Wall clock time and date at job start Tue Mar 31 2020 00:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50706 * 120.00171 * 2 1 4 4 C 1.53000 * 109.46735 * 125.00050 * 3 2 1 5 5 C 1.50703 * 109.46912 * 180.02562 * 4 3 2 6 6 O 1.21278 * 119.99985 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00161 * 180.02562 * 5 4 3 8 8 C 1.46883 * 120.46346 * 359.71886 * 7 5 4 9 9 C 1.52856 * 109.02098 * 235.48957 * 8 7 5 10 10 C 1.52669 * 109.17335 * 307.82331 * 9 8 7 11 11 C 1.53491 * 113.62291 * 188.99410 * 10 9 8 12 12 N 1.47665 * 85.98810 * 137.70223 * 11 10 9 13 13 C 1.36938 * 134.45600 * 155.71366 * 12 11 10 14 14 H 1.08001 * 119.99745 * 179.97438 * 13 12 11 15 15 C 1.38810 * 120.00042 * 359.95366 * 13 12 11 16 16 N 1.31618 * 119.99811 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00121 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46991 * 90.00097 * 17 15 13 19 19 H 1.48496 * 109.46861 * 210.00301 * 17 15 13 20 20 H 1.48499 * 109.47005 * 330.00197 * 17 15 13 21 21 C 1.47668 * 91.08853 * 335.68125 * 12 11 10 22 22 C 1.52667 * 113.18940 * 57.45945 * 10 9 8 23 23 C 1.46881 * 120.46702 * 180.02562 * 7 5 4 24 24 H 1.07994 * 120.00018 * 179.97438 * 1 2 3 25 25 H 1.08006 * 119.99900 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00145 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.46797 * 5.00398 * 3 2 1 28 28 H 1.08992 * 109.47518 * 245.00395 * 3 2 1 29 29 H 1.09002 * 109.47398 * 300.00410 * 4 3 2 30 30 H 1.09001 * 109.47194 * 60.00591 * 4 3 2 31 31 H 1.09006 * 109.58944 * 355.31958 * 8 7 5 32 32 H 1.09000 * 109.59059 * 115.74922 * 8 7 5 33 33 H 1.08995 * 109.61045 * 187.83967 * 9 8 7 34 34 H 1.08999 * 109.38476 * 67.66187 * 9 8 7 35 35 H 1.08994 * 113.78742 * 251.97433 * 11 10 9 36 36 H 1.09003 * 113.78501 * 23.43526 * 11 10 9 37 37 H 0.96999 * 120.00163 * 180.02562 * 16 15 13 38 38 H 1.08997 * 113.79132 * 270.05059 * 21 12 11 39 39 H 1.08996 * 113.79088 * 138.58032 * 21 12 11 40 40 H 1.09006 * 109.53327 * 182.51919 * 22 10 9 41 41 H 1.08997 * 109.53294 * 62.29531 * 22 10 9 42 42 H 1.08997 * 109.58548 * 244.25686 * 23 7 5 43 43 H 1.08996 * 109.58668 * 4.68632 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7882 2.6383 1.1821 6 8 3.5698 3.4647 0.3217 7 7 4.7053 2.8870 2.1379 8 6 4.9743 1.8955 3.1877 9 6 4.7801 2.5519 4.5544 10 6 5.6033 3.8362 4.6154 11 6 5.6587 4.4654 6.0143 12 7 7.0908 4.6979 5.7396 13 6 8.0252 5.5839 6.2056 14 1 9.0384 5.5456 5.8336 15 6 7.6701 6.5314 7.1559 16 7 6.4354 6.5779 7.6093 17 14 8.9449 7.7395 7.7921 18 1 8.9428 8.9557 6.9402 19 1 8.6167 8.1143 9.1910 20 1 10.2886 7.1086 7.7510 21 6 7.1118 3.5918 4.7615 22 6 5.2498 4.8297 3.5115 23 6 5.4448 4.1560 2.1484 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4027 -0.9313 29 1 2.4773 1.2354 2.1130 30 1 3.7401 0.5065 1.0920 31 1 4.2842 1.0580 3.0849 32 1 6.0006 1.5390 3.0993 33 1 5.1102 1.8698 5.3380 34 1 3.7254 2.7879 4.6958 35 1 5.0746 5.3808 6.1081 36 1 5.4754 3.7572 6.8225 37 1 6.1871 7.2402 8.2731 38 1 7.3602 2.6242 5.1974 39 1 7.6824 3.8131 3.8597 40 1 5.9004 5.7014 3.5836 41 1 4.2104 5.1396 3.6191 42 1 6.5049 3.9625 1.9850 43 1 5.0645 4.8071 1.3614 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698807510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:23 Heat of formation + Delta-G solvation = 29.720771 kcal Electronic energy + Delta-G solvation = -22043.449948 eV Core-core repulsion = 18897.527579 eV Total energy + Delta-G solvation = -3145.922369 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.34805 -38.77059 -35.89819 -35.43181 -32.52023 -31.61382 -30.66835 -30.00970 -26.88980 -25.15805 -24.72088 -23.49835 -22.63678 -21.16623 -20.03763 -19.31323 -17.62701 -16.74138 -16.63239 -15.96706 -15.75449 -14.99281 -14.81462 -14.63555 -14.15239 -13.82441 -13.74196 -13.57680 -13.04280 -12.69771 -12.55100 -12.34017 -12.14703 -11.98428 -11.69814 -11.27135 -11.22905 -11.09401 -11.00831 -10.84873 -10.82125 -10.35541 -10.15015 -9.81610 -9.70111 -9.56917 -9.46150 -9.33339 -8.77651 -8.40512 -6.84613 -5.74983 -3.06691 2.02352 2.69929 3.12534 3.39556 3.44445 3.46234 4.42549 4.46925 4.70630 4.87599 4.93083 5.02432 5.05685 5.09804 5.23657 5.30634 5.36343 5.41241 5.50511 5.57769 5.62238 5.71151 5.76485 5.89048 5.94174 5.96582 5.98588 6.20404 6.28844 6.31849 6.38431 6.46166 6.53431 6.63607 6.65910 6.82070 6.89280 7.25010 7.39114 7.52817 7.60159 8.00704 8.25612 9.06870 9.73034 10.63316 11.41977 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043760 B = 0.003368 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.694335 B = 8310.862079 C = 8453.654231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C -0.080 4.080 4 C -0.135 4.135 5 C 0.511 3.489 6 O -0.550 6.550 7 N -0.606 5.606 8 C 0.109 3.891 9 C -0.119 4.119 10 C -0.109 4.109 11 C 0.173 3.827 12 N -0.609 5.609 13 C -0.221 4.221 14 H 0.078 0.922 15 C -0.008 4.008 16 N -0.921 5.921 17 Si 0.910 3.090 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.126 3.874 22 C -0.096 4.096 23 C 0.112 3.888 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.024 0.976 37 H 0.253 0.747 38 H 0.031 0.969 39 H 0.040 0.960 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.196 -13.786 -11.707 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.117 4.117 4 C -0.175 4.175 5 C 0.300 3.700 6 O -0.429 6.429 7 N -0.339 5.339 8 C -0.014 4.014 9 C -0.158 4.158 10 C -0.110 4.110 11 C 0.048 3.952 12 N -0.335 5.335 13 C -0.349 4.349 14 H 0.096 0.904 15 C -0.205 4.205 16 N -0.568 5.568 17 Si 0.740 3.260 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.208 1.208 21 C 0.000 4.000 22 C -0.134 4.134 23 C -0.010 4.010 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.126 0.874 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.165 -13.064 -11.950 19.497 hybrid contribution 0.795 0.496 0.779 1.218 sum -7.370 -12.569 -11.172 18.360 Atomic orbital electron populations 1.23881 0.96008 1.01859 1.01380 1.22990 0.96089 0.98389 0.99708 1.20514 0.97848 0.95300 0.98068 1.21644 0.98920 0.95927 1.00995 1.20668 0.79429 0.88926 0.80998 1.90672 1.66004 1.48512 1.37688 1.48157 1.39527 1.18779 1.27414 1.21695 1.01527 0.90623 0.87547 1.21751 1.00744 0.97671 0.95678 1.22391 0.95659 0.94333 0.98634 1.22232 0.86324 0.97186 0.89478 1.45954 1.07837 1.32766 1.46948 1.19007 0.90755 1.06926 1.18219 0.90432 1.24760 0.96713 0.99634 0.99364 1.69815 1.16533 1.37155 1.33335 0.86157 0.80470 0.81269 0.78086 1.21569 1.21705 1.20776 1.22587 0.92824 0.91688 0.92857 1.21472 1.01783 0.98289 0.91851 1.21677 0.95678 0.84598 0.99002 0.88577 0.88514 0.87374 0.90746 0.90292 0.88800 0.88933 0.90222 0.91196 0.90643 0.91818 0.91023 0.95784 0.93720 0.95184 0.94194 0.89528 0.92196 0.91549 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.47 14.32 29.01 0.42 -1.06 16 2 C -0.15 -1.21 9.52 -36.02 -0.34 -1.56 16 3 C -0.08 -0.76 4.95 -27.88 -0.14 -0.90 16 4 C -0.13 -1.27 4.02 -27.88 -0.11 -1.38 16 5 C 0.51 6.89 7.69 -10.98 -0.08 6.80 16 6 O -0.55 -9.38 15.37 5.56 0.09 -9.30 16 7 N -0.61 -8.04 2.95 -172.98 -0.51 -8.55 16 8 C 0.11 1.21 6.19 -3.91 -0.02 1.18 16 9 C -0.12 -1.61 5.24 -26.98 -0.14 -1.75 16 10 C -0.11 -1.91 0.77 -154.42 -0.12 -2.03 16 11 C 0.17 3.96 6.64 -3.16 -0.02 3.94 16 12 N -0.61 -15.24 3.53 -179.75 -0.64 -15.88 16 13 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 14 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 15 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 16 N -0.92 -27.22 11.39 55.49 0.63 -26.59 16 17 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.13 2.47 7.73 -3.14 -0.02 2.44 16 22 C -0.10 -1.64 5.21 -26.75 -0.14 -1.78 16 23 C 0.11 1.68 6.30 -3.68 -0.02 1.66 16 24 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 25 H 0.10 0.73 7.84 -52.48 -0.41 0.32 16 26 H 0.11 0.71 8.06 -52.49 -0.42 0.29 16 27 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 28 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 29 H 0.09 0.78 7.71 -51.93 -0.40 0.38 16 30 H 0.09 0.69 7.91 -51.93 -0.41 0.28 16 31 H 0.08 0.66 5.89 -51.93 -0.31 0.35 16 32 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 33 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 36 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 37 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 39 H 0.04 0.76 7.41 -51.93 -0.38 0.37 16 40 H 0.09 1.71 8.01 -51.93 -0.42 1.30 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 0.97 7.49 -51.93 -0.39 0.58 16 43 H 0.09 1.38 6.98 -51.93 -0.36 1.02 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -32.10 342.00 -8.50 -40.60 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -7.19 Total: -1.51 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -1.01 Total: -1.08 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.51 Total: -51.01 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.10 -8.50 -40.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698807510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.320 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds