Wall clock time and date at job start Tue Mar 31 2020 00:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47353 * 317.32805 * 3 2 1 5 5 C 1.53006 * 109.47388 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47053 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.46780 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99995 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99703 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99726 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47007 * 34.99037 * 10 9 7 12 12 C 1.52996 * 109.47012 * 154.99585 * 10 9 7 13 13 N 1.46498 * 109.47059 * 304.99483 * 12 10 9 14 14 C 1.36943 * 119.99752 * 179.72430 * 13 12 10 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31624 * 119.99698 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00072 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47213 * 60.00246 * 18 16 14 20 20 H 1.48502 * 109.47317 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47081 * 299.99875 * 18 16 14 22 22 C 1.53003 * 109.46609 * 274.99704 * 10 9 7 23 23 C 1.52996 * 117.49852 * 128.74926 * 22 10 9 24 24 C 1.52995 * 117.50233 * 60.08634 * 22 10 9 25 25 H 4.44648 * 5.63262 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.47125 * 197.32796 * 3 2 1 27 27 H 1.08996 * 109.47312 * 77.32984 * 3 2 1 28 28 H 1.09000 * 109.47457 * 60.00513 * 4 3 2 29 29 H 1.09004 * 109.47647 * 300.00159 * 4 3 2 30 30 H 1.09000 * 109.46678 * 59.99699 * 5 4 3 31 31 H 1.08996 * 109.47019 * 300.00021 * 5 4 3 32 32 H 1.09000 * 109.47753 * 60.00200 * 6 5 4 33 33 H 1.09006 * 109.47172 * 299.99712 * 6 5 4 34 34 H 0.97000 * 119.99883 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.47066 * 184.99751 * 12 10 9 36 36 H 1.08994 * 109.46974 * 64.99899 * 12 10 9 37 37 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 38 38 H 0.96999 * 119.99739 * 180.02562 * 17 16 14 39 39 H 1.09006 * 115.54473 * 274.41180 * 22 10 9 40 40 H 1.08997 * 117.49676 * 359.97438 * 23 22 10 41 41 H 1.08999 * 117.49788 * 145.01561 * 23 22 10 42 42 H 1.09001 * 117.49820 * 214.97543 * 24 22 10 43 43 H 1.09004 * 117.49643 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0596 0.9777 5 6 4.6866 -1.0585 0.9781 6 6 5.1970 -2.1193 1.9554 7 6 6.7040 -2.1177 1.9563 8 8 7.3100 -1.3446 1.2450 9 7 7.3783 -2.9762 2.7468 10 6 8.8434 -2.9750 2.7473 11 1 9.2059 -1.9562 2.6110 12 6 9.3534 -3.5239 4.0813 13 7 8.7683 -2.7539 5.1817 14 6 9.0773 -3.0692 6.4781 15 1 9.7556 -3.8827 6.6889 16 6 8.5185 -2.3434 7.5210 17 7 7.6913 -1.3523 7.2639 18 14 8.9404 -2.7730 9.2892 19 1 10.4039 -2.6314 9.4974 20 1 8.2184 -1.8560 10.2073 21 1 8.5339 -4.1737 9.5688 22 6 9.3543 -3.8552 1.6048 23 6 10.3904 -3.2498 0.6557 24 6 8.9518 -3.4681 0.1804 25 1 -1.0498 -0.0001 0.0003 26 1 3.0089 0.9819 0.3061 27 1 3.0094 -0.2246 -1.0026 28 1 2.7937 -2.0409 0.6716 29 1 2.7931 -0.8345 1.9804 30 1 5.0490 -0.0772 1.2844 31 1 5.0503 -1.2835 -0.0244 32 1 4.8345 -3.1005 1.6487 33 1 4.8332 -1.8947 2.9581 34 1 6.8936 -3.5947 3.3154 35 1 10.4396 -3.4407 4.1169 36 1 9.0658 -4.5708 4.1772 37 1 8.1588 -2.0235 4.9924 38 1 7.3011 -0.8448 7.9927 39 1 9.4404 -4.9178 1.8324 40 1 10.7077 -2.2244 0.8450 41 1 11.1579 -3.9142 0.2585 42 1 8.7735 -4.2759 -0.5293 43 1 8.3226 -2.5866 0.0572 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699575082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:40 Heat of formation + Delta-G solvation = 29.389824 kcal Electronic energy + Delta-G solvation = -21152.732580 eV Core-core repulsion = 18006.795861 eV Total energy + Delta-G solvation = -3145.936720 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.78331 -37.35739 -36.08088 -34.98350 -33.35214 -33.17851 -31.15981 -29.93104 -27.97386 -25.13669 -23.92171 -22.14819 -21.60169 -21.39908 -20.23729 -19.90832 -18.20238 -17.29636 -16.55180 -16.12458 -15.92015 -15.12986 -14.97733 -14.46436 -14.34004 -14.02953 -13.79151 -13.16341 -13.06878 -12.85532 -12.78077 -12.22583 -11.79162 -11.71254 -11.61840 -11.28434 -11.15453 -10.99580 -10.90625 -10.80545 -10.68304 -10.33358 -10.23663 -10.22011 -10.09237 -9.93250 -9.69260 -9.39409 -8.92162 -8.56069 -6.97698 -5.79691 -3.09459 2.64785 2.68441 2.99168 3.41682 3.45855 3.47176 3.48107 4.13486 4.24034 4.54621 4.84915 4.87439 4.91575 4.95508 5.19098 5.25025 5.30375 5.30745 5.44971 5.48730 5.53789 5.65478 5.72003 5.75910 5.83392 5.86684 5.89063 5.91440 5.93851 6.10188 6.20830 6.24237 6.32656 6.38493 6.52001 6.54260 6.70126 6.99485 7.45783 7.66107 7.94313 8.38316 8.62406 9.50043 10.05822 10.41495 11.42570 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.004044 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.947513 B = 6921.680277 C = 9026.373115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.181 4.181 3 C -0.016 4.016 4 C -0.115 4.115 5 C -0.102 4.102 6 C -0.142 4.142 7 C 0.516 3.484 8 O -0.550 6.550 9 N -0.709 5.709 10 C 0.168 3.832 11 H 0.086 0.914 12 C 0.148 3.852 13 N -0.731 5.731 14 C -0.243 4.243 15 H 0.070 0.930 16 C -0.012 4.012 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.162 4.162 23 C -0.172 4.172 24 C -0.185 4.185 25 H 0.215 0.785 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.404 0.596 35 H 0.034 0.966 36 H 0.024 0.976 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.550 -2.648 -15.484 17.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.181 4.181 3 C -0.052 4.052 4 C -0.153 4.153 5 C -0.140 4.140 6 C -0.182 4.182 7 C 0.303 3.697 8 O -0.429 6.429 9 N -0.358 5.358 10 C 0.063 3.937 11 H 0.105 0.895 12 C 0.020 3.980 13 N -0.376 5.376 14 C -0.374 4.374 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.182 4.182 23 C -0.210 4.210 24 C -0.222 4.222 25 H 0.232 0.768 26 H 0.107 0.893 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.238 0.762 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.033 -2.169 -15.814 17.443 hybrid contribution -0.384 -0.394 1.348 1.456 sum -7.417 -2.563 -14.465 16.457 Atomic orbital electron populations 1.24883 0.95983 1.01448 1.01479 1.23280 0.94711 1.00038 1.00025 1.18791 0.84381 1.00937 1.01109 1.21572 0.95664 0.98546 0.99489 1.21315 0.93560 0.99467 0.99632 1.21671 0.92483 1.01463 1.02633 1.20580 0.90009 0.79829 0.79250 1.90589 1.70440 1.39998 1.41862 1.45998 1.07173 1.38903 1.43759 1.20770 0.79487 0.99494 0.93916 0.89549 1.20913 0.96658 0.94757 0.85687 1.42336 1.55485 1.38785 1.01012 1.19172 1.22431 1.12872 0.82944 0.91202 1.24748 0.99813 0.98278 0.97960 1.69657 1.34412 1.22778 1.31103 0.86259 0.77728 0.77372 0.84738 1.21264 1.21688 1.21277 1.22649 1.04371 0.99726 0.91430 1.22890 0.92344 1.01940 1.03791 1.23265 0.98643 1.04207 0.96089 0.76811 0.89338 0.89509 0.91615 0.91314 0.90823 0.91171 0.89263 0.88540 0.76167 0.94809 0.95824 0.77999 0.93437 0.88021 0.88785 0.89298 0.90020 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.08 19.25 29.55 0.57 -1.51 16 2 C -0.18 -1.89 13.34 -37.12 -0.50 -2.38 16 3 C -0.02 -0.14 5.70 -29.52 -0.17 -0.31 16 4 C -0.12 -1.07 5.17 -26.73 -0.14 -1.21 16 5 C -0.10 -1.10 4.50 -26.73 -0.12 -1.22 16 6 C -0.14 -1.67 5.70 -27.88 -0.16 -1.83 16 7 C 0.52 7.92 7.16 -10.98 -0.08 7.84 16 8 O -0.55 -9.87 13.01 5.56 0.07 -9.79 16 9 N -0.71 -11.06 4.50 -53.80 -0.24 -11.30 16 10 C 0.17 2.83 2.43 -67.93 -0.17 2.66 16 11 H 0.09 1.67 7.34 -51.93 -0.38 1.29 16 12 C 0.15 2.88 5.80 -4.04 -0.02 2.86 16 13 N -0.73 -17.98 5.43 -59.91 -0.33 -18.30 16 14 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 15 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 16 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 18 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 C -0.16 -2.31 5.36 -90.62 -0.49 -2.79 16 23 C -0.17 -2.29 10.18 -26.70 -0.27 -2.56 16 24 C -0.19 -2.54 9.74 -26.70 -0.26 -2.80 16 25 H 0.22 1.28 7.80 -54.10 -0.42 0.86 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 31 H 0.07 0.77 8.10 -51.93 -0.42 0.34 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.40 6.00 8.60 -40.82 -0.35 5.64 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.39 10.10 7.33 -40.82 -0.30 9.80 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.10 1.36 8.11 -51.93 -0.42 0.93 16 40 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.12 1.86 5.02 -51.93 -0.26 1.60 16 LS Contribution 362.71 15.07 5.47 5.47 Total: -1.00 -31.49 362.71 -8.54 -40.03 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -7.17 Total: 14.29 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -2.04 Total: -10.49 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.16 Total: -56.60 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.07 Total: -9.79 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.49 -8.54 -40.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699575082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.422 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds