Wall clock time and date at job start Tue Mar 31 2020 00:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 119.99993 * 2 1 4 4 C 1.52997 * 109.47432 * 125.00070 * 3 2 1 5 5 C 1.50702 * 112.84673 * 298.31652 * 4 3 2 6 6 O 1.21290 * 119.99939 * 113.56045 * 5 4 3 7 7 N 1.34774 * 119.99947 * 293.56160 * 5 4 3 8 8 C 1.46504 * 119.99526 * 174.99678 * 7 5 4 9 9 H 1.08995 * 112.91108 * 336.25240 * 8 7 5 10 10 C 1.53958 * 113.66490 * 107.55219 * 8 7 5 11 11 C 1.53787 * 87.11250 * 139.88790 * 10 8 7 12 12 H 1.08991 * 113.69160 * 89.19617 * 11 10 8 13 13 N 1.46502 * 113.61505 * 220.09266 * 11 10 8 14 14 C 1.36933 * 119.99881 * 252.49644 * 13 11 10 15 15 H 1.08004 * 119.99853 * 359.97438 * 14 13 11 16 16 C 1.38810 * 120.00283 * 179.97438 * 14 13 11 17 17 N 1.31617 * 119.99670 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00200 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47031 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46832 * 120.00573 * 18 16 14 21 21 H 1.48504 * 109.46950 * 240.00453 * 18 16 14 22 22 C 1.53789 * 113.60973 * 204.99863 * 8 7 5 23 23 C 1.53781 * 113.69337 * 69.58135 * 4 3 2 24 24 C 1.53784 * 87.08058 * 89.13170 * 23 4 3 25 25 C 1.53780 * 113.61931 * 167.12057 * 4 3 2 26 26 H 1.08002 * 119.99687 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00130 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.99521 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47559 * 4.99328 * 3 2 1 30 30 H 1.09006 * 109.46949 * 244.99533 * 3 2 1 31 31 H 0.96993 * 120.00125 * 354.99666 * 7 5 4 32 32 H 1.08998 * 113.53684 * 25.34108 * 10 8 7 33 33 H 1.09001 * 113.66722 * 254.45305 * 10 8 7 34 34 H 0.97001 * 120.00305 * 72.49079 * 13 11 10 35 35 H 0.97010 * 119.99893 * 179.97438 * 17 16 14 36 36 H 1.09000 * 113.61393 * 105.47754 * 22 8 7 37 37 H 1.08998 * 113.61221 * 334.64966 * 22 8 7 38 38 H 1.09001 * 113.61868 * 203.67815 * 23 4 3 39 39 H 1.09000 * 113.61608 * 334.58683 * 23 4 3 40 40 H 1.08999 * 113.61659 * 270.88871 * 24 23 4 41 41 H 1.08992 * 113.61551 * 139.97834 * 24 23 4 42 42 H 1.09007 * 113.61196 * 25.35068 * 25 4 3 43 43 H 1.09002 * 113.61455 * 156.15964 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 2.3379 1.2437 2.5146 6 8 2.4932 0.2664 3.2159 7 7 1.5417 2.2497 2.9275 8 6 0.7782 2.1165 4.1707 9 1 0.5987 1.0781 4.4493 10 6 1.3206 2.9796 5.3245 11 6 -0.1441 3.2759 5.6880 12 1 -0.5773 2.5559 6.3821 13 7 -0.3798 4.6652 6.0886 14 6 -0.6239 4.9671 7.4017 15 1 -0.6431 4.1809 8.1420 16 6 -0.8468 6.2835 7.7814 17 7 -0.8238 7.2415 6.8792 18 14 -1.1806 6.6952 9.5727 19 1 -1.1533 5.4494 10.3803 20 1 -0.1378 7.6290 10.0685 21 1 -2.5154 7.3347 9.6931 22 6 -0.4845 2.9933 4.2151 23 6 4.2134 0.3558 1.0360 24 6 4.9653 1.4919 0.3225 25 6 4.0691 2.4686 1.1022 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3586 2.1316 0.0894 30 1 2.6214 1.4025 -0.9314 31 1 1.4741 3.0619 2.4015 32 1 1.8732 3.8571 4.9891 33 1 1.8523 2.4085 6.0856 34 1 -0.3628 5.3713 5.4237 35 1 -0.9799 8.1615 7.1445 36 1 -1.4099 2.4333 4.0806 37 1 -0.4265 3.8749 3.5767 38 1 4.6606 0.0661 1.9869 39 1 3.9969 -0.4964 0.3919 40 1 4.8017 1.5145 -0.7549 41 1 6.0191 1.5554 0.5931 42 1 3.7359 3.3220 0.5115 43 1 4.4756 2.7575 2.0714 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690355836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:03 Heat of formation + Delta-G solvation = 25.458283 kcal Electronic energy + Delta-G solvation = -21740.070000 eV Core-core repulsion = 18593.962796 eV Total energy + Delta-G solvation = -3146.107204 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.79491 -38.79000 -37.22492 -34.51806 -34.01649 -32.62355 -29.93205 -28.57323 -25.94521 -25.35503 -25.09593 -24.16613 -22.25451 -20.68817 -20.19106 -19.49447 -18.46151 -17.33699 -17.02093 -16.20233 -15.72581 -15.14979 -14.72937 -14.59070 -14.35404 -14.10048 -13.98889 -13.22118 -13.03914 -12.80648 -12.54895 -12.18362 -12.16226 -11.98906 -11.90137 -11.33952 -11.32155 -11.21961 -10.93573 -10.75180 -10.61598 -10.50535 -10.40396 -10.29337 -10.01595 -9.68688 -9.56384 -9.29238 -8.90986 -8.67455 -6.98552 -5.80851 -3.09469 2.11743 2.75936 3.36332 3.41811 3.48186 3.50038 4.14546 4.30226 4.52641 4.55495 4.58337 4.83439 4.93242 5.01263 5.09863 5.24004 5.25950 5.31993 5.40152 5.48343 5.48530 5.57655 5.62045 5.67746 5.72798 5.85461 5.87721 5.94419 5.97494 6.14827 6.17482 6.26333 6.32576 6.46438 6.55734 6.58984 6.63191 6.79673 7.08588 7.69031 7.72726 8.37639 8.40259 9.49224 10.06044 10.40698 11.41677 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028817 B = 0.003360 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.405888 B = 8331.848032 C = 8632.412777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.155 4.155 3 C -0.064 4.064 4 C -0.103 4.103 5 C 0.530 3.470 6 O -0.544 6.544 7 N -0.712 5.712 8 C 0.119 3.881 9 H 0.106 0.894 10 C -0.175 4.175 11 C 0.168 3.832 12 H 0.079 0.921 13 N -0.710 5.710 14 C -0.243 4.243 15 H 0.073 0.927 16 C -0.013 4.013 17 N -0.933 5.933 18 Si 0.907 3.093 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.158 4.158 23 C -0.111 4.111 24 C -0.141 4.141 25 C -0.127 4.127 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.398 0.602 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.681 -11.926 -17.296 22.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.173 4.173 3 C -0.101 4.101 4 C -0.106 4.106 5 C 0.316 3.684 6 O -0.421 6.421 7 N -0.361 5.361 8 C 0.014 3.986 9 H 0.124 0.876 10 C -0.218 4.218 11 C 0.056 3.944 12 H 0.097 0.903 13 N -0.348 5.348 14 C -0.374 4.374 15 H 0.091 0.909 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.738 3.262 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.198 4.198 23 C -0.149 4.149 24 C -0.179 4.179 25 C -0.165 4.165 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.232 0.768 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.710 -12.604 -16.571 22.201 hybrid contribution -0.225 0.963 0.534 1.124 sum 7.485 -11.641 -16.037 21.183 Atomic orbital electron populations 1.23853 0.95895 1.01943 1.00656 1.22831 0.95979 0.98262 1.00221 1.20492 0.97029 0.96224 0.96353 1.22132 0.94948 1.00240 0.93324 1.20281 0.78492 0.82588 0.87038 1.90664 1.62491 1.32371 1.56554 1.46013 1.45684 1.18810 1.25560 1.22474 0.92446 0.99845 0.83846 0.87596 1.24345 1.01459 0.99000 0.96955 1.21356 0.92374 0.88726 0.91974 0.90292 1.42361 1.83702 1.01590 1.07181 1.19370 1.40411 0.92423 0.85225 0.90943 1.24758 1.02604 0.95769 0.97754 1.69670 1.56537 0.99740 1.32183 0.86110 0.77466 0.77992 0.84605 1.20469 1.21844 1.21832 1.23850 0.96344 0.99038 1.00544 1.22821 0.94228 0.96326 1.01516 1.22840 0.99136 0.96396 0.99493 1.22983 0.95790 0.96164 1.01564 0.88518 0.88529 0.87295 0.90722 0.89848 0.76840 0.90304 0.92360 0.78120 0.93520 0.91618 0.90067 0.89131 0.90989 0.89927 0.91057 0.90527 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 14.32 29.01 0.42 -1.36 16 2 C -0.15 -1.48 8.66 -36.03 -0.31 -1.79 16 3 C -0.06 -0.54 5.03 -27.89 -0.14 -0.68 16 4 C -0.10 -1.03 0.78 -154.85 -0.12 -1.16 16 5 C 0.53 7.33 6.20 -10.99 -0.07 7.26 16 6 O -0.54 -9.65 15.82 5.55 0.09 -9.56 16 7 N -0.71 -9.38 5.36 -52.92 -0.28 -9.67 16 8 C 0.12 1.82 4.22 -67.02 -0.28 1.54 16 9 H 0.11 1.73 7.53 -51.93 -0.39 1.34 16 10 C -0.18 -3.13 7.68 -25.82 -0.20 -3.33 16 11 C 0.17 3.31 4.48 -67.11 -0.30 3.01 16 12 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 13 N -0.71 -17.59 5.40 -52.63 -0.28 -17.87 16 14 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 15 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 18 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 C -0.16 -2.51 7.58 -25.91 -0.20 -2.70 16 23 C -0.11 -1.07 6.75 -25.92 -0.17 -1.24 16 24 C -0.14 -1.06 7.73 -25.92 -0.20 -1.26 16 25 C -0.13 -1.09 7.22 -25.92 -0.19 -1.28 16 26 H 0.10 0.88 7.84 -52.49 -0.41 0.46 16 27 H 0.10 0.85 8.06 -52.49 -0.42 0.43 16 28 H 0.11 1.03 7.52 -52.49 -0.39 0.64 16 29 H 0.07 0.60 7.79 -51.93 -0.40 0.20 16 30 H 0.08 0.57 7.31 -51.93 -0.38 0.19 16 31 H 0.40 4.44 8.73 -40.82 -0.36 4.09 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.38 10.01 7.92 -40.82 -0.32 9.69 16 35 H 0.25 7.36 8.31 -40.82 -0.34 7.03 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.27 8.09 -51.93 -0.42 0.85 16 38 H 0.09 1.03 7.73 -51.93 -0.40 0.63 16 39 H 0.07 0.63 7.37 -51.93 -0.38 0.25 16 40 H 0.08 0.51 7.60 -51.93 -0.39 0.11 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 43 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -31.73 353.13 -8.65 -40.38 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -7.18 Total: 11.62 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -2.01 Total: -10.33 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.16 Total: -54.71 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.73 -8.65 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690355836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.836 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds