82059 0.74785 0.92652 1.90700 1.56682 1.51864 1.48606 1.45967 1.07124 1.73814 1.09893 1.21197 0.93339 1.00733 0.83557 1.22465 0.92445 0.98358 0.98170 0.86017 1.23720 0.98984 0.96321 1.00399 1.21958 0.94986 0.88145 0.91329 0.90211 1.42814 1.16143 1.38746 1.40893 1.19151 0.92723 1.10655 1.13755 0.92108 1.25480 0.98640 0.99296 1.02194 1.69877 1.23475 1.27302 1.42736 0.85451 0.79829 0.76982 0.79750 1.20453 1.22376 1.18085 1.23370 0.97731 1.00182 0.96472 0.88778 0.89103 0.89498 0.87710 0.87363 0.92905 0.93353 0.85867 0.85268 0.74488 0.91892 0.93650 0.91323 0.92022 0.80278 0.93425 0.90805 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.46 10.32 70.18 0.72 0.26 16 2 C -0.22 -4.10 14.13 31.13 0.44 -3.66 16 3 C -0.22 -4.04 13.34 31.13 0.42 -3.63 16 4 C 0.00 -0.03 5.70 28.79 0.16 0.13 16 5 C -0.09 -1.48 4.46 30.59 0.14 -1.35 16 6 C -0.13 -1.42 5.70 29.85 0.17 -1.25 16 7 C 0.50 10.34 7.83 87.65 0.69 11.03 16 8 O -0.60 -18.74 15.98 -3.03 -0.05 -18.79 16 9 N -0.72 -12.36 5.56 -463.05 -2.57 -14.93 16 10 C 0.14 3.00 5.50 86.38 0.48 3.47 16 11 C -0.10 -2.02 3.75 -10.27 -0.04 -2.06 16 12 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 13 C -0.15 -4.39 7.43 31.12 0.23 -4.16 16 14 C 0.14 5.06 4.48 45.52 0.20 5.26 16 15 H 0.08 2.84 8.10 -2.38 -0.02 2.82 16 16 N -0.75 -34.23 5.21 -320.44 -1.67 -35.90 16 17 C -0.23 -13.11 10.45 84.03 0.88 -12.23 16 18 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 19 C -0.06 -3.82 5.50 84.86 0.47 -3.36 16 20 N -0.98 -63.12 13.97 21.65 0.30 -62.82 16 21 Si 0.95 46.04 27.74 68.60 1.90 47.94 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 24 H -0.26 -11.32 6.52 99.48 0.65 -10.68 16 25 C -0.14 -3.69 7.39 31.12 0.23 -3.46 16 26 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.05 1.03 8.10 -2.38 -0.02 1.02 16 32 H 0.05 0.99 8.10 -2.39 -0.02 0.98 16 33 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.42 4.38 8.47 -92.71 -0.79 3.60 16 36 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.05 1.23 7.88 -2.39 -0.02 1.21 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 1.98 7.92 -2.39 -0.02 1.96 16 40 H 0.36 16.33 5.79 -92.71 -0.54 15.79 16 41 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 42 H 0.07 2.07 8.08 -2.38 -0.02 2.05 16 43 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -78.90 363.55 2.72 -76.19 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -0.38 Total: 23.30 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 5.18 Total: -14.99 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -3.94 Total: -113.65 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.05 Total: -18.79 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.90 Total: 47.94 kcal Total: -78.90 2.72 -76.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688909349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.015 kcal (2) G-P(sol) polarization free energy of solvation -78.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds