Wall clock time and date at job start Tue Mar 31 2020 00:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47151 * 131.13184 * 3 2 1 5 5 C 1.52997 * 109.47544 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47544 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47186 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99936 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00347 * 180.02562 * 7 6 5 10 10 C 1.46495 * 120.00573 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.46990 * 325.00265 * 10 9 7 12 12 C 1.52997 * 109.47430 * 204.99724 * 10 9 7 13 13 N 1.46510 * 109.46971 * 55.00029 * 12 10 9 14 14 C 1.36928 * 119.99813 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00208 * 0.02562 * 14 13 12 16 16 C 1.38818 * 119.99781 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00201 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99759 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47138 * 90.00466 * 18 16 14 20 20 H 1.48503 * 109.46950 * 209.99822 * 18 16 14 21 21 H 1.48500 * 109.47463 * 330.00196 * 18 16 14 22 22 C 1.53003 * 109.47194 * 84.99642 * 10 9 7 23 23 C 1.53001 * 117.51964 * 231.28709 * 22 10 9 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 10 25 25 H 4.44649 * 5.63295 * 180.02562 * 4 1 2 26 26 H 1.08995 * 109.47159 * 11.13066 * 3 2 1 27 27 H 1.09003 * 109.46724 * 251.12749 * 3 2 1 28 28 H 1.09000 * 109.47004 * 59.99483 * 4 3 2 29 29 H 1.09000 * 109.47224 * 300.00139 * 4 3 2 30 30 H 1.09009 * 109.46903 * 59.99850 * 5 4 3 31 31 H 1.09000 * 109.47163 * 300.00408 * 5 4 3 32 32 H 1.08995 * 109.47186 * 60.00130 * 6 5 4 33 33 H 1.09005 * 109.46828 * 300.00180 * 6 5 4 34 34 H 0.97002 * 119.99812 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.47132 * 174.99771 * 12 10 9 36 36 H 1.08998 * 109.47469 * 295.00258 * 12 10 9 37 37 H 0.96992 * 119.99894 * 0.02562 * 13 12 10 38 38 H 0.96998 * 119.99897 * 180.02562 * 17 16 14 39 39 H 1.09002 * 115.54973 * 85.58492 * 22 10 9 40 40 H 1.09001 * 117.49733 * 214.97413 * 23 22 10 41 41 H 1.08995 * 117.49577 * 359.97438 * 23 22 10 42 42 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 43 43 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.9497 -1.0865 5 6 4.6856 0.9510 -1.0861 6 6 5.1952 1.9005 -2.1722 7 6 6.7021 1.9012 -2.1722 8 8 7.3088 1.2106 -1.3810 9 7 7.3757 2.6701 -3.0506 10 6 8.8406 2.6712 -3.0503 11 1 9.2038 2.5610 -2.0284 12 6 9.3498 3.9910 -3.6330 13 7 8.7646 5.1105 -2.8908 14 6 9.0777 6.3983 -3.2351 15 1 9.7556 6.5888 -4.0540 16 6 8.5228 7.4591 -2.5323 17 7 7.6962 7.2269 -1.5347 18 14 8.9492 9.2159 -3.0025 19 1 7.9815 9.7057 -4.0167 20 1 8.8831 10.0808 -1.7971 21 1 10.3220 9.2580 -3.5672 22 6 9.3518 1.5070 -3.9014 23 6 10.3881 0.5733 -3.2728 24 6 8.9501 0.0926 -3.4781 25 1 -1.0501 0.0000 0.0003 26 1 3.0098 -1.0075 -0.1984 27 1 3.0092 0.3332 0.9725 28 1 2.7917 1.9579 -0.8881 29 1 2.7924 0.6173 -2.0589 30 1 5.0498 -0.0572 -1.2843 31 1 5.0484 1.2837 -0.1136 32 1 4.8310 2.9085 -1.9736 33 1 4.8323 1.5682 -3.1448 34 1 6.8905 3.2227 -3.6831 35 1 10.4361 4.0292 -3.5513 36 1 9.0617 4.0603 -4.6819 37 1 8.1561 4.9394 -2.1552 38 1 7.3082 7.9682 -1.0438 39 1 9.4372 1.7075 -4.9694 40 1 11.1553 0.1596 -3.9273 41 1 10.7063 0.7885 -2.2528 42 1 8.3220 -0.0085 -2.5929 43 1 8.7713 -0.6373 -4.2676 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699575081.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:36 Heat of formation + Delta-G solvation = 10.822620 kcal Electronic energy + Delta-G solvation = -21152.958990 eV Core-core repulsion = 18006.217135 eV Total energy + Delta-G solvation = -3146.741854 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.04082 -38.56156 -36.92737 -36.60681 -34.91488 -34.04512 -32.96798 -30.93116 -29.48801 -26.30639 -25.58068 -23.31443 -23.04867 -22.39590 -21.39649 -21.16014 -19.25433 -18.86805 -17.85697 -17.28011 -17.00944 -16.64657 -16.29649 -15.83539 -15.28314 -15.15805 -15.11968 -14.88477 -14.51712 -14.04320 -13.77002 -13.66665 -13.17423 -12.84008 -12.73885 -12.62434 -12.60494 -12.39140 -12.21203 -12.13009 -12.07725 -11.84753 -11.56592 -11.23399 -11.10917 -11.06694 -10.97733 -10.95588 -10.59866 -9.86014 -9.01432 -7.94324 -5.23889 1.48780 1.50000 1.58407 1.77180 1.89864 1.94661 2.27777 2.56235 3.05503 3.39863 3.52391 3.60341 3.88018 3.98430 4.04070 4.07654 4.14381 4.19448 4.34993 4.45309 4.47492 4.49775 4.65748 4.67274 4.80569 4.83006 4.86924 4.92511 4.95083 5.06370 5.12443 5.13903 5.23209 5.31049 5.36660 5.41025 5.47535 5.50501 5.66680 6.26355 6.70217 6.73877 7.33873 7.39528 8.06774 8.31363 9.28618 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011853 B = 0.004042 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.668242 B = 6925.426375 C = 9028.474828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.217 4.217 3 C -0.016 4.016 4 C -0.105 4.105 5 C -0.095 4.095 6 C -0.136 4.136 7 C 0.510 3.490 8 O -0.579 6.579 9 N -0.708 5.708 10 C 0.179 3.821 11 H 0.055 0.945 12 C 0.150 3.850 13 N -0.742 5.742 14 C -0.245 4.245 15 H 0.078 0.922 16 C -0.073 4.073 17 N -0.967 5.967 18 Si 0.973 3.027 19 H -0.285 1.285 20 H -0.299 1.299 21 H -0.271 1.271 22 C -0.164 4.164 23 C -0.168 4.168 24 C -0.179 4.179 25 H 0.243 0.757 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.408 0.592 35 H 0.033 0.967 36 H 0.040 0.960 37 H 0.375 0.625 38 H 0.250 0.750 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.859 -16.171 -4.034 18.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.217 4.217 3 C -0.053 4.053 4 C -0.143 4.143 5 C -0.133 4.133 6 C -0.176 4.176 7 C 0.299 3.701 8 O -0.460 6.460 9 N -0.358 5.358 10 C 0.073 3.927 11 H 0.073 0.927 12 C 0.023 3.977 13 N -0.385 5.385 14 C -0.376 4.376 15 H 0.096 0.904 16 C -0.265 4.265 17 N -0.618 5.618 18 Si 0.802 3.198 19 H -0.212 1.212 20 H -0.226 1.226 21 H -0.196 1.196 22 C -0.184 4.184 23 C -0.205 4.205 24 C -0.216 4.216 25 H 0.259 0.741 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.136 0.864 34 H 0.244 0.756 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.207 0.793 38 H 0.059 0.941 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.311 -16.510 -3.589 18.410 hybrid contribution -0.274 1.464 0.135 1.495 sum -7.585 -15.047 -3.454 17.201 Atomic orbital electron populations 1.25700 0.96943 1.00369 1.00236 1.23734 0.95560 1.01147 1.01212 1.18806 0.84125 1.01691 1.00672 1.21461 0.94191 0.99571 0.99040 1.21235 0.94647 0.99459 0.97942 1.21702 0.89599 1.03101 1.03158 1.21226 0.91468 0.78241 0.79210 1.90582 1.71329 1.43586 1.40517 1.45995 1.06711 1.45540 1.37545 1.20489 0.80365 0.93567 0.98249 0.92711 1.21034 0.96304 0.85293 0.95067 1.42508 1.55436 1.01438 1.39164 1.19622 1.21566 0.84222 1.12216 0.90402 1.25548 1.00460 1.01847 0.98693 1.69823 1.36171 1.31221 1.24558 0.85148 0.78067 0.80032 0.76523 1.21156 1.22577 1.19580 1.22556 1.05223 0.90707 0.99914 1.22961 0.92825 1.03086 1.01653 1.23200 0.98497 0.95957 1.03962 0.74097 0.88553 0.89403 0.91852 0.90595 0.91161 0.92738 0.88546 0.86437 0.75639 0.94906 0.94195 0.79330 0.94095 0.86250 0.86749 0.90226 0.88601 0.87782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.74 19.25 74.32 1.43 -2.31 16 2 C -0.22 -4.34 13.34 31.12 0.42 -3.92 16 3 C -0.02 -0.29 5.70 28.79 0.16 -0.13 16 4 C -0.11 -1.87 5.17 30.59 0.16 -1.72 16 5 C -0.09 -2.03 4.50 30.59 0.14 -1.89 16 6 C -0.14 -3.09 5.70 29.85 0.17 -2.92 16 7 C 0.51 15.71 7.16 87.66 0.63 16.34 16 8 O -0.58 -21.30 13.01 -3.05 -0.04 -21.34 16 9 N -0.71 -21.96 4.50 -442.54 -1.99 -23.95 16 10 C 0.18 5.99 2.43 44.99 0.11 6.10 16 11 H 0.05 2.19 7.34 -2.38 -0.02 2.17 16 12 C 0.15 5.74 5.80 86.38 0.50 6.24 16 13 N -0.74 -36.61 5.43 -343.44 -1.87 -38.47 16 14 C -0.24 -13.30 9.99 84.04 0.84 -12.46 16 15 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 16 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 17 N -0.97 -58.43 13.06 21.65 0.28 -58.15 16 18 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 C -0.16 -4.43 5.36 -10.79 -0.06 -4.49 16 23 C -0.17 -4.21 10.18 30.59 0.31 -3.90 16 24 C -0.18 -4.64 9.73 30.60 0.30 -4.34 16 25 H 0.24 2.34 7.80 -4.41 -0.03 2.30 16 26 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.50 8.10 -2.38 -0.02 1.49 16 31 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 32 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.41 11.86 8.60 -92.71 -0.80 11.07 16 35 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.37 20.01 7.33 -92.71 -0.68 19.33 16 38 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 39 H 0.12 2.84 8.11 -2.39 -0.02 2.82 16 40 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.08 2.23 8.05 -2.39 -0.02 2.21 16 42 H 0.10 2.99 5.02 -2.39 -0.01 2.98 16 43 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -67.67 362.72 3.50 -64.17 By element: Atomic # 1 Polarization: 43.82 SS G_CDS: -0.49 Total: 43.34 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 5.57 Total: -13.05 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -3.57 Total: -120.57 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.04 Total: -21.34 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -67.67 3.50 -64.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699575081.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.993 kcal (2) G-P(sol) polarization free energy of solvation -67.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds