Wall clock time and date at job start Tue Mar 31 2020 00:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.47108 * 119.99708 * 2 1 4 4 O 1.21606 * 119.99872 * 180.02562 * 3 2 1 5 5 N 1.34771 * 119.99694 * 0.02562 * 3 2 1 6 6 C 1.46505 * 119.99622 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47212 * 179.97438 * 6 5 3 8 8 H 1.09003 * 112.84890 * 316.19493 * 7 6 5 9 9 C 1.53787 * 113.61418 * 87.49925 * 7 6 5 10 10 C 1.53789 * 87.07916 * 139.98375 * 9 7 6 11 11 H 1.08994 * 113.68853 * 220.00807 * 10 9 7 12 12 N 1.46498 * 113.61404 * 89.11935 * 10 9 7 13 13 C 1.36928 * 120.00238 * 107.50127 * 12 10 9 14 14 H 1.07999 * 120.00273 * 359.97438 * 13 12 10 15 15 C 1.38813 * 120.00424 * 179.97438 * 13 12 10 16 16 N 1.31625 * 119.99703 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00490 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47350 * 89.99772 * 17 15 13 19 19 H 1.48499 * 109.47285 * 210.00436 * 17 15 13 20 20 H 1.48510 * 109.46789 * 329.99912 * 17 15 13 21 21 C 1.53780 * 113.61900 * 184.99939 * 7 6 5 22 22 C 1.32992 * 120.00212 * 180.02562 * 2 1 3 23 23 C 1.51400 * 136.31551 * 179.62578 * 22 2 1 24 24 C 1.53372 * 87.52186 * 206.06072 * 23 22 2 25 25 C 1.51398 * 136.31707 * 0.02562 * 22 2 1 26 26 H 1.08995 * 109.47553 * 90.00389 * 1 2 3 27 27 H 1.09002 * 109.46846 * 209.99979 * 1 2 3 28 28 H 1.08998 * 109.47407 * 329.99289 * 1 2 3 29 29 H 0.96996 * 120.00772 * 359.97438 * 5 3 2 30 30 H 1.09002 * 109.47068 * 299.99729 * 6 5 3 31 31 H 1.09001 * 109.47372 * 59.99816 * 6 5 3 32 32 H 1.08998 * 113.61477 * 254.53206 * 9 7 6 33 33 H 1.08992 * 113.61461 * 25.43734 * 9 7 6 34 34 H 0.97002 * 119.99723 * 287.50356 * 12 10 9 35 35 H 0.96998 * 119.99656 * 180.02562 * 16 15 13 36 36 H 1.09004 * 113.61169 * 334.56803 * 21 7 6 37 37 H 1.09001 * 113.61588 * 105.38140 * 21 7 6 38 38 H 1.09001 * 113.56505 * 320.64307 * 23 22 2 39 39 H 1.09005 * 113.56001 * 91.37466 * 23 22 2 40 40 H 1.09000 * 113.96935 * 220.29462 * 24 23 22 41 41 H 1.08996 * 113.71163 * 88.80414 * 24 23 22 42 42 H 1.09009 * 113.55863 * 268.62471 * 25 22 2 43 43 H 1.08997 * 113.56507 * 39.27783 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.4585 1.2741 -0.0005 5 7 1.5685 2.4411 0.0005 6 6 2.3010 3.7099 0.0000 7 6 1.3067 4.8728 0.0001 8 1 0.4804 4.7232 -0.6949 9 6 0.8602 5.3014 1.4079 10 6 0.9479 6.7532 0.9082 11 1 1.3663 7.4438 1.6403 12 7 -0.2957 7.2438 0.3092 13 6 -1.0645 8.1575 0.9792 14 1 -0.7543 8.5163 1.9495 15 6 -2.2427 8.6228 0.4115 16 7 -2.6211 8.1852 -0.7708 17 14 -3.2911 9.8699 1.3252 18 1 -2.8623 11.2427 0.9555 19 1 -4.7175 9.6811 0.9583 20 1 -3.1267 9.6773 2.7886 21 6 1.9731 6.2532 -0.1233 22 6 2.1720 -1.1517 -0.0005 23 6 3.6250 -1.5770 -0.0075 24 6 3.1709 -2.8813 -0.6745 25 6 1.8139 -2.6227 -0.0016 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 0.5985 2.4411 0.0005 30 1 2.9283 3.7677 0.8895 31 1 2.9270 3.7677 -0.8905 32 1 -0.1526 4.9866 1.6595 33 1 1.5843 5.0633 2.1870 34 1 -0.5746 6.9212 -0.5621 35 1 -3.4441 8.5107 -1.1677 36 1 3.0016 6.2753 0.2373 37 1 1.8601 6.7062 -1.1082 38 1 4.2566 -0.9598 -0.6464 39 1 4.0421 -1.7196 0.9894 40 1 3.6837 -3.7694 -0.3050 41 1 3.1395 -2.8293 -1.7627 42 1 1.7338 -3.0524 0.9970 43 1 0.9597 -2.8628 -0.6346 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691782949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:45 Heat of formation + Delta-G solvation = 23.926970 kcal Electronic energy + Delta-G solvation = -21021.631262 eV Core-core repulsion = 17875.457656 eV Total energy + Delta-G solvation = -3146.173607 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.09366 -38.87850 -38.12081 -34.64412 -33.51423 -32.86661 -30.12954 -27.39975 -26.77036 -25.73734 -25.05229 -23.89773 -23.00645 -21.68520 -20.56360 -18.73370 -18.03861 -17.25865 -16.55363 -16.11499 -15.81351 -15.26450 -14.87648 -14.50129 -14.14737 -14.08799 -13.54467 -13.45569 -12.97507 -12.88175 -12.68328 -12.62358 -12.25512 -12.16520 -11.91326 -11.81663 -11.37966 -11.21428 -11.03858 -10.85806 -10.70566 -10.47542 -10.17942 -10.02352 -9.69957 -9.67127 -9.42230 -9.12026 -8.90637 -8.80781 -7.01145 -5.81959 -3.10903 1.23287 3.22920 3.27831 3.41022 3.46396 3.47869 4.17449 4.28170 4.47969 4.54767 4.80104 4.83531 5.04541 5.07439 5.11565 5.24868 5.30110 5.37871 5.42603 5.44564 5.49015 5.55506 5.64606 5.66191 5.73317 5.83717 5.87671 5.96173 5.97880 6.09297 6.14334 6.22276 6.37677 6.47240 6.51297 6.61061 6.74773 6.91124 7.04444 7.61533 7.67969 8.29947 8.37343 9.47961 10.05658 10.39938 11.40532 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033435 B = 0.002819 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.255450 B = 9928.968781 C =10459.400244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.163 4.163 3 C 0.553 3.447 4 O -0.547 6.547 5 N -0.721 5.721 6 C 0.132 3.868 7 C -0.120 4.120 8 H 0.093 0.907 9 C -0.168 4.168 10 C 0.167 3.833 11 H 0.062 0.938 12 N -0.706 5.706 13 C -0.242 4.242 14 H 0.072 0.928 15 C -0.013 4.013 16 N -0.933 5.933 17 Si 0.909 3.091 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C -0.148 4.148 22 C -0.075 4.075 23 C -0.102 4.102 24 C -0.142 4.142 25 C -0.105 4.105 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.402 0.598 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.914 -20.505 0.949 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.166 4.166 3 C 0.341 3.659 4 O -0.427 6.427 5 N -0.372 5.372 6 C 0.008 3.992 7 C -0.139 4.139 8 H 0.111 0.889 9 C -0.209 4.209 10 C 0.055 3.945 11 H 0.080 0.920 12 N -0.344 5.344 13 C -0.373 4.373 14 H 0.090 0.910 15 C -0.209 4.209 16 N -0.581 5.581 17 Si 0.740 3.260 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.207 1.207 21 C -0.187 4.187 22 C -0.077 4.077 23 C -0.138 4.138 24 C -0.179 4.179 25 C -0.142 4.142 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.238 0.762 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.219 0.781 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.117 0.883 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.667 -20.318 1.056 22.525 hybrid contribution -1.278 0.560 0.105 1.400 sum 8.389 -19.758 1.161 21.497 Atomic orbital electron populations 1.20695 0.90428 1.03077 1.02595 1.20516 0.95918 0.91419 1.08782 1.18244 0.87189 0.83914 0.76507 1.90748 1.13562 1.87843 1.50550 1.46018 1.10699 1.05751 1.74721 1.21466 0.94522 0.81506 1.01661 1.22715 0.98189 0.93183 0.99792 0.88925 1.23886 1.00844 1.01673 0.94513 1.21057 0.87594 0.92101 0.93745 0.91969 1.42170 1.21171 1.49715 1.21382 1.19292 1.01351 1.15968 1.00664 0.90993 1.24767 0.98480 1.00673 0.97016 1.69664 1.24811 1.47119 1.16514 0.86166 0.79724 0.81240 0.78918 1.21657 1.21761 1.20707 1.23442 0.98937 0.94941 1.01424 1.23199 0.98041 0.93644 0.92782 1.22155 0.94110 0.95811 1.01774 1.22709 0.96671 0.98184 1.00383 1.22280 0.98496 0.91741 1.01703 0.91007 0.91239 0.91253 0.76242 0.91615 0.91902 0.91527 0.91407 0.78117 0.93444 0.90474 0.91338 0.89674 0.88659 0.90538 0.89816 0.88344 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.57 36.01 0.34 -0.63 16 2 C -0.16 -1.87 6.00 -102.84 -0.62 -2.48 16 3 C 0.55 7.87 7.75 -12.66 -0.10 7.77 16 4 O -0.55 -9.42 15.15 5.27 0.08 -9.34 16 5 N -0.72 -9.45 5.50 -61.49 -0.34 -9.79 16 6 C 0.13 1.84 5.51 -4.04 -0.02 1.82 16 7 C -0.12 -1.82 3.63 -89.81 -0.33 -2.15 16 8 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 9 C -0.17 -2.81 7.43 -25.91 -0.19 -3.01 16 10 C 0.17 3.26 4.56 -67.12 -0.31 2.96 16 11 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 12 N -0.71 -17.34 5.31 -52.64 -0.28 -17.62 16 13 C -0.24 -6.62 9.97 -15.06 -0.15 -6.77 16 14 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 15 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 16 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 17 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C -0.15 -2.39 7.39 -25.92 -0.19 -2.58 16 22 C -0.07 -0.78 6.60 -100.49 -0.66 -1.44 16 23 C -0.10 -1.01 6.99 -27.57 -0.19 -1.20 16 24 C -0.14 -1.03 8.17 -26.21 -0.21 -1.25 16 25 C -0.11 -0.77 7.71 -27.42 -0.21 -0.98 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.52 7.91 -51.93 -0.41 0.11 16 28 H 0.07 0.59 6.70 -51.93 -0.35 0.24 16 29 H 0.40 4.64 6.57 -40.82 -0.27 4.37 16 30 H 0.07 0.95 7.84 -51.93 -0.41 0.54 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.03 7.90 -51.93 -0.41 0.62 16 34 H 0.38 9.98 7.90 -40.82 -0.32 9.66 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.08 1.00 7.49 -51.93 -0.39 0.61 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 352.74 15.07 5.32 5.32 Total: -1.00 -31.47 352.74 -9.63 -41.10 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -7.17 Total: 10.68 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -2.94 Total: -10.42 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.11 Total: -54.43 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.08 Total: -9.34 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.47 -9.63 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691782949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.026 kcal (2) G-P(sol) polarization free energy of solvation -31.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds