Wall clock time and date at job start Tue Mar 31 2020 00:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.47108 * 119.99708 * 2 1 4 4 O 1.21606 * 119.99872 * 180.02562 * 3 2 1 5 5 N 1.34771 * 119.99694 * 0.02562 * 3 2 1 6 6 C 1.46505 * 119.99622 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47212 * 179.97438 * 6 5 3 8 8 H 1.09003 * 112.84890 * 316.19493 * 7 6 5 9 9 C 1.53787 * 113.61418 * 87.49925 * 7 6 5 10 10 C 1.53789 * 87.07916 * 139.98375 * 9 7 6 11 11 H 1.08994 * 113.68853 * 220.00807 * 10 9 7 12 12 N 1.46498 * 113.61404 * 89.11935 * 10 9 7 13 13 C 1.36928 * 120.00238 * 107.50127 * 12 10 9 14 14 H 1.07999 * 120.00273 * 359.97438 * 13 12 10 15 15 C 1.38813 * 120.00424 * 179.97438 * 13 12 10 16 16 N 1.31625 * 119.99703 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00490 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47350 * 89.99772 * 17 15 13 19 19 H 1.48499 * 109.47285 * 210.00436 * 17 15 13 20 20 H 1.48510 * 109.46789 * 329.99912 * 17 15 13 21 21 C 1.53780 * 113.61900 * 184.99939 * 7 6 5 22 22 C 1.32992 * 120.00212 * 180.02562 * 2 1 3 23 23 C 1.51400 * 136.31551 * 179.62578 * 22 2 1 24 24 C 1.53372 * 87.52186 * 206.06072 * 23 22 2 25 25 C 1.51398 * 136.31707 * 0.02562 * 22 2 1 26 26 H 1.08995 * 109.47553 * 90.00389 * 1 2 3 27 27 H 1.09002 * 109.46846 * 209.99979 * 1 2 3 28 28 H 1.08998 * 109.47407 * 329.99289 * 1 2 3 29 29 H 0.96996 * 120.00772 * 359.97438 * 5 3 2 30 30 H 1.09002 * 109.47068 * 299.99729 * 6 5 3 31 31 H 1.09001 * 109.47372 * 59.99816 * 6 5 3 32 32 H 1.08998 * 113.61477 * 254.53206 * 9 7 6 33 33 H 1.08992 * 113.61461 * 25.43734 * 9 7 6 34 34 H 0.97002 * 119.99723 * 287.50356 * 12 10 9 35 35 H 0.96998 * 119.99656 * 180.02562 * 16 15 13 36 36 H 1.09004 * 113.61169 * 334.56803 * 21 7 6 37 37 H 1.09001 * 113.61588 * 105.38140 * 21 7 6 38 38 H 1.09001 * 113.56505 * 320.64307 * 23 22 2 39 39 H 1.09005 * 113.56001 * 91.37466 * 23 22 2 40 40 H 1.09000 * 113.96935 * 220.29462 * 24 23 22 41 41 H 1.08996 * 113.71163 * 88.80414 * 24 23 22 42 42 H 1.09009 * 113.55863 * 268.62471 * 25 22 2 43 43 H 1.08997 * 113.56507 * 39.27783 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.4585 1.2741 -0.0005 5 7 1.5685 2.4411 0.0005 6 6 2.3010 3.7099 0.0000 7 6 1.3067 4.8728 0.0001 8 1 0.4804 4.7232 -0.6949 9 6 0.8602 5.3014 1.4079 10 6 0.9479 6.7532 0.9082 11 1 1.3663 7.4438 1.6403 12 7 -0.2957 7.2438 0.3092 13 6 -1.0645 8.1575 0.9792 14 1 -0.7543 8.5163 1.9495 15 6 -2.2427 8.6228 0.4115 16 7 -2.6211 8.1852 -0.7708 17 14 -3.2911 9.8699 1.3252 18 1 -2.8623 11.2427 0.9555 19 1 -4.7175 9.6811 0.9583 20 1 -3.1267 9.6773 2.7886 21 6 1.9731 6.2532 -0.1233 22 6 2.1720 -1.1517 -0.0005 23 6 3.6250 -1.5770 -0.0075 24 6 3.1709 -2.8813 -0.6745 25 6 1.8139 -2.6227 -0.0016 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 0.5985 2.4411 0.0005 30 1 2.9283 3.7677 0.8895 31 1 2.9270 3.7677 -0.8905 32 1 -0.1526 4.9866 1.6595 33 1 1.5843 5.0633 2.1870 34 1 -0.5746 6.9212 -0.5621 35 1 -3.4441 8.5107 -1.1677 36 1 3.0016 6.2753 0.2373 37 1 1.8601 6.7062 -1.1082 38 1 4.2566 -0.9598 -0.6464 39 1 4.0421 -1.7196 0.9894 40 1 3.6837 -3.7694 -0.3050 41 1 3.1395 -2.8293 -1.7627 42 1 1.7338 -3.0524 0.9970 43 1 0.9597 -2.8628 -0.6346 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691782949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:44 Heat of formation + Delta-G solvation = 4.795026 kcal Electronic energy + Delta-G solvation = -21022.460886 eV Core-core repulsion = 17875.457656 eV Total energy + Delta-G solvation = -3147.003230 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.12905 -40.08846 -39.12554 -36.01471 -35.07180 -33.92634 -32.00266 -28.74912 -27.47615 -26.44770 -26.41062 -25.75481 -24.08423 -22.96134 -21.49581 -20.02716 -19.41801 -18.98961 -17.43141 -17.22412 -16.72430 -16.59916 -16.21280 -15.79952 -15.73371 -15.19958 -14.80122 -14.74487 -14.46316 -13.91406 -13.73233 -13.32945 -13.31742 -13.27595 -12.94575 -12.90870 -12.86191 -12.64474 -12.47321 -12.15644 -12.06581 -11.89118 -11.58595 -11.48969 -11.37364 -10.98425 -10.85948 -10.60337 -10.15559 -9.72209 -9.00374 -7.95480 -5.23824 0.35979 1.48198 1.49402 1.57827 2.21167 2.25378 2.55800 3.36722 3.41199 3.57820 3.70897 3.78078 3.81594 3.86057 4.01896 4.14264 4.24233 4.31482 4.39102 4.42005 4.67294 4.72864 4.74431 4.76469 4.79446 4.83420 4.91780 4.97756 4.99580 5.04349 5.08245 5.10668 5.28181 5.34444 5.35894 5.36633 5.49091 5.54814 5.65177 5.73883 6.28224 6.57445 7.22954 7.33205 8.10041 8.32680 9.27852 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033435 B = 0.002819 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.255450 B = 9928.968781 C =10459.400244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.185 4.185 3 C 0.546 3.454 4 O -0.585 6.585 5 N -0.716 5.716 6 C 0.141 3.859 7 C -0.103 4.103 8 H 0.081 0.919 9 C -0.153 4.153 10 C 0.145 3.855 11 H 0.060 0.940 12 N -0.720 5.720 13 C -0.242 4.242 14 H 0.076 0.924 15 C -0.076 4.076 16 N -0.969 5.969 17 Si 0.973 3.027 18 H -0.288 1.288 19 H -0.296 1.296 20 H -0.270 1.270 21 C -0.134 4.134 22 C -0.080 4.080 23 C -0.114 4.114 24 C -0.132 4.132 25 C -0.094 4.094 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.410 0.590 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.374 0.626 35 H 0.251 0.749 36 H 0.105 0.895 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.117 0.883 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.054 -22.100 1.903 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.188 4.188 3 C 0.337 3.663 4 O -0.468 6.468 5 N -0.367 5.367 6 C 0.017 3.983 7 C -0.122 4.122 8 H 0.100 0.900 9 C -0.193 4.193 10 C 0.035 3.965 11 H 0.079 0.921 12 N -0.358 5.358 13 C -0.374 4.374 14 H 0.094 0.906 15 C -0.268 4.268 16 N -0.620 5.620 17 Si 0.802 3.198 18 H -0.215 1.215 19 H -0.222 1.222 20 H -0.194 1.194 21 C -0.174 4.174 22 C -0.082 4.082 23 C -0.151 4.151 24 C -0.169 4.169 25 C -0.130 4.130 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.247 0.753 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.206 0.794 35 H 0.060 0.940 36 H 0.123 0.877 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.135 0.865 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.828 -21.925 2.043 24.113 hybrid contribution -1.185 1.019 -0.164 1.571 sum 8.643 -20.905 1.879 22.700 Atomic orbital electron populations 1.20704 0.88504 1.03853 1.03221 1.20581 0.97193 0.90300 1.10689 1.18782 0.86959 0.84968 0.75630 1.90724 1.15170 1.88413 1.52471 1.45976 1.11100 1.05364 1.74309 1.21287 0.93997 0.81396 1.01592 1.22501 0.97868 0.93375 0.98437 0.90043 1.23712 1.00604 0.99104 0.95921 1.21373 0.86736 0.93360 0.95049 0.92136 1.42300 1.22646 1.49750 1.21081 1.19670 1.01429 1.15607 1.00696 0.90563 1.25556 1.00071 1.03103 0.98048 1.69813 1.25190 1.48851 1.18122 0.85147 0.77593 0.78788 0.78276 1.21506 1.22227 1.19444 1.23349 0.99457 0.94674 0.99897 1.23701 0.98600 0.95183 0.90699 1.22281 0.93716 0.97225 1.01905 1.22693 0.96579 0.97334 1.00291 1.22340 0.98899 0.88835 1.02956 0.90416 0.89574 0.91357 0.75309 0.91548 0.92125 0.93242 0.89139 0.79351 0.94005 0.87700 0.92338 0.92350 0.88198 0.88471 0.89818 0.86498 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.57 71.24 0.68 -0.99 16 2 C -0.18 -4.05 6.00 -18.70 -0.11 -4.16 16 3 C 0.55 15.42 7.75 86.57 0.67 16.09 16 4 O -0.59 -20.39 15.15 -4.05 -0.06 -20.45 16 5 N -0.72 -18.34 5.50 -466.71 -2.57 -20.91 16 6 C 0.14 3.79 5.51 86.38 0.48 4.27 16 7 C -0.10 -3.03 3.63 -10.27 -0.04 -3.07 16 8 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 9 C -0.15 -4.94 7.43 31.13 0.23 -4.71 16 10 C 0.14 5.56 4.56 45.52 0.21 5.77 16 11 H 0.06 2.32 8.10 -2.39 -0.02 2.31 16 12 N -0.72 -35.65 5.31 -320.45 -1.70 -37.35 16 13 C -0.24 -13.30 9.97 84.04 0.84 -12.47 16 14 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 15 C -0.08 -4.29 5.50 84.86 0.47 -3.83 16 16 N -0.97 -58.64 13.06 21.65 0.28 -58.36 16 17 Si 0.97 45.70 29.55 68.60 2.03 47.73 16 18 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 19 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 C -0.13 -4.19 7.39 31.12 0.23 -3.96 16 22 C -0.08 -1.56 6.60 -17.18 -0.11 -1.67 16 23 C -0.11 -2.19 6.99 30.05 0.21 -1.98 16 24 C -0.13 -1.62 8.17 30.93 0.25 -1.37 16 25 C -0.09 -1.09 7.71 30.15 0.23 -0.86 16 26 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.09 1.06 7.91 -2.39 -0.02 1.04 16 28 H 0.07 1.07 6.70 -2.39 -0.02 1.05 16 29 H 0.41 9.16 6.57 -92.71 -0.61 8.55 16 30 H 0.07 1.81 7.84 -2.39 -0.02 1.80 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.09 2.54 7.90 -2.39 -0.02 2.52 16 34 H 0.37 19.84 7.90 -92.71 -0.73 19.11 16 35 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.10 2.71 8.10 -2.38 -0.02 2.69 16 37 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.06 1.42 7.49 -2.39 -0.02 1.41 16 39 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -68.42 352.74 1.88 -66.54 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: -0.34 Total: 35.74 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 4.23 Total: -12.94 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -3.99 Total: -116.61 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.06 Total: -20.45 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -68.42 1.88 -66.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691782949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.336 kcal (2) G-P(sol) polarization free energy of solvation -68.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds