Wall clock time and date at job start Tue Mar 31 2020 00:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47353 * 317.32805 * 3 2 1 5 5 C 1.53006 * 109.47388 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47053 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.46780 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99995 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99703 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99726 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47007 * 34.99037 * 10 9 7 12 12 C 1.52996 * 109.47012 * 154.99585 * 10 9 7 13 13 N 1.46498 * 109.47059 * 304.99483 * 12 10 9 14 14 C 1.36943 * 119.99752 * 179.72430 * 13 12 10 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31624 * 119.99698 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00072 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47213 * 60.00246 * 18 16 14 20 20 H 1.48502 * 109.47317 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47081 * 299.99875 * 18 16 14 22 22 C 1.53003 * 109.46609 * 274.99704 * 10 9 7 23 23 C 1.52996 * 117.49852 * 128.74926 * 22 10 9 24 24 C 1.52995 * 117.50233 * 60.08634 * 22 10 9 25 25 H 4.44648 * 5.63262 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.47125 * 197.32796 * 3 2 1 27 27 H 1.08996 * 109.47312 * 77.32984 * 3 2 1 28 28 H 1.09000 * 109.47457 * 60.00513 * 4 3 2 29 29 H 1.09004 * 109.47647 * 300.00159 * 4 3 2 30 30 H 1.09000 * 109.46678 * 59.99699 * 5 4 3 31 31 H 1.08996 * 109.47019 * 300.00021 * 5 4 3 32 32 H 1.09000 * 109.47753 * 60.00200 * 6 5 4 33 33 H 1.09006 * 109.47172 * 299.99712 * 6 5 4 34 34 H 0.97000 * 119.99883 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.47066 * 184.99751 * 12 10 9 36 36 H 1.08994 * 109.46974 * 64.99899 * 12 10 9 37 37 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 38 38 H 0.96999 * 119.99739 * 180.02562 * 17 16 14 39 39 H 1.09006 * 115.54473 * 274.41180 * 22 10 9 40 40 H 1.08997 * 117.49676 * 359.97438 * 23 22 10 41 41 H 1.08999 * 117.49788 * 145.01561 * 23 22 10 42 42 H 1.09001 * 117.49820 * 214.97543 * 24 22 10 43 43 H 1.09004 * 117.49643 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0596 0.9777 5 6 4.6866 -1.0585 0.9781 6 6 5.1970 -2.1193 1.9554 7 6 6.7040 -2.1177 1.9563 8 8 7.3100 -1.3446 1.2450 9 7 7.3783 -2.9762 2.7468 10 6 8.8434 -2.9750 2.7473 11 1 9.2059 -1.9562 2.6110 12 6 9.3534 -3.5239 4.0813 13 7 8.7683 -2.7539 5.1817 14 6 9.0773 -3.0692 6.4781 15 1 9.7556 -3.8827 6.6889 16 6 8.5185 -2.3434 7.5210 17 7 7.6913 -1.3523 7.2639 18 14 8.9404 -2.7730 9.2892 19 1 10.4039 -2.6314 9.4974 20 1 8.2184 -1.8560 10.2073 21 1 8.5339 -4.1737 9.5688 22 6 9.3543 -3.8552 1.6048 23 6 10.3904 -3.2498 0.6557 24 6 8.9518 -3.4681 0.1804 25 1 -1.0498 -0.0001 0.0003 26 1 3.0089 0.9819 0.3061 27 1 3.0094 -0.2246 -1.0026 28 1 2.7937 -2.0409 0.6716 29 1 2.7931 -0.8345 1.9804 30 1 5.0490 -0.0772 1.2844 31 1 5.0503 -1.2835 -0.0244 32 1 4.8345 -3.1005 1.6487 33 1 4.8332 -1.8947 2.9581 34 1 6.8936 -3.5947 3.3154 35 1 10.4396 -3.4407 4.1169 36 1 9.0658 -4.5708 4.1772 37 1 8.1588 -2.0235 4.9924 38 1 7.3011 -0.8448 7.9927 39 1 9.4404 -4.9178 1.8324 40 1 10.7077 -2.2244 0.8450 41 1 11.1579 -3.9142 0.2585 42 1 8.7735 -4.2759 -0.5293 43 1 8.3226 -2.5866 0.0572 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699575082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:39 Heat of formation + Delta-G solvation = 10.971467 kcal Electronic energy + Delta-G solvation = -21153.531260 eV Core-core repulsion = 18006.795861 eV Total energy + Delta-G solvation = -3146.735400 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04060 -38.56013 -36.92730 -36.60324 -34.91254 -34.04576 -32.96696 -30.93072 -29.48602 -26.30461 -25.57853 -23.31450 -23.04929 -22.39529 -21.39564 -21.15995 -19.25168 -18.86900 -17.85687 -17.27907 -17.00932 -16.64561 -16.29459 -15.83608 -15.28374 -15.15368 -15.11996 -14.88221 -14.51882 -14.04294 -13.77035 -13.66587 -13.17032 -12.82302 -12.71418 -12.63520 -12.60553 -12.39998 -12.21520 -12.13797 -12.09841 -11.84494 -11.56610 -11.23450 -11.10812 -11.06493 -10.96767 -10.95607 -10.59848 -9.85986 -9.01273 -7.94003 -5.23704 1.48827 1.51331 1.57441 1.77233 1.89875 1.94666 2.27771 2.56517 3.05414 3.39960 3.52416 3.60386 3.87980 3.98471 4.04134 4.07673 4.14398 4.19352 4.35010 4.45305 4.47517 4.49815 4.65800 4.67287 4.80588 4.83023 4.86922 4.92514 4.95079 5.06391 5.12460 5.13891 5.23287 5.31041 5.36668 5.41022 5.47550 5.50320 5.66659 6.26521 6.70208 6.73867 7.34006 7.39509 8.06968 8.31536 9.28696 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.004044 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.947513 B = 6921.680277 C = 9026.373115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.216 4.216 3 C -0.016 4.016 4 C -0.105 4.105 5 C -0.095 4.095 6 C -0.136 4.136 7 C 0.510 3.490 8 O -0.579 6.579 9 N -0.708 5.708 10 C 0.179 3.821 11 H 0.055 0.945 12 C 0.150 3.850 13 N -0.742 5.742 14 C -0.246 4.246 15 H 0.078 0.922 16 C -0.073 4.073 17 N -0.967 5.967 18 Si 0.974 3.026 19 H -0.281 1.281 20 H -0.298 1.298 21 H -0.275 1.275 22 C -0.164 4.164 23 C -0.168 4.168 24 C -0.179 4.179 25 H 0.243 0.757 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.408 0.592 35 H 0.033 0.967 36 H 0.040 0.960 37 H 0.375 0.625 38 H 0.250 0.750 39 H 0.119 0.881 40 H 0.079 0.921 41 H 0.114 0.886 42 H 0.104 0.896 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.890 -4.417 -16.030 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.216 4.216 3 C -0.053 4.053 4 C -0.143 4.143 5 C -0.133 4.133 6 C -0.176 4.176 7 C 0.299 3.701 8 O -0.460 6.460 9 N -0.358 5.358 10 C 0.073 3.927 11 H 0.073 0.927 12 C 0.023 3.977 13 N -0.385 5.385 14 C -0.378 4.378 15 H 0.096 0.904 16 C -0.265 4.265 17 N -0.617 5.617 18 Si 0.803 3.197 19 H -0.207 1.207 20 H -0.224 1.224 21 H -0.201 1.201 22 C -0.184 4.184 23 C -0.205 4.205 24 C -0.216 4.216 25 H 0.259 0.741 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.114 0.886 34 H 0.244 0.756 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.207 0.793 38 H 0.059 0.941 39 H 0.137 0.863 40 H 0.098 0.902 41 H 0.133 0.867 42 H 0.122 0.878 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.354 -3.979 -16.378 18.389 hybrid contribution -0.258 0.162 1.456 1.487 sum -7.612 -3.817 -14.922 17.181 Atomic orbital electron populations 1.25692 0.96941 1.00257 1.00354 1.23732 0.95560 1.01202 1.01151 1.18805 0.84122 1.00827 1.01540 1.21463 0.94188 0.99243 0.99372 1.21235 0.94644 0.98154 0.99249 1.21705 0.89596 1.03300 1.02959 1.21228 0.91464 0.78988 0.78464 1.90580 1.71368 1.41007 1.43048 1.46000 1.06709 1.39163 1.43930 1.20493 0.80359 0.98180 0.93640 0.92703 1.21030 0.96309 0.94865 0.85484 1.42500 1.55491 1.38996 1.01559 1.19590 1.21579 1.12417 0.84193 0.90420 1.25549 1.00382 0.98649 1.01928 1.69820 1.35990 1.24144 1.31795 0.85217 0.77397 0.77277 0.79858 1.20721 1.22393 1.20101 1.22554 1.05209 0.99952 0.90671 1.22973 0.92816 1.01694 1.03045 1.23209 0.98488 1.03995 0.95932 0.74108 0.89400 0.88553 0.90595 0.91852 0.92729 0.91167 0.86430 0.88558 0.75644 0.94905 0.94231 0.79327 0.94088 0.86261 0.90221 0.86745 0.87786 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.74 19.25 74.32 1.43 -2.31 16 2 C -0.22 -4.34 13.34 31.13 0.42 -3.92 16 3 C -0.02 -0.29 5.70 28.79 0.16 -0.13 16 4 C -0.11 -1.87 5.17 30.59 0.16 -1.72 16 5 C -0.09 -2.03 4.50 30.59 0.14 -1.89 16 6 C -0.14 -3.09 5.70 29.85 0.17 -2.92 16 7 C 0.51 15.72 7.16 87.66 0.63 16.35 16 8 O -0.58 -21.30 13.01 -3.02 -0.04 -21.34 16 9 N -0.71 -21.99 4.50 -442.51 -1.99 -23.98 16 10 C 0.18 6.00 2.43 44.99 0.11 6.10 16 11 H 0.05 2.19 7.34 -2.39 -0.02 2.18 16 12 C 0.15 5.75 5.80 86.38 0.50 6.25 16 13 N -0.74 -36.64 5.43 -343.46 -1.87 -38.51 16 14 C -0.25 -13.39 9.99 84.03 0.84 -12.55 16 15 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 16 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 17 N -0.97 -58.40 13.06 21.65 0.28 -58.12 16 18 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 C -0.16 -4.43 5.36 -10.80 -0.06 -4.49 16 23 C -0.17 -4.22 10.18 30.62 0.31 -3.90 16 24 C -0.18 -4.64 9.74 30.62 0.30 -4.34 16 25 H 0.24 2.34 7.80 -4.43 -0.03 2.30 16 26 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 31 H 0.07 1.50 8.10 -2.39 -0.02 1.48 16 32 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.41 11.88 8.60 -92.71 -0.80 11.09 16 35 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.37 20.02 7.33 -92.71 -0.68 19.34 16 38 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 39 H 0.12 2.84 8.11 -2.38 -0.02 2.82 16 40 H 0.08 2.23 8.05 -2.39 -0.02 2.21 16 41 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.10 3.00 5.02 -2.38 -0.01 2.98 16 Total: -1.00 -67.61 362.71 3.50 -64.11 By element: Atomic # 1 Polarization: 44.00 SS G_CDS: -0.49 Total: 43.52 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 5.57 Total: -13.10 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -3.57 Total: -120.60 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.04 Total: -21.34 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -67.61 3.50 -64.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699575082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.077 kcal (2) G-P(sol) polarization free energy of solvation -67.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds