Wall clock time and date at job start Tue Mar 31 2020 00:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47151 * 131.13184 * 3 2 1 5 5 C 1.52997 * 109.47544 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47544 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47186 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99936 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00347 * 180.02562 * 7 6 5 10 10 C 1.46495 * 120.00573 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.46990 * 325.00265 * 10 9 7 12 12 C 1.52997 * 109.47430 * 204.99724 * 10 9 7 13 13 N 1.46510 * 109.46971 * 55.00029 * 12 10 9 14 14 C 1.36928 * 119.99813 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00208 * 0.02562 * 14 13 12 16 16 C 1.38818 * 119.99781 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00201 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99759 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47138 * 90.00466 * 18 16 14 20 20 H 1.48503 * 109.46950 * 209.99822 * 18 16 14 21 21 H 1.48500 * 109.47463 * 330.00196 * 18 16 14 22 22 C 1.53003 * 109.47194 * 84.99642 * 10 9 7 23 23 C 1.53001 * 117.51964 * 231.28709 * 22 10 9 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 10 25 25 H 4.44649 * 5.63295 * 180.02562 * 4 1 2 26 26 H 1.08995 * 109.47159 * 11.13066 * 3 2 1 27 27 H 1.09003 * 109.46724 * 251.12749 * 3 2 1 28 28 H 1.09000 * 109.47004 * 59.99483 * 4 3 2 29 29 H 1.09000 * 109.47224 * 300.00139 * 4 3 2 30 30 H 1.09009 * 109.46903 * 59.99850 * 5 4 3 31 31 H 1.09000 * 109.47163 * 300.00408 * 5 4 3 32 32 H 1.08995 * 109.47186 * 60.00130 * 6 5 4 33 33 H 1.09005 * 109.46828 * 300.00180 * 6 5 4 34 34 H 0.97002 * 119.99812 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.47132 * 174.99771 * 12 10 9 36 36 H 1.08998 * 109.47469 * 295.00258 * 12 10 9 37 37 H 0.96992 * 119.99894 * 0.02562 * 13 12 10 38 38 H 0.96998 * 119.99897 * 180.02562 * 17 16 14 39 39 H 1.09002 * 115.54973 * 85.58492 * 22 10 9 40 40 H 1.09001 * 117.49733 * 214.97413 * 23 22 10 41 41 H 1.08995 * 117.49577 * 359.97438 * 23 22 10 42 42 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 43 43 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.9497 -1.0865 5 6 4.6856 0.9510 -1.0861 6 6 5.1952 1.9005 -2.1722 7 6 6.7021 1.9012 -2.1722 8 8 7.3088 1.2106 -1.3810 9 7 7.3757 2.6701 -3.0506 10 6 8.8406 2.6712 -3.0503 11 1 9.2038 2.5610 -2.0284 12 6 9.3498 3.9910 -3.6330 13 7 8.7646 5.1105 -2.8908 14 6 9.0777 6.3983 -3.2351 15 1 9.7556 6.5888 -4.0540 16 6 8.5228 7.4591 -2.5323 17 7 7.6962 7.2269 -1.5347 18 14 8.9492 9.2159 -3.0025 19 1 7.9815 9.7057 -4.0167 20 1 8.8831 10.0808 -1.7971 21 1 10.3220 9.2580 -3.5672 22 6 9.3518 1.5070 -3.9014 23 6 10.3881 0.5733 -3.2728 24 6 8.9501 0.0926 -3.4781 25 1 -1.0501 0.0000 0.0003 26 1 3.0098 -1.0075 -0.1984 27 1 3.0092 0.3332 0.9725 28 1 2.7917 1.9579 -0.8881 29 1 2.7924 0.6173 -2.0589 30 1 5.0498 -0.0572 -1.2843 31 1 5.0484 1.2837 -0.1136 32 1 4.8310 2.9085 -1.9736 33 1 4.8323 1.5682 -3.1448 34 1 6.8905 3.2227 -3.6831 35 1 10.4361 4.0292 -3.5513 36 1 9.0617 4.0603 -4.6819 37 1 8.1561 4.9394 -2.1552 38 1 7.3082 7.9682 -1.0438 39 1 9.4372 1.7075 -4.9694 40 1 11.1553 0.1596 -3.9273 41 1 10.7063 0.7885 -2.2528 42 1 8.3220 -0.0085 -2.5929 43 1 8.7713 -0.6373 -4.2676 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699575081.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:37 Heat of formation + Delta-G solvation = 29.270102 kcal Electronic energy + Delta-G solvation = -21152.159047 eV Core-core repulsion = 18006.217135 eV Total energy + Delta-G solvation = -3145.941911 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.78418 -37.35964 -36.08120 -34.98702 -33.35436 -33.17849 -31.16109 -29.93140 -27.97662 -25.13787 -23.92455 -22.14644 -21.60290 -21.40102 -20.23881 -19.90929 -18.20136 -17.29842 -16.55266 -16.12566 -15.92070 -15.13153 -14.97896 -14.46482 -14.33998 -14.02841 -13.79264 -13.17110 -13.06582 -12.85589 -12.77983 -12.22756 -11.79264 -11.71276 -11.62105 -11.28458 -11.15452 -11.00001 -10.90966 -10.81718 -10.68307 -10.33318 -10.23643 -10.19329 -10.09235 -9.93249 -9.69602 -9.39450 -8.92845 -8.56167 -6.97841 -5.79989 -3.09651 2.64766 2.68433 2.99069 3.40927 3.45926 3.47488 3.48615 4.13481 4.24007 4.54433 4.84844 4.87406 4.91476 4.95503 5.18944 5.25007 5.30379 5.30806 5.44913 5.48680 5.53679 5.65432 5.71942 5.75862 5.83314 5.86597 5.88998 5.91397 5.93745 6.10036 6.20789 6.24054 6.32622 6.38435 6.51900 6.54180 6.70031 6.99400 7.45789 7.66457 7.94228 8.37955 8.62343 9.49858 10.05618 10.41327 11.42357 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011853 B = 0.004042 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.668242 B = 6925.426375 C = 9028.474828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.181 4.181 3 C -0.016 4.016 4 C -0.115 4.115 5 C -0.102 4.102 6 C -0.142 4.142 7 C 0.516 3.484 8 O -0.550 6.550 9 N -0.709 5.709 10 C 0.168 3.832 11 H 0.086 0.914 12 C 0.148 3.852 13 N -0.731 5.731 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.012 4.012 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.162 4.162 23 C -0.172 4.172 24 C -0.185 4.185 25 H 0.215 0.785 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.404 0.596 35 H 0.034 0.966 36 H 0.024 0.976 37 H 0.386 0.614 38 H 0.255 0.745 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.532 -15.571 -2.277 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.181 4.181 3 C -0.052 4.052 4 C -0.153 4.153 5 C -0.140 4.140 6 C -0.182 4.182 7 C 0.303 3.697 8 O -0.429 6.429 9 N -0.358 5.358 10 C 0.063 3.937 11 H 0.104 0.896 12 C 0.020 3.980 13 N -0.376 5.376 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.579 5.579 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.182 4.182 23 C -0.210 4.210 24 C -0.222 4.222 25 H 0.232 0.768 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.238 0.762 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.220 0.780 38 H 0.065 0.935 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.136 0.864 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.002 -15.891 -1.793 17.457 hybrid contribution -0.394 1.339 -0.418 1.457 sum -7.396 -14.552 -2.210 16.473 Atomic orbital electron populations 1.24891 0.95983 1.01493 1.01431 1.23283 0.94710 1.00022 1.00046 1.18792 0.84383 1.01245 1.00799 1.21571 0.95667 0.99691 0.98340 1.21315 0.93563 0.99849 0.99249 1.21668 0.92482 1.02759 1.01337 1.20579 0.90014 0.79034 0.80045 1.90591 1.70400 1.42391 1.39512 1.45992 1.07175 1.45381 1.37275 1.20767 0.79492 0.93740 0.99666 0.89551 1.20916 0.96655 0.85597 0.94856 1.42343 1.55426 1.00828 1.39029 1.19215 1.22444 0.82988 1.12689 0.91146 1.24750 0.99870 0.97943 0.98270 1.69664 1.34585 1.30540 1.23143 0.86186 0.77861 0.84872 0.77220 1.21720 1.21770 1.20771 1.22651 1.04388 0.91536 0.99617 1.22879 0.92353 1.03800 1.01926 1.23256 0.98653 0.96059 1.04229 0.76804 0.89508 0.89338 0.91315 0.91615 0.91164 0.90828 0.88532 0.89271 0.76168 0.94805 0.95808 0.78003 0.93488 0.88017 0.89301 0.88788 0.86415 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.08 19.25 29.55 0.57 -1.51 16 2 C -0.18 -1.89 13.34 -37.12 -0.50 -2.38 16 3 C -0.02 -0.14 5.70 -29.52 -0.17 -0.31 16 4 C -0.12 -1.07 5.17 -26.73 -0.14 -1.21 16 5 C -0.10 -1.10 4.50 -26.73 -0.12 -1.22 16 6 C -0.14 -1.67 5.70 -27.89 -0.16 -1.82 16 7 C 0.52 7.92 7.16 -10.99 -0.08 7.84 16 8 O -0.55 -9.87 13.01 5.55 0.07 -9.79 16 9 N -0.71 -11.04 4.50 -53.81 -0.24 -11.29 16 10 C 0.17 2.83 2.43 -67.93 -0.17 2.66 16 11 H 0.09 1.67 7.34 -51.93 -0.38 1.29 16 12 C 0.15 2.88 5.80 -4.04 -0.02 2.85 16 13 N -0.73 -17.97 5.43 -59.91 -0.33 -18.29 16 14 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 15 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 17 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 18 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C -0.16 -2.31 5.36 -90.61 -0.49 -2.80 16 23 C -0.17 -2.29 10.18 -26.73 -0.27 -2.56 16 24 C -0.19 -2.54 9.73 -26.73 -0.26 -2.80 16 25 H 0.22 1.28 7.80 -54.09 -0.42 0.86 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.77 8.10 -51.92 -0.42 0.35 16 31 H 0.07 0.90 8.10 -51.93 -0.42 0.47 16 32 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.40 5.99 8.60 -40.82 -0.35 5.64 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.39 10.10 7.33 -40.82 -0.30 9.80 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.10 1.35 8.11 -51.93 -0.42 0.93 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 42 H 0.12 1.86 5.02 -51.93 -0.26 1.60 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 362.72 15.07 5.47 5.47 Total: -1.00 -31.52 362.72 -8.54 -40.06 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -7.17 Total: 14.23 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -2.04 Total: -10.48 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.16 Total: -56.58 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.07 Total: -9.79 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.52 -8.54 -40.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699575081.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.335 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds