Wall clock time and date at job start Tue Mar 31 2020 00:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.47103 * 120.00042 * 2 1 4 4 O 1.21610 * 119.99564 * 179.97438 * 3 2 1 5 5 N 1.34769 * 119.99930 * 0.02562 * 3 2 1 6 6 C 1.46503 * 119.99724 * 180.02562 * 5 3 2 7 7 C 1.53002 * 110.64339 * 59.29828 * 6 5 3 8 8 C 1.55158 * 110.72127 * 182.43665 * 6 5 3 9 9 C 1.54913 * 101.58119 * 82.85847 * 8 6 5 10 10 N 1.47425 * 104.83038 * 37.01324 * 9 8 6 11 11 C 1.36935 * 125.64852 * 155.91043 * 10 9 8 12 12 H 1.08002 * 119.99737 * 179.97438 * 11 10 9 13 13 C 1.38811 * 120.00028 * 359.97438 * 11 10 9 14 14 N 1.31614 * 120.00066 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99922 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47398 * 59.99769 * 15 13 11 17 17 H 1.48499 * 109.47055 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47102 * 299.99410 * 15 13 11 19 19 C 1.47486 * 108.75881 * 335.88999 * 10 9 8 20 20 C 1.32996 * 119.99837 * 179.97438 * 2 1 3 21 21 C 1.51578 * 135.77890 * 0.02562 * 20 2 1 22 22 C 1.53843 * 86.75571 * 205.15241 * 21 20 2 23 23 C 1.51866 * 135.78836 * 180.02562 * 20 2 1 24 24 H 1.08999 * 109.47485 * 270.00110 * 1 2 3 25 25 H 1.09003 * 109.46641 * 29.99976 * 1 2 3 26 26 H 1.08998 * 109.47113 * 149.99904 * 1 2 3 27 27 H 0.97000 * 120.00485 * 359.97438 * 5 3 2 28 28 H 1.08997 * 109.47095 * 60.69821 * 7 6 5 29 29 H 1.08998 * 109.47155 * 180.70141 * 7 6 5 30 30 H 1.09004 * 109.46825 * 300.70097 * 7 6 5 31 31 H 1.08999 * 111.00845 * 200.93602 * 8 6 5 32 32 H 1.09002 * 111.00457 * 324.75238 * 8 6 5 33 33 H 1.09004 * 110.36337 * 155.84833 * 9 8 6 34 34 H 1.08999 * 110.36812 * 278.17172 * 9 8 6 35 35 H 0.97001 * 120.00553 * 180.02562 * 14 13 11 36 36 H 1.09004 * 110.03516 * 241.66266 * 19 10 9 37 37 H 1.09001 * 109.96609 * 120.34809 * 19 10 9 38 38 H 1.09000 * 113.66387 * 90.68968 * 21 20 2 39 39 H 1.08997 * 113.67138 * 319.61604 * 21 20 2 40 40 H 1.09002 * 113.65913 * 89.69023 * 22 21 20 41 41 H 1.08998 * 113.65673 * 220.64232 * 22 21 20 42 42 H 1.09002 * 113.75816 * 40.40914 * 23 20 2 43 43 H 1.09001 * 113.66516 * 269.26079 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4586 1.2738 0.0005 5 7 1.5687 2.4411 0.0005 6 6 2.3013 3.7098 0.0000 7 6 3.2031 3.8114 -1.2318 8 6 1.3202 4.9102 0.0624 9 6 1.0342 4.9993 1.5823 10 7 2.3187 4.6725 2.2278 11 6 2.6997 5.0553 3.4861 12 1 3.6660 4.7632 3.8700 13 6 1.8439 5.8187 4.2683 14 7 0.6666 6.1751 3.8003 15 14 2.3640 6.3415 5.9846 16 1 3.5994 7.1612 5.8994 17 1 1.2804 7.1435 6.6074 18 1 2.6258 5.1359 6.8112 19 6 3.1262 3.8645 1.2950 20 6 2.1720 -1.1518 0.0005 21 6 1.7996 -2.6211 0.0007 22 6 3.1684 -2.8782 0.6541 23 6 3.6333 -1.5650 0.0012 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 0.5987 2.4412 0.0005 28 1 2.5925 3.7680 -2.1337 29 1 3.7475 4.7553 -1.2067 30 1 3.9117 2.9831 -1.2326 31 1 1.7949 5.8221 -0.3000 32 1 0.4080 4.6988 -0.4956 33 1 0.7206 6.0082 1.8507 34 1 0.2710 4.2753 1.8678 35 1 0.0687 6.7089 4.3466 36 1 3.3258 2.8838 1.7268 37 1 4.0650 4.3742 1.0777 38 1 1.7041 -3.0484 -0.9975 39 1 0.9547 -2.8583 0.6472 40 1 3.1470 -2.8415 1.7433 41 1 3.6775 -3.7620 0.2697 42 1 4.2623 -0.9534 0.6480 43 1 4.0512 -1.6967 -0.9969 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699816380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:15 Heat of formation + Delta-G solvation = 7.206703 kcal Electronic energy + Delta-G solvation = -22490.619079 eV Core-core repulsion = 19343.720427 eV Total energy + Delta-G solvation = -3146.898652 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.38173 -39.71264 -38.48416 -35.71938 -34.48607 -33.14408 -31.39731 -30.34333 -27.56061 -27.45968 -26.43067 -25.55574 -24.24427 -22.27304 -21.84374 -20.35248 -19.39948 -18.70711 -17.40165 -17.19065 -16.72152 -16.47468 -15.97261 -15.81362 -15.54216 -14.79241 -14.64988 -14.33077 -14.06409 -13.91368 -13.56748 -13.35336 -13.31680 -13.28569 -13.03629 -12.85882 -12.77940 -12.76892 -12.43422 -12.11341 -12.05247 -11.98742 -11.83722 -11.69245 -11.56429 -11.33468 -10.76186 -10.45090 -10.05000 -9.69479 -8.90579 -7.79807 -5.23583 0.42725 1.43654 1.46813 1.53461 2.20267 2.38271 2.47429 3.28985 3.44221 3.56450 3.64737 3.68754 3.84330 4.01495 4.04584 4.17034 4.26060 4.43725 4.61528 4.65215 4.74373 4.75828 4.77631 4.81278 4.82848 4.85859 4.89402 4.99908 5.01854 5.04438 5.08459 5.10622 5.32350 5.37746 5.38411 5.40315 5.59898 5.69866 5.78329 5.79162 6.29087 6.69727 7.09652 7.36095 7.74923 8.39421 9.21400 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.004679 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.718637 B = 5983.174761 C = 6483.546223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.186 4.186 3 C 0.548 3.452 4 O -0.574 6.574 5 N -0.702 5.702 6 C 0.169 3.831 7 C -0.140 4.140 8 C -0.127 4.127 9 C 0.157 3.843 10 N -0.623 5.623 11 C -0.246 4.246 12 H 0.068 0.932 13 C -0.059 4.059 14 N -0.943 5.943 15 Si 0.979 3.021 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.283 1.283 19 C 0.137 3.863 20 C -0.081 4.081 21 C -0.089 4.089 22 C -0.133 4.133 23 C -0.113 4.113 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.407 0.593 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.077 0.923 34 H -0.008 1.008 35 H 0.249 0.751 36 H 0.005 0.995 37 H 0.021 0.979 38 H 0.123 0.877 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.052 0.948 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.209 -15.342 -12.514 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.189 4.189 3 C 0.338 3.662 4 O -0.456 6.456 5 N -0.353 5.353 6 C 0.083 3.917 7 C -0.198 4.198 8 C -0.166 4.166 9 C 0.032 3.968 10 N -0.350 5.350 11 C -0.375 4.375 12 H 0.086 0.914 13 C -0.252 4.252 14 N -0.593 5.593 15 Si 0.807 3.193 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.210 1.210 19 C 0.011 3.989 20 C -0.083 4.083 21 C -0.125 4.125 22 C -0.170 4.170 23 C -0.150 4.150 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.244 0.756 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.010 0.990 35 H 0.059 0.941 36 H 0.023 0.977 37 H 0.039 0.961 38 H 0.141 0.859 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.116 0.884 42 H 0.071 0.929 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.441 -15.200 -12.337 19.629 hybrid contribution 0.052 0.639 1.426 1.563 sum -1.389 -14.561 -10.911 18.248 Atomic orbital electron populations 1.20687 0.88409 1.04144 1.02740 1.20681 0.97396 0.90363 1.10478 1.18780 0.87186 0.84782 0.75466 1.90694 1.15022 1.88196 1.51665 1.45861 1.10429 1.04607 1.74430 1.21152 0.92743 0.83748 0.94107 1.21953 0.99491 1.02509 0.95854 1.23208 0.99175 0.96571 0.97656 1.21748 0.86117 1.00466 0.88482 1.44891 1.16168 1.60438 1.13473 1.19341 1.00534 1.26920 0.90737 0.91421 1.25543 0.96473 1.00797 1.02355 1.69999 1.09426 1.42665 1.37178 0.85157 0.77111 0.77751 0.79311 1.20356 1.21152 1.20962 1.21742 0.93796 0.92899 0.90445 1.23897 0.98298 0.95133 0.90974 1.22375 0.98435 0.88642 1.03080 1.22790 0.96745 0.97327 1.00161 1.22408 0.93659 0.97059 1.01850 0.91499 0.90843 0.89016 0.75557 0.90444 0.91343 0.92367 0.89767 0.88120 0.90470 0.99043 0.94098 0.97728 0.96086 0.85944 0.89115 0.90554 0.88364 0.92940 0.87830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.02 9.56 71.24 0.68 -1.33 16 2 C -0.19 -5.04 6.00 -18.70 -0.11 -5.15 16 3 C 0.55 19.07 6.96 86.57 0.60 19.67 16 4 O -0.57 -23.63 12.06 -4.06 -0.05 -23.68 16 5 N -0.70 -23.28 5.09 -421.11 -2.14 -25.43 16 6 C 0.17 6.24 0.80 4.79 0.00 6.24 16 7 C -0.14 -4.44 8.41 71.98 0.61 -3.83 16 8 C -0.13 -4.59 6.08 31.99 0.19 -4.40 16 9 C 0.16 7.69 5.87 86.86 0.51 8.20 16 10 N -0.62 -34.15 3.41 -690.79 -2.35 -36.50 16 11 C -0.25 -14.70 10.28 84.03 0.86 -13.84 16 12 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 13 C -0.06 -3.42 5.49 84.86 0.47 -2.95 16 14 N -0.94 -56.29 10.09 21.65 0.22 -56.07 16 15 Si 0.98 46.97 29.55 68.60 2.03 49.00 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 17 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 18 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 19 C 0.14 6.58 6.19 86.64 0.54 7.11 16 20 C -0.08 -1.96 6.56 -17.02 -0.11 -2.07 16 21 C -0.09 -1.34 7.77 30.41 0.24 -1.11 16 22 C -0.13 -2.24 8.10 31.11 0.25 -1.99 16 23 C -0.11 -2.71 7.07 30.51 0.22 -2.50 16 24 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.29 6.70 -2.39 -0.02 1.28 16 26 H 0.09 1.32 7.88 -2.39 -0.02 1.30 16 27 H 0.41 11.53 6.58 -92.71 -0.61 10.92 16 28 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 30 H 0.06 2.06 6.20 -2.38 -0.01 2.04 16 31 H 0.08 2.93 8.05 -2.39 -0.02 2.91 16 32 H 0.10 2.87 8.06 -2.39 -0.02 2.85 16 33 H 0.08 4.29 5.87 -2.38 -0.01 4.27 16 34 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.00 0.25 6.68 -2.39 -0.02 0.23 16 37 H 0.02 1.03 7.80 -2.39 -0.02 1.01 16 38 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 42 H 0.05 1.62 7.49 -2.39 -0.02 1.61 16 43 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -73.08 337.36 3.03 -70.05 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.39 Total: 20.58 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 4.94 Total: 2.05 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -4.28 Total: -118.00 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.05 Total: -23.68 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -73.08 3.03 -70.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699816380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.253 kcal (2) G-P(sol) polarization free energy of solvation -73.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds