Wall clock time and date at job start Tue Mar 31 2020 00:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50706 * 120.00171 * 2 1 4 4 C 1.53000 * 109.46735 * 125.00050 * 3 2 1 5 5 C 1.50703 * 109.46912 * 180.02562 * 4 3 2 6 6 O 1.21278 * 119.99985 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00161 * 180.02562 * 5 4 3 8 8 C 1.46883 * 120.46346 * 359.71886 * 7 5 4 9 9 C 1.52856 * 109.02098 * 235.48957 * 8 7 5 10 10 C 1.52669 * 109.17335 * 307.82331 * 9 8 7 11 11 C 1.53491 * 113.62291 * 188.99410 * 10 9 8 12 12 N 1.47665 * 85.98810 * 137.70223 * 11 10 9 13 13 C 1.36938 * 134.45600 * 155.71366 * 12 11 10 14 14 H 1.08001 * 119.99745 * 179.97438 * 13 12 11 15 15 C 1.38810 * 120.00042 * 359.95366 * 13 12 11 16 16 N 1.31618 * 119.99811 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00121 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46991 * 90.00097 * 17 15 13 19 19 H 1.48496 * 109.46861 * 210.00301 * 17 15 13 20 20 H 1.48499 * 109.47005 * 330.00197 * 17 15 13 21 21 C 1.47668 * 91.08853 * 335.68125 * 12 11 10 22 22 C 1.52667 * 113.18940 * 57.45945 * 10 9 8 23 23 C 1.46881 * 120.46702 * 180.02562 * 7 5 4 24 24 H 1.07994 * 120.00018 * 179.97438 * 1 2 3 25 25 H 1.08006 * 119.99900 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00145 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.46797 * 5.00398 * 3 2 1 28 28 H 1.08992 * 109.47518 * 245.00395 * 3 2 1 29 29 H 1.09002 * 109.47398 * 300.00410 * 4 3 2 30 30 H 1.09001 * 109.47194 * 60.00591 * 4 3 2 31 31 H 1.09006 * 109.58944 * 355.31958 * 8 7 5 32 32 H 1.09000 * 109.59059 * 115.74922 * 8 7 5 33 33 H 1.08995 * 109.61045 * 187.83967 * 9 8 7 34 34 H 1.08999 * 109.38476 * 67.66187 * 9 8 7 35 35 H 1.08994 * 113.78742 * 251.97433 * 11 10 9 36 36 H 1.09003 * 113.78501 * 23.43526 * 11 10 9 37 37 H 0.96999 * 120.00163 * 180.02562 * 16 15 13 38 38 H 1.08997 * 113.79132 * 270.05059 * 21 12 11 39 39 H 1.08996 * 113.79088 * 138.58032 * 21 12 11 40 40 H 1.09006 * 109.53327 * 182.51919 * 22 10 9 41 41 H 1.08997 * 109.53294 * 62.29531 * 22 10 9 42 42 H 1.08997 * 109.58548 * 244.25686 * 23 7 5 43 43 H 1.08996 * 109.58668 * 4.68632 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7882 2.6383 1.1821 6 8 3.5698 3.4647 0.3217 7 7 4.7053 2.8870 2.1379 8 6 4.9743 1.8955 3.1877 9 6 4.7801 2.5519 4.5544 10 6 5.6033 3.8362 4.6154 11 6 5.6587 4.4654 6.0143 12 7 7.0908 4.6979 5.7396 13 6 8.0252 5.5839 6.2056 14 1 9.0384 5.5456 5.8336 15 6 7.6701 6.5314 7.1559 16 7 6.4354 6.5779 7.6093 17 14 8.9449 7.7395 7.7921 18 1 8.9428 8.9557 6.9402 19 1 8.6167 8.1143 9.1910 20 1 10.2886 7.1086 7.7510 21 6 7.1118 3.5918 4.7615 22 6 5.2498 4.8297 3.5115 23 6 5.4448 4.1560 2.1484 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4027 -0.9313 29 1 2.4773 1.2354 2.1130 30 1 3.7401 0.5065 1.0920 31 1 4.2842 1.0580 3.0849 32 1 6.0006 1.5390 3.0993 33 1 5.1102 1.8698 5.3380 34 1 3.7254 2.7879 4.6958 35 1 5.0746 5.3808 6.1081 36 1 5.4754 3.7572 6.8225 37 1 6.1871 7.2402 8.2731 38 1 7.3602 2.6242 5.1974 39 1 7.6824 3.8131 3.8597 40 1 5.9004 5.7014 3.5836 41 1 4.2104 5.1396 3.6191 42 1 6.5049 3.9625 1.9850 43 1 5.0645 4.8071 1.3614 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698807510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:22 Heat of formation + Delta-G solvation = 10.665273 kcal Electronic energy + Delta-G solvation = -22044.276256 eV Core-core repulsion = 18897.527579 eV Total energy + Delta-G solvation = -3146.748677 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.56924 -40.14572 -37.12353 -36.22767 -34.41156 -32.70896 -32.02812 -31.06594 -28.65439 -26.76166 -25.84846 -24.82946 -23.82593 -22.76862 -20.67986 -20.44132 -18.84331 -18.69312 -17.81132 -16.89201 -16.83984 -16.76509 -16.10155 -15.79770 -15.55599 -15.14145 -14.98005 -14.76913 -14.12616 -14.02190 -13.76203 -13.66056 -13.35670 -13.12598 -12.91496 -12.87596 -12.79476 -12.63233 -12.18740 -12.11522 -11.94709 -11.83037 -11.65298 -11.52845 -11.19033 -11.02057 -10.81113 -10.68683 -10.16108 -9.56073 -8.86582 -7.88737 -5.20542 1.43797 1.44609 1.45551 1.53761 1.68579 2.11447 2.47949 3.32068 3.43457 3.56990 3.64344 3.97047 3.99189 4.05514 4.19129 4.24702 4.31641 4.40012 4.46265 4.51522 4.62916 4.71943 4.75934 4.78369 4.85222 4.91794 4.96190 5.00608 5.07107 5.13250 5.15935 5.22752 5.27317 5.30386 5.36946 5.57576 5.61305 5.78024 5.81190 5.96967 5.98044 6.51572 6.94798 7.22887 7.63899 8.61199 9.27992 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043760 B = 0.003368 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.694335 B = 8310.862079 C = 8453.654231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C -0.079 4.079 4 C -0.126 4.126 5 C 0.506 3.494 6 O -0.594 6.594 7 N -0.607 5.607 8 C 0.111 3.889 9 C -0.114 4.114 10 C -0.083 4.083 11 C 0.167 3.833 12 N -0.640 5.640 13 C -0.229 4.229 14 H 0.081 0.919 15 C -0.070 4.070 16 N -0.954 5.954 17 Si 0.974 3.026 18 H -0.288 1.288 19 H -0.295 1.295 20 H -0.269 1.269 21 C 0.130 3.870 22 C -0.089 4.089 23 C 0.123 3.877 24 H 0.112 0.888 25 H 0.089 0.911 26 H 0.129 0.871 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.031 0.969 36 H 0.018 0.982 37 H 0.246 0.754 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.975 -16.818 -12.487 22.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.173 4.173 3 C -0.117 4.117 4 C -0.165 4.165 5 C 0.297 3.703 6 O -0.475 6.475 7 N -0.339 5.339 8 C -0.011 4.011 9 C -0.153 4.153 10 C -0.084 4.084 11 C 0.042 3.958 12 N -0.367 5.367 13 C -0.358 4.358 14 H 0.099 0.901 15 C -0.262 4.262 16 N -0.603 5.603 17 Si 0.803 3.197 18 H -0.215 1.215 19 H -0.222 1.222 20 H -0.194 1.194 21 C 0.006 3.994 22 C -0.127 4.127 23 C 0.000 4.000 24 H 0.130 0.870 25 H 0.107 0.893 26 H 0.147 0.853 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.132 0.868 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.035 0.965 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.931 -16.146 -12.746 22.047 hybrid contribution 0.704 1.446 0.985 1.886 sum -7.227 -14.700 -11.760 20.165 Atomic orbital electron populations 1.24037 0.96199 1.02343 1.00905 1.23004 0.96088 0.98112 1.00057 1.20457 0.97602 0.95748 0.97843 1.21698 0.99068 0.94140 1.01643 1.21468 0.78911 0.89899 0.80047 1.90660 1.67172 1.50283 1.39430 1.48247 1.39240 1.18293 1.28114 1.21902 1.03711 0.90633 0.84814 1.21728 0.99991 0.95455 0.98110 1.22108 0.95485 0.95900 0.94911 1.22183 0.85153 0.95799 0.92681 1.46340 1.08292 1.34114 1.47924 1.19402 0.91477 1.07359 1.17556 0.90132 1.25575 0.98585 1.01772 1.00317 1.70013 1.18319 1.37950 1.34062 0.85134 0.78699 0.78985 0.76878 1.21501 1.22202 1.19361 1.22773 0.94100 0.90758 0.91779 1.21331 1.00397 0.97424 0.93559 1.21393 0.96370 0.85576 0.96646 0.87006 0.89261 0.85307 0.92817 0.91495 0.86833 0.85726 0.86036 0.89756 0.89122 0.91427 0.95066 0.96469 0.94496 0.93014 0.93366 0.93017 0.92957 0.90779 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.53 14.32 67.78 0.97 -1.56 16 2 C -0.15 -1.98 9.52 25.65 0.24 -1.73 16 3 C -0.08 -1.35 4.95 29.85 0.15 -1.20 16 4 C -0.13 -1.89 4.02 29.85 0.12 -1.77 16 5 C 0.51 12.49 7.69 87.66 0.67 13.16 16 6 O -0.59 -20.01 15.37 -3.02 -0.05 -20.05 16 7 N -0.61 -14.48 2.95 -819.58 -2.42 -16.90 16 8 C 0.11 1.94 6.19 86.26 0.53 2.48 16 9 C -0.11 -2.70 5.24 30.44 0.16 -2.54 16 10 C -0.08 -2.84 0.77 -52.03 -0.04 -2.88 16 11 C 0.17 7.83 6.64 86.32 0.57 8.41 16 12 N -0.64 -32.42 3.53 -722.61 -2.55 -34.97 16 13 C -0.23 -12.94 10.70 84.03 0.90 -12.04 16 14 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 15 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 16 N -0.95 -58.48 11.39 21.65 0.25 -58.23 16 17 Si 0.97 46.49 29.55 68.60 2.03 48.51 16 18 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 19 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 C 0.13 4.89 7.73 86.32 0.67 5.56 16 22 C -0.09 -3.09 5.21 30.58 0.16 -2.93 16 23 C 0.12 3.59 6.30 86.40 0.54 4.13 16 24 H 0.11 1.07 8.06 -2.91 -0.02 1.05 16 25 H 0.09 1.25 7.84 -2.91 -0.02 1.23 16 26 H 0.13 1.14 8.06 -2.91 -0.02 1.11 16 27 H 0.05 1.13 7.75 -2.39 -0.02 1.11 16 28 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 29 H 0.11 1.33 7.71 -2.39 -0.02 1.31 16 30 H 0.12 1.14 7.91 -2.39 -0.02 1.12 16 31 H 0.12 1.22 5.89 -2.38 -0.01 1.21 16 32 H 0.08 1.33 8.07 -2.39 -0.02 1.31 16 33 H 0.09 1.95 8.12 -2.39 -0.02 1.93 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.03 1.69 7.12 -2.39 -0.02 1.68 16 36 H 0.02 0.83 8.09 -2.39 -0.02 0.81 16 37 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 38 H 0.05 1.77 8.07 -2.39 -0.02 1.75 16 39 H 0.05 1.73 7.41 -2.39 -0.02 1.72 16 40 H 0.05 2.14 8.01 -2.38 -0.02 2.13 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.07 2.05 7.49 -2.39 -0.02 2.03 16 43 H 0.07 2.39 6.98 -2.39 -0.02 2.37 16 Total: -1.00 -73.32 342.00 4.34 -68.98 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.96 Total: 9.14 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 6.12 Total: 3.51 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -4.72 Total: -110.10 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.05 Total: -20.05 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -73.32 4.34 -68.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698807510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.649 kcal (2) G-P(sol) polarization free energy of solvation -73.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds