Wall clock time and date at job start Tue Mar 31 2020 00:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.47103 * 120.00042 * 2 1 4 4 O 1.21610 * 119.99564 * 179.97438 * 3 2 1 5 5 N 1.34769 * 119.99930 * 0.02562 * 3 2 1 6 6 C 1.46503 * 119.99724 * 180.02562 * 5 3 2 7 7 C 1.53002 * 110.64339 * 59.29828 * 6 5 3 8 8 C 1.55158 * 110.72127 * 182.43665 * 6 5 3 9 9 C 1.54913 * 101.58119 * 82.85847 * 8 6 5 10 10 N 1.47425 * 104.83038 * 37.01324 * 9 8 6 11 11 C 1.36935 * 125.64852 * 155.91043 * 10 9 8 12 12 H 1.08002 * 119.99737 * 179.97438 * 11 10 9 13 13 C 1.38811 * 120.00028 * 359.97438 * 11 10 9 14 14 N 1.31614 * 120.00066 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99922 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47398 * 59.99769 * 15 13 11 17 17 H 1.48499 * 109.47055 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47102 * 299.99410 * 15 13 11 19 19 C 1.47486 * 108.75881 * 335.88999 * 10 9 8 20 20 C 1.32996 * 119.99837 * 179.97438 * 2 1 3 21 21 C 1.51578 * 135.77890 * 0.02562 * 20 2 1 22 22 C 1.53843 * 86.75571 * 205.15241 * 21 20 2 23 23 C 1.51866 * 135.78836 * 180.02562 * 20 2 1 24 24 H 1.08999 * 109.47485 * 270.00110 * 1 2 3 25 25 H 1.09003 * 109.46641 * 29.99976 * 1 2 3 26 26 H 1.08998 * 109.47113 * 149.99904 * 1 2 3 27 27 H 0.97000 * 120.00485 * 359.97438 * 5 3 2 28 28 H 1.08997 * 109.47095 * 60.69821 * 7 6 5 29 29 H 1.08998 * 109.47155 * 180.70141 * 7 6 5 30 30 H 1.09004 * 109.46825 * 300.70097 * 7 6 5 31 31 H 1.08999 * 111.00845 * 200.93602 * 8 6 5 32 32 H 1.09002 * 111.00457 * 324.75238 * 8 6 5 33 33 H 1.09004 * 110.36337 * 155.84833 * 9 8 6 34 34 H 1.08999 * 110.36812 * 278.17172 * 9 8 6 35 35 H 0.97001 * 120.00553 * 180.02562 * 14 13 11 36 36 H 1.09004 * 110.03516 * 241.66266 * 19 10 9 37 37 H 1.09001 * 109.96609 * 120.34809 * 19 10 9 38 38 H 1.09000 * 113.66387 * 90.68968 * 21 20 2 39 39 H 1.08997 * 113.67138 * 319.61604 * 21 20 2 40 40 H 1.09002 * 113.65913 * 89.69023 * 22 21 20 41 41 H 1.08998 * 113.65673 * 220.64232 * 22 21 20 42 42 H 1.09002 * 113.75816 * 40.40914 * 23 20 2 43 43 H 1.09001 * 113.66516 * 269.26079 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4586 1.2738 0.0005 5 7 1.5687 2.4411 0.0005 6 6 2.3013 3.7098 0.0000 7 6 3.2031 3.8114 -1.2318 8 6 1.3202 4.9102 0.0624 9 6 1.0342 4.9993 1.5823 10 7 2.3187 4.6725 2.2278 11 6 2.6997 5.0553 3.4861 12 1 3.6660 4.7632 3.8700 13 6 1.8439 5.8187 4.2683 14 7 0.6666 6.1751 3.8003 15 14 2.3640 6.3415 5.9846 16 1 3.5994 7.1612 5.8994 17 1 1.2804 7.1435 6.6074 18 1 2.6258 5.1359 6.8112 19 6 3.1262 3.8645 1.2950 20 6 2.1720 -1.1518 0.0005 21 6 1.7996 -2.6211 0.0007 22 6 3.1684 -2.8782 0.6541 23 6 3.6333 -1.5650 0.0012 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 0.5987 2.4412 0.0005 28 1 2.5925 3.7680 -2.1337 29 1 3.7475 4.7553 -1.2067 30 1 3.9117 2.9831 -1.2326 31 1 1.7949 5.8221 -0.3000 32 1 0.4080 4.6988 -0.4956 33 1 0.7206 6.0082 1.8507 34 1 0.2710 4.2753 1.8678 35 1 0.0687 6.7089 4.3466 36 1 3.3258 2.8838 1.7268 37 1 4.0650 4.3742 1.0777 38 1 1.7041 -3.0484 -0.9975 39 1 0.9547 -2.8583 0.6472 40 1 3.1470 -2.8415 1.7433 41 1 3.6775 -3.7620 0.2697 42 1 4.2623 -0.9534 0.6480 43 1 4.0512 -1.6967 -0.9969 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699816380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:16 Heat of formation + Delta-G solvation = 27.165651 kcal Electronic energy + Delta-G solvation = -22489.753594 eV Core-core repulsion = 19343.720427 eV Total energy + Delta-G solvation = -3146.033167 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.03342 -38.58493 -36.98735 -33.99055 -33.23447 -31.43020 -29.75007 -28.60789 -26.58421 -25.64906 -25.56952 -23.87840 -22.96214 -20.79639 -20.28648 -18.85180 -18.09779 -16.82656 -16.27986 -15.65122 -15.57318 -14.77554 -14.56319 -14.47115 -13.70394 -13.55173 -13.18279 -13.01950 -12.69881 -12.51991 -12.42304 -12.15922 -11.94336 -11.89472 -11.65810 -11.60770 -11.48689 -10.96607 -10.90090 -10.81362 -10.54958 -10.31826 -10.29062 -10.08030 -9.83851 -9.59837 -9.09792 -8.82039 -8.60898 -8.47148 -6.76818 -5.60949 -3.00970 1.49504 3.43859 3.47404 3.48433 3.49802 3.63209 4.40493 4.45428 4.53892 4.68009 5.00938 5.02659 5.19359 5.30094 5.44295 5.45640 5.54332 5.55994 5.59588 5.63076 5.68001 5.74592 5.79366 5.87363 6.05820 6.09210 6.17873 6.22736 6.26663 6.32917 6.42470 6.51256 6.57570 6.71445 6.78087 6.90570 7.23603 7.49663 7.66853 7.85489 8.00051 8.39342 8.67245 9.27461 9.87931 10.53584 11.43351 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.004679 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.718637 B = 5983.174761 C = 6483.546223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.161 4.161 3 C 0.557 3.443 4 O -0.539 6.539 5 N -0.705 5.705 6 C 0.160 3.840 7 C -0.150 4.150 8 C -0.147 4.147 9 C 0.154 3.846 10 N -0.604 5.604 11 C -0.217 4.217 12 H 0.076 0.924 13 C -0.013 4.013 14 N -0.926 5.926 15 Si 0.914 3.086 16 H -0.285 1.285 17 H -0.290 1.290 18 H -0.287 1.287 19 C 0.137 3.863 20 C -0.077 4.077 21 C -0.105 4.105 22 C -0.142 4.142 23 C -0.100 4.100 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.396 0.604 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.010 0.990 35 H 0.251 0.749 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.147 -13.946 -11.272 17.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.164 4.164 3 C 0.345 3.655 4 O -0.418 6.418 5 N -0.356 5.356 6 C 0.074 3.926 7 C -0.208 4.208 8 C -0.186 4.186 9 C 0.029 3.971 10 N -0.331 5.331 11 C -0.345 4.345 12 H 0.093 0.907 13 C -0.208 4.208 14 N -0.575 5.575 15 Si 0.745 3.255 16 H -0.212 1.212 17 H -0.216 1.216 18 H -0.213 1.213 19 C 0.011 3.989 20 C -0.079 4.079 21 C -0.142 4.142 22 C -0.179 4.179 23 C -0.136 4.136 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.232 0.768 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.027 0.973 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.358 -13.793 -11.076 17.693 hybrid contribution -0.364 0.247 1.001 1.094 sum -0.722 -13.546 -10.075 16.897 Atomic orbital electron populations 1.20675 0.90795 1.02522 1.02607 1.20610 0.95801 0.91786 1.08233 1.18113 0.87291 0.83619 0.76444 1.90714 1.13386 1.87615 1.50080 1.45926 1.09922 1.05215 1.74496 1.21324 0.92888 0.82773 0.95642 1.22045 0.99865 1.02871 0.96040 1.23353 0.97469 0.96195 1.01557 1.21922 0.87383 1.02957 0.84846 1.44608 1.14982 1.59997 1.13480 1.19059 1.00345 1.26060 0.89067 0.90661 1.24743 0.96386 1.00907 0.98738 1.69764 1.08844 1.42668 1.36209 0.86156 0.77268 0.78198 0.83926 1.21187 1.21598 1.21329 1.21685 0.93396 0.95101 0.88759 1.23337 0.97787 0.93386 0.93417 1.22307 0.98388 0.92035 1.01482 1.22817 0.96402 0.98087 1.00585 1.22282 0.94059 0.95667 1.01626 0.90984 0.91567 0.91498 0.76841 0.93289 0.91897 0.90797 0.90581 0.91994 0.87476 0.97252 0.93809 0.94889 0.95222 0.88570 0.90562 0.89878 0.90872 0.89397 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.56 36.01 0.34 -0.83 16 2 C -0.16 -2.25 6.00 -102.84 -0.62 -2.87 16 3 C 0.56 9.61 6.96 -12.67 -0.09 9.52 16 4 O -0.54 -10.68 12.06 5.27 0.06 -10.62 16 5 N -0.70 -11.85 5.09 -47.08 -0.24 -12.09 16 6 C 0.16 2.98 0.80 -129.98 -0.10 2.87 16 7 C -0.15 -2.47 8.41 37.16 0.31 -2.16 16 8 C -0.15 -2.74 6.08 -24.58 -0.15 -2.89 16 9 C 0.15 3.72 5.87 -2.53 -0.01 3.71 16 10 N -0.60 -16.04 3.41 -169.69 -0.58 -16.62 16 11 C -0.22 -6.27 10.28 -15.06 -0.15 -6.42 16 12 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 13 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 14 N -0.93 -27.13 10.09 55.49 0.56 -26.57 16 15 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 C 0.14 3.17 6.19 -2.81 -0.02 3.15 16 20 C -0.08 -0.98 6.56 -100.25 -0.66 -1.64 16 21 C -0.11 -0.97 7.77 -27.01 -0.21 -1.18 16 22 C -0.14 -1.34 8.10 -25.94 -0.21 -1.55 16 23 C -0.10 -1.21 7.07 -26.87 -0.19 -1.40 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.65 6.70 -51.93 -0.35 0.31 16 26 H 0.07 0.59 7.88 -51.93 -0.41 0.18 16 27 H 0.40 5.85 6.58 -40.82 -0.27 5.58 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 30 H 0.07 1.31 6.20 -51.93 -0.32 0.99 16 31 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 32 H 0.06 0.98 8.06 -51.93 -0.42 0.56 16 33 H 0.11 2.91 5.87 -51.93 -0.31 2.60 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.03 0.83 6.68 -51.93 -0.35 0.48 16 37 H 0.03 0.70 7.80 -51.93 -0.41 0.29 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 1.28 7.49 -51.93 -0.39 0.89 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 337.36 15.07 5.08 5.08 Total: -1.00 -32.26 337.36 -8.97 -41.23 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.98 Total: 4.20 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -1.85 Total: -2.16 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.26 Total: -55.28 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.06 Total: -10.62 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.26 -8.97 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699816380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.394 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds