Wall clock time and date at job start Tue Mar 31 2020 00:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 119.99993 * 2 1 4 4 C 1.52997 * 109.47432 * 125.00070 * 3 2 1 5 5 C 1.50702 * 112.84673 * 298.31652 * 4 3 2 6 6 O 1.21290 * 119.99939 * 113.56045 * 5 4 3 7 7 N 1.34774 * 119.99947 * 293.56160 * 5 4 3 8 8 C 1.46504 * 119.99526 * 174.99678 * 7 5 4 9 9 H 1.08995 * 112.91108 * 336.25240 * 8 7 5 10 10 C 1.53958 * 113.66490 * 107.55219 * 8 7 5 11 11 C 1.53787 * 87.11250 * 139.88790 * 10 8 7 12 12 H 1.08991 * 113.69160 * 89.19617 * 11 10 8 13 13 N 1.46502 * 113.61505 * 220.09266 * 11 10 8 14 14 C 1.36933 * 119.99881 * 252.49644 * 13 11 10 15 15 H 1.08004 * 119.99853 * 359.97438 * 14 13 11 16 16 C 1.38810 * 120.00283 * 179.97438 * 14 13 11 17 17 N 1.31617 * 119.99670 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00200 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47031 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46832 * 120.00573 * 18 16 14 21 21 H 1.48504 * 109.46950 * 240.00453 * 18 16 14 22 22 C 1.53789 * 113.60973 * 204.99863 * 8 7 5 23 23 C 1.53781 * 113.69337 * 69.58135 * 4 3 2 24 24 C 1.53784 * 87.08058 * 89.13170 * 23 4 3 25 25 C 1.53780 * 113.61931 * 167.12057 * 4 3 2 26 26 H 1.08002 * 119.99687 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00130 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.99521 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47559 * 4.99328 * 3 2 1 30 30 H 1.09006 * 109.46949 * 244.99533 * 3 2 1 31 31 H 0.96993 * 120.00125 * 354.99666 * 7 5 4 32 32 H 1.08998 * 113.53684 * 25.34108 * 10 8 7 33 33 H 1.09001 * 113.66722 * 254.45305 * 10 8 7 34 34 H 0.97001 * 120.00305 * 72.49079 * 13 11 10 35 35 H 0.97010 * 119.99893 * 179.97438 * 17 16 14 36 36 H 1.09000 * 113.61393 * 105.47754 * 22 8 7 37 37 H 1.08998 * 113.61221 * 334.64966 * 22 8 7 38 38 H 1.09001 * 113.61868 * 203.67815 * 23 4 3 39 39 H 1.09000 * 113.61608 * 334.58683 * 23 4 3 40 40 H 1.08999 * 113.61659 * 270.88871 * 24 23 4 41 41 H 1.08992 * 113.61551 * 139.97834 * 24 23 4 42 42 H 1.09007 * 113.61196 * 25.35068 * 25 4 3 43 43 H 1.09002 * 113.61455 * 156.15964 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 2.3379 1.2437 2.5146 6 8 2.4932 0.2664 3.2159 7 7 1.5417 2.2497 2.9275 8 6 0.7782 2.1165 4.1707 9 1 0.5987 1.0781 4.4493 10 6 1.3206 2.9796 5.3245 11 6 -0.1441 3.2759 5.6880 12 1 -0.5773 2.5559 6.3821 13 7 -0.3798 4.6652 6.0886 14 6 -0.6239 4.9671 7.4017 15 1 -0.6431 4.1809 8.1420 16 6 -0.8468 6.2835 7.7814 17 7 -0.8238 7.2415 6.8792 18 14 -1.1806 6.6952 9.5727 19 1 -1.1533 5.4494 10.3803 20 1 -0.1378 7.6290 10.0685 21 1 -2.5154 7.3347 9.6931 22 6 -0.4845 2.9933 4.2151 23 6 4.2134 0.3558 1.0360 24 6 4.9653 1.4919 0.3225 25 6 4.0691 2.4686 1.1022 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3586 2.1316 0.0894 30 1 2.6214 1.4025 -0.9314 31 1 1.4741 3.0619 2.4015 32 1 1.8732 3.8571 4.9891 33 1 1.8523 2.4085 6.0856 34 1 -0.3628 5.3713 5.4237 35 1 -0.9799 8.1615 7.1445 36 1 -1.4099 2.4333 4.0806 37 1 -0.4265 3.8749 3.5767 38 1 4.6606 0.0661 1.9869 39 1 3.9969 -0.4964 0.3919 40 1 4.8017 1.5145 -0.7549 41 1 6.0191 1.5554 0.5931 42 1 3.7359 3.3220 0.5115 43 1 4.4756 2.7575 2.0714 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690355836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:02 Heat of formation + Delta-G solvation = 5.623351 kcal Electronic energy + Delta-G solvation = -21740.930107 eV Core-core repulsion = 18593.962796 eV Total energy + Delta-G solvation = -3146.967311 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.75169 -40.05460 -38.40814 -35.77779 -35.18919 -34.16680 -31.83036 -29.35500 -26.80839 -26.55898 -26.45304 -25.67376 -23.64427 -21.81077 -20.98062 -20.83570 -19.49882 -19.07214 -18.10467 -17.58589 -16.54817 -16.46675 -16.19270 -15.86391 -15.50967 -15.17122 -14.96490 -14.77575 -14.56951 -13.89710 -13.57327 -13.32091 -13.29835 -13.16721 -12.91883 -12.84972 -12.76489 -12.24350 -12.17143 -12.07186 -12.01944 -11.98951 -11.75314 -11.51551 -11.44260 -11.13577 -10.89172 -10.52493 -10.16278 -9.94312 -8.99314 -7.96171 -5.24163 1.39965 1.47637 1.48057 1.58097 1.67037 2.27218 2.56830 3.35701 3.39773 3.55230 3.68837 3.78632 3.86803 3.89550 3.95809 4.00810 4.20897 4.25716 4.30778 4.34406 4.60505 4.67273 4.73730 4.81021 4.87020 4.89065 4.89426 4.98327 5.01314 5.12102 5.13150 5.14367 5.16717 5.24141 5.40100 5.49622 5.51840 5.69210 5.76181 5.87916 6.26490 6.64153 7.31266 7.33158 8.08173 8.32249 9.27115 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028817 B = 0.003360 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.405888 B = 8331.848032 C = 8632.412777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.164 4.164 3 C -0.060 4.060 4 C -0.100 4.100 5 C 0.527 3.473 6 O -0.587 6.587 7 N -0.704 5.704 8 C 0.137 3.863 9 H 0.100 0.900 10 C -0.169 4.169 11 C 0.150 3.850 12 H 0.077 0.923 13 N -0.723 5.723 14 C -0.246 4.246 15 H 0.075 0.925 16 C -0.073 4.073 17 N -0.968 5.968 18 Si 0.970 3.030 19 H -0.268 1.268 20 H -0.294 1.294 21 H -0.292 1.292 22 C -0.137 4.137 23 C -0.119 4.119 24 C -0.127 4.127 25 C -0.126 4.126 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.410 0.590 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.376 0.624 35 H 0.251 0.749 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.949 -12.152 -18.837 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.182 4.182 3 C -0.097 4.097 4 C -0.103 4.103 5 C 0.315 3.685 6 O -0.467 6.467 7 N -0.353 5.353 8 C 0.031 3.969 9 H 0.118 0.882 10 C -0.212 4.212 11 C 0.040 3.960 12 H 0.095 0.905 13 N -0.360 5.360 14 C -0.378 4.378 15 H 0.093 0.907 16 C -0.265 4.265 17 N -0.618 5.618 18 Si 0.800 3.200 19 H -0.192 1.192 20 H -0.221 1.221 21 H -0.219 1.219 22 C -0.176 4.176 23 C -0.157 4.157 24 C -0.164 4.164 25 C -0.164 4.164 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.101 0.899 30 H 0.127 0.873 31 H 0.247 0.753 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.208 0.792 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.094 0.906 42 H 0.116 0.884 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.987 -12.864 -18.138 23.628 hybrid contribution -0.277 0.929 1.010 1.400 sum 7.710 -11.935 -17.128 22.255 Atomic orbital electron populations 1.23980 0.96098 1.02356 1.00758 1.22979 0.96173 0.98851 1.00164 1.20544 0.96891 0.95787 0.96442 1.22217 0.95113 1.01387 0.91565 1.21035 0.77809 0.81637 0.88066 1.90646 1.63902 1.34042 1.58142 1.45906 1.45209 1.19453 1.24749 1.22098 0.91956 0.98872 0.83989 0.88241 1.24183 0.99943 0.99090 0.97940 1.21657 0.93742 0.86306 0.94333 0.90530 1.42489 1.84140 1.03313 1.06102 1.19730 1.38875 0.92551 0.86616 0.90733 1.25518 1.03562 0.95837 1.01580 1.69805 1.58313 0.99772 1.33915 0.85118 0.76825 0.77838 0.80262 1.19231 1.22124 1.21907 1.23638 0.97228 0.99369 0.97404 1.22839 0.94558 0.97417 1.00884 1.22830 0.98988 0.94134 1.00430 1.22998 0.95299 0.96661 1.01413 0.88029 0.88368 0.87631 0.89937 0.87327 0.75330 0.91098 0.93236 0.79160 0.93970 0.90047 0.89351 0.91656 0.90244 0.87570 0.90589 0.88384 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.39 14.32 67.78 0.97 -2.42 16 2 C -0.16 -2.82 8.66 25.64 0.22 -2.60 16 3 C -0.06 -0.83 5.03 29.85 0.15 -0.68 16 4 C -0.10 -1.81 0.78 -52.40 -0.04 -1.85 16 5 C 0.53 14.07 6.20 87.66 0.54 14.62 16 6 O -0.59 -20.91 15.82 -3.06 -0.05 -20.96 16 7 N -0.70 -17.59 5.36 -439.73 -2.36 -19.94 16 8 C 0.14 4.07 4.22 45.58 0.19 4.26 16 9 H 0.10 3.19 7.53 -2.39 -0.02 3.17 16 10 C -0.17 -6.03 7.68 31.18 0.24 -5.79 16 11 C 0.15 5.85 4.48 45.52 0.20 6.06 16 12 H 0.08 3.01 8.10 -2.39 -0.02 2.99 16 13 N -0.72 -35.90 5.40 -320.43 -1.73 -37.63 16 14 C -0.25 -13.62 9.97 84.03 0.84 -12.78 16 15 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 16 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 17 N -0.97 -58.44 13.06 21.65 0.28 -58.15 16 18 Si 0.97 46.03 29.55 68.60 2.03 48.05 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 20 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 C -0.14 -4.14 7.58 31.13 0.24 -3.91 16 23 C -0.12 -2.13 6.75 31.12 0.21 -1.92 16 24 C -0.13 -1.54 7.73 31.12 0.24 -1.30 16 25 C -0.13 -1.86 7.22 31.12 0.22 -1.63 16 26 H 0.10 1.64 7.84 -2.91 -0.02 1.61 16 27 H 0.10 1.62 8.06 -2.91 -0.02 1.60 16 28 H 0.11 1.87 7.52 -2.91 -0.02 1.84 16 29 H 0.08 1.05 7.79 -2.39 -0.02 1.03 16 30 H 0.11 1.02 7.31 -2.38 -0.02 1.00 16 31 H 0.41 8.29 8.73 -92.71 -0.81 7.48 16 32 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.38 19.73 7.92 -92.71 -0.73 19.00 16 35 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 36 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.09 2.60 8.09 -2.39 -0.02 2.58 16 38 H 0.06 1.50 7.73 -2.39 -0.02 1.48 16 39 H 0.08 1.28 7.37 -2.39 -0.02 1.26 16 40 H 0.11 0.85 7.60 -2.39 -0.02 0.83 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.10 1.05 8.10 -2.38 -0.02 1.03 16 43 H 0.07 1.30 8.09 -2.39 -0.02 1.28 16 Total: -1.00 -68.62 353.13 2.32 -66.30 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: -0.55 Total: 35.97 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 4.70 Total: -13.64 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -3.80 Total: -115.72 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.05 Total: -20.96 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -68.62 2.32 -66.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690355836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.924 kcal (2) G-P(sol) polarization free energy of solvation -68.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds