Wall clock time and date at job start Tue Mar 31 2020 00:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47207 * 1 3 3 C 1.17398 * 179.97438 * 2 1 4 4 C 1.47198 * 179.97438 * 181.07009 * 3 2 1 5 5 C 1.53000 * 109.47246 * 355.10798 * 4 3 2 6 6 C 1.53001 * 109.47355 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47168 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00363 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99988 * 179.97438 * 7 6 5 10 10 C 1.46493 * 119.99864 * 179.72721 * 9 7 6 11 11 C 1.53001 * 109.47084 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46949 * 294.99717 * 11 10 9 13 13 N 1.46499 * 109.47392 * 54.99694 * 11 10 9 14 14 C 1.36941 * 120.00177 * 205.00605 * 13 11 10 15 15 H 1.08001 * 119.99593 * 359.97438 * 14 13 11 16 16 C 1.38805 * 119.99910 * 180.02562 * 14 13 11 17 17 N 1.31617 * 120.00315 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99791 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47070 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.46955 * 119.99814 * 18 16 14 21 21 H 1.48501 * 109.47000 * 239.99404 * 18 16 14 22 22 C 1.52997 * 109.47519 * 175.00001 * 11 10 9 23 23 C 1.53003 * 117.50025 * 248.74690 * 22 11 10 24 24 C 1.52997 * 117.50117 * 180.08541 * 22 11 10 25 25 H 1.08998 * 109.47341 * 3.82015 * 1 2 3 26 26 H 1.08998 * 109.46818 * 123.82321 * 1 2 3 27 27 H 1.09002 * 109.46988 * 243.82543 * 1 2 3 28 28 H 1.09000 * 109.47351 * 235.10774 * 4 3 2 29 29 H 1.09002 * 109.47023 * 115.10427 * 4 3 2 30 30 H 1.09000 * 109.46966 * 59.99739 * 5 4 3 31 31 H 1.09002 * 109.46807 * 299.99761 * 5 4 3 32 32 H 1.08998 * 109.46837 * 59.99832 * 6 5 4 33 33 H 1.09002 * 109.46926 * 299.99636 * 6 5 4 34 34 H 0.97000 * 119.99339 * 0.02562 * 9 7 6 35 35 H 1.09007 * 109.47196 * 299.99538 * 10 9 7 36 36 H 1.09006 * 109.47678 * 59.99732 * 10 9 7 37 37 H 0.97000 * 119.99498 * 24.99864 * 13 11 10 38 38 H 0.96997 * 120.00360 * 179.97438 * 17 16 14 39 39 H 1.09006 * 115.54757 * 34.41089 * 22 11 10 40 40 H 1.09001 * 117.49296 * 359.97438 * 23 22 11 41 41 H 1.08991 * 117.50309 * 145.01577 * 23 22 11 42 42 H 1.08999 * 117.49717 * 214.97918 * 24 22 11 43 43 H 1.08993 * 117.49842 * 359.97328 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6293 -1.4349 0.1230 6 6 6.1594 -1.4335 0.1237 7 6 6.6629 -2.8486 0.2455 8 8 5.8757 -3.7678 0.3245 9 7 7.9883 -3.0928 0.2666 10 6 8.4778 -4.4679 0.3910 11 6 10.0078 -4.4667 0.3904 12 1 10.3704 -4.1179 -0.5766 13 7 10.4959 -3.5751 1.4454 14 6 11.7369 -3.0058 1.3409 15 1 12.3560 -3.2143 0.4808 16 6 12.1996 -2.1615 2.3408 17 7 11.4453 -1.9077 3.3891 18 14 13.8928 -1.3853 2.1986 19 1 14.5355 -1.8277 0.9351 20 1 13.7607 0.0938 2.1959 21 1 14.7284 -1.8055 3.3520 22 6 10.5192 -5.8860 0.6450 23 6 11.2193 -6.1561 1.9784 24 6 12.0343 -6.0946 0.6841 25 1 -0.3634 1.0253 -0.0685 26 1 -0.3633 -0.5720 -0.8537 27 1 -0.3633 -0.4533 0.9223 28 1 4.4809 0.5900 0.8429 29 1 4.4810 0.4382 -0.9306 30 1 4.2665 -2.0231 -0.7199 31 1 4.2664 -1.8713 1.0536 32 1 6.5217 -0.8455 0.9668 33 1 6.5227 -0.9971 -0.8067 34 1 8.6179 -2.3576 0.2038 35 1 8.1156 -4.8995 1.3242 36 1 8.1142 -5.0605 -0.4485 37 1 9.9399 -3.3881 2.2179 38 1 11.7688 -1.3180 4.0881 39 1 9.9114 -6.6872 0.2243 40 1 11.3160 -5.3224 2.6739 41 1 11.0726 -7.1349 2.4347 42 1 12.4234 -7.0332 0.2895 43 1 12.6669 -5.2209 0.5279 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690164642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:16 Heat of formation + Delta-G solvation = 25.313808 kcal Electronic energy + Delta-G solvation = -20842.471452 eV Core-core repulsion = 17696.357984 eV Total energy + Delta-G solvation = -3146.113469 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.43127 -37.65553 -35.76187 -34.43175 -33.32499 -33.25131 -30.96314 -29.75050 -28.14421 -26.46191 -23.78897 -22.92576 -21.77673 -21.39468 -19.99306 -19.01893 -17.48556 -17.00444 -16.15879 -15.91197 -15.56781 -15.09597 -14.67917 -14.44017 -14.02955 -13.94088 -13.81510 -13.49586 -13.47581 -13.13039 -12.91511 -12.44307 -12.29722 -11.90143 -11.52687 -11.27822 -11.17349 -10.91958 -10.89166 -10.86838 -10.53215 -10.11418 -9.87347 -9.77824 -9.72892 -9.60562 -9.41093 -9.16355 -9.00974 -8.58616 -7.09475 -5.86712 -3.16782 2.59935 2.63778 3.00170 3.36103 3.43035 3.44868 3.61284 4.15359 4.47470 4.62310 4.91963 4.98995 5.05443 5.31064 5.31944 5.37348 5.43476 5.45288 5.48516 5.50926 5.57552 5.61095 5.68426 5.73681 5.83652 5.86774 5.98226 6.05503 6.09833 6.12538 6.27696 6.37546 6.46858 6.64642 6.75348 6.92429 7.00742 7.26432 7.57328 7.63385 7.98074 8.30510 8.62463 9.42964 9.96883 10.33210 11.34793 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.003249 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.985140 B = 8616.780729 C = 9791.615292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.205 4.205 3 C -0.178 4.178 4 C -0.009 4.009 5 C -0.096 4.096 6 C -0.142 4.142 7 C 0.509 3.491 8 O -0.557 6.557 9 N -0.714 5.714 10 C 0.119 3.881 11 C 0.192 3.808 12 H 0.057 0.943 13 N -0.717 5.717 14 C -0.238 4.238 15 H 0.072 0.928 16 C -0.009 4.009 17 N -0.928 5.928 18 Si 0.902 3.098 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.178 4.178 23 C -0.163 4.163 24 C -0.176 4.176 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.410 0.590 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.386 0.614 38 H 0.255 0.745 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.624 1.531 -7.446 14.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.205 4.205 3 C -0.178 4.178 4 C -0.046 4.046 5 C -0.134 4.134 6 C -0.182 4.182 7 C 0.295 3.705 8 O -0.437 6.437 9 N -0.365 5.365 10 C -0.006 4.006 11 C 0.081 3.919 12 H 0.075 0.925 13 N -0.359 5.359 14 C -0.369 4.369 15 H 0.090 0.910 16 C -0.205 4.205 17 N -0.576 5.576 18 Si 0.733 3.267 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.199 4.199 23 C -0.200 4.200 24 C -0.213 4.213 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.247 0.753 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.221 0.779 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.136 0.864 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.996 0.947 -7.438 15.004 hybrid contribution 1.229 0.727 0.302 1.460 sum -11.767 1.674 -7.136 13.863 Atomic orbital electron populations 1.18814 0.84843 1.02739 1.02941 1.22391 0.93966 1.01817 1.02350 1.22403 0.93704 1.00938 1.00781 1.18751 0.84294 0.98236 1.03296 1.21252 0.93288 0.94837 1.04063 1.21662 0.96901 0.94940 1.04702 1.20586 0.82461 0.91224 0.76182 1.90664 1.55666 1.46580 1.50743 1.46016 1.06823 1.10347 1.73319 1.21552 0.95098 0.82620 1.01289 1.19996 0.89507 0.88773 0.93634 0.92542 1.42482 1.18120 1.52933 1.22368 1.19208 0.92767 1.20898 1.04066 0.91023 1.24711 0.98240 1.00577 0.96989 1.69664 1.36758 1.40716 1.10446 0.86200 0.84297 0.78916 0.77238 1.20602 1.21941 1.21932 1.23073 0.94830 0.99321 1.02715 1.22912 1.03631 1.01849 0.91620 1.22854 0.93907 1.01863 1.02682 0.90448 0.90380 0.90331 0.89393 0.89557 0.91006 0.90857 0.88418 0.88873 0.75339 0.91833 0.91995 0.77936 0.93499 0.89651 0.86355 0.91290 0.91027 0.87933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.28 10.32 34.37 0.35 0.08 16 2 C -0.21 -2.37 14.13 -37.12 -0.52 -2.89 16 3 C -0.18 -2.17 13.34 -37.12 -0.50 -2.66 16 4 C -0.01 -0.09 5.70 -29.52 -0.17 -0.26 16 5 C -0.10 -1.14 4.46 -26.73 -0.12 -1.26 16 6 C -0.14 -1.67 5.70 -27.89 -0.16 -1.83 16 7 C 0.51 8.09 7.83 -10.98 -0.09 8.01 16 8 O -0.56 -10.74 15.98 5.56 0.09 -10.65 16 9 N -0.71 -11.44 5.39 -60.29 -0.32 -11.77 16 10 C 0.12 2.01 5.22 -4.04 -0.02 1.98 16 11 C 0.19 3.48 2.86 -67.93 -0.19 3.29 16 12 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 13 N -0.72 -15.67 3.07 -53.43 -0.16 -15.84 16 14 C -0.24 -5.84 8.16 -15.06 -0.12 -5.97 16 15 H 0.07 1.75 6.91 -52.49 -0.36 1.38 16 16 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 17 N -0.93 -25.92 13.06 55.49 0.72 -25.19 16 18 Si 0.90 21.09 29.55 -169.99 -5.02 16.06 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 C -0.18 -3.09 5.70 -90.62 -0.52 -3.60 16 23 C -0.16 -3.05 9.74 -26.69 -0.26 -3.31 16 24 C -0.18 -3.13 9.87 -26.69 -0.26 -3.39 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 31 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 32 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.41 6.53 8.13 -40.82 -0.33 6.20 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.39 9.31 7.80 -40.82 -0.32 9.00 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 40 H 0.12 2.64 6.68 -51.93 -0.35 2.30 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.10 2.03 6.22 -51.93 -0.32 1.71 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -29.59 362.92 -9.05 -38.64 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -7.15 Total: 15.42 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -2.67 Total: -12.15 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.24 Total: -52.79 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.59 -9.05 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690164642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.955 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds