Wall clock time and date at job start Tue Mar 31 2020 00:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47204 * 1 3 3 C 1.17404 * 179.97438 * 2 1 4 4 C 1.47198 * 179.97438 * 230.12433 * 3 2 1 5 5 C 1.52994 * 109.47035 * 235.60229 * 4 3 2 6 6 C 1.52998 * 109.47305 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47565 * 179.97438 * 6 5 4 8 8 O 1.21286 * 120.00029 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00550 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99795 * 0.02562 * 9 7 6 11 11 C 1.46497 * 120.00541 * 179.97438 * 9 7 6 12 12 C 1.53784 * 113.61569 * 240.00166 * 11 9 7 13 13 C 1.53787 * 87.07923 * 220.01663 * 12 11 9 14 14 N 1.46501 * 113.61128 * 139.98386 * 13 12 11 15 15 C 1.36937 * 119.99940 * 155.00138 * 14 13 12 16 16 H 1.07995 * 119.99838 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99758 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99932 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99944 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46803 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47215 * 119.99627 * 19 17 15 22 22 H 1.48496 * 109.46748 * 239.99992 * 19 17 15 23 23 C 1.53779 * 113.61581 * 142.50385 * 11 9 7 24 24 H 1.08991 * 109.47379 * 74.27637 * 1 2 3 25 25 H 1.08998 * 109.46571 * 194.28009 * 1 2 3 26 26 H 1.09005 * 109.46801 * 314.27199 * 1 2 3 27 27 H 1.08999 * 109.47507 * 115.59990 * 4 3 2 28 28 H 1.09005 * 109.46693 * 355.60264 * 4 3 2 29 29 H 1.09005 * 109.47448 * 59.99914 * 5 4 3 30 30 H 1.08999 * 109.47271 * 300.00036 * 5 4 3 31 31 H 1.08999 * 109.47305 * 59.99719 * 6 5 4 32 32 H 1.08999 * 109.47052 * 300.00252 * 6 5 4 33 33 H 1.09004 * 109.46666 * 269.99777 * 10 9 7 34 34 H 1.08999 * 109.47266 * 29.99467 * 10 9 7 35 35 H 1.08995 * 109.47412 * 150.00054 * 10 9 7 36 36 H 1.09002 * 112.90477 * 11.25212 * 11 9 7 37 37 H 1.09004 * 113.61451 * 105.47149 * 12 11 9 38 38 H 1.08994 * 113.61477 * 334.56451 * 12 11 9 39 39 H 1.09000 * 113.61529 * 270.88430 * 13 12 11 40 40 H 0.97005 * 120.00129 * 334.99728 * 14 13 12 41 41 H 0.97007 * 119.99563 * 179.97438 * 18 17 15 42 42 H 1.09006 * 113.61307 * 25.43652 * 23 11 9 43 43 H 1.09007 * 113.61642 * 254.53409 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1181 0.0016 0.0005 5 6 4.6270 0.8169 1.1909 6 6 6.1570 0.8175 1.1918 7 6 6.6583 1.6210 2.3640 8 8 5.8696 2.1424 3.1236 9 7 7.9832 1.7604 2.5682 10 6 8.9361 1.1312 1.6504 11 6 8.4706 2.5420 3.7074 12 6 9.3406 3.7439 3.3028 13 6 10.2387 3.3972 4.5020 14 7 11.6698 3.5435 4.2250 15 6 12.5455 3.7776 5.2514 16 1 12.1811 3.8547 6.2651 17 6 13.9016 3.9157 4.9889 18 7 14.3457 3.8212 3.7536 19 14 15.0963 4.2343 6.3892 20 1 14.3503 4.2963 7.6717 21 1 16.0936 3.1356 6.4487 22 1 15.7944 5.5248 6.1602 23 6 9.7293 1.9526 4.3654 24 1 -0.3633 0.2785 -0.9891 25 1 -0.3632 -0.9959 0.2535 26 1 -0.3633 0.7174 0.7359 27 1 4.4814 0.4459 -0.9261 28 1 4.4820 -1.0228 0.0794 29 1 4.2637 0.3726 2.1176 30 1 4.2629 1.8412 1.1120 31 1 6.5207 1.2615 0.2652 32 1 6.5207 -0.2070 1.2710 33 1 9.1720 0.1273 2.0036 34 1 8.4965 1.0719 0.6547 35 1 9.8486 1.7259 1.6099 36 1 7.6830 2.7926 4.4180 37 1 8.8325 4.7033 3.4008 38 1 9.8333 3.6212 2.3384 39 1 9.9345 3.8816 5.4299 40 1 11.9971 3.4745 3.3144 41 1 15.2933 3.9181 3.5701 42 1 10.3284 1.3403 3.6914 43 1 9.5352 1.4659 5.3213 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701023127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:48 Heat of formation + Delta-G solvation = 29.332240 kcal Electronic energy + Delta-G solvation = -20631.288797 eV Core-core repulsion = 17485.349580 eV Total energy + Delta-G solvation = -3145.939217 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.16734 -38.14682 -35.87810 -34.76699 -33.55002 -33.02070 -30.22712 -29.61427 -26.96275 -26.89492 -25.13357 -24.45976 -23.00712 -21.51120 -19.31854 -18.75495 -17.26875 -17.10538 -16.69452 -16.23732 -15.94739 -14.98134 -14.59604 -14.54856 -14.13470 -13.98218 -13.91373 -13.48469 -13.25827 -13.02683 -12.92877 -12.53091 -12.51726 -12.27494 -11.99094 -11.81323 -11.60833 -11.25373 -11.11606 -10.92159 -10.58152 -10.46606 -10.24986 -10.01201 -9.99312 -9.92432 -9.72710 -9.49926 -8.91982 -8.41661 -7.00595 -5.82366 -3.11060 2.45691 2.49848 2.68645 3.11507 3.40691 3.47031 3.48865 3.98427 4.47324 4.56581 4.75774 4.79654 5.03399 5.10583 5.13192 5.19108 5.21279 5.26622 5.30793 5.33756 5.37072 5.41076 5.42227 5.44310 5.56711 5.70056 5.76472 5.85135 5.91139 5.96111 6.07909 6.15991 6.28134 6.33543 6.46017 6.55886 6.81004 7.03312 7.43580 7.55286 7.67679 8.25943 8.36199 9.47714 10.04365 10.39093 11.40079 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.062231 B = 0.002354 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.831766 B =11891.398534 C =12126.560522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.200 4.200 3 C -0.183 4.183 4 C -0.007 4.007 5 C -0.099 4.099 6 C -0.140 4.140 7 C 0.510 3.490 8 O -0.548 6.548 9 N -0.600 5.600 10 C 0.074 3.926 11 C 0.115 3.885 12 C -0.163 4.163 13 C 0.169 3.831 14 N -0.710 5.710 15 C -0.243 4.243 16 H 0.073 0.927 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.908 3.092 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.174 4.174 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.083 0.917 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.521 -8.966 -9.591 24.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.200 4.200 3 C -0.183 4.183 4 C -0.044 4.044 5 C -0.137 4.137 6 C -0.180 4.180 7 C 0.298 3.702 8 O -0.425 6.425 9 N -0.332 5.332 10 C -0.069 4.069 11 C 0.012 3.988 12 C -0.203 4.203 13 C 0.056 3.944 14 N -0.348 5.348 15 C -0.375 4.375 16 H 0.091 0.909 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.216 4.216 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.130 0.870 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.796 -8.637 -9.015 24.256 hybrid contribution 0.986 0.031 0.292 1.029 sum -19.810 -8.607 -8.724 23.294 Atomic orbital electron populations 1.18836 0.84776 1.02952 1.02929 1.22423 0.93989 1.01885 1.01684 1.22343 0.93671 1.01117 1.01181 1.18716 0.84451 1.01537 0.99650 1.21285 0.93126 1.01339 0.97951 1.21714 0.97111 1.01334 0.97837 1.20655 0.82079 0.80899 0.86575 1.90680 1.54924 1.49119 1.47826 1.47906 1.05509 1.51582 1.28173 1.21802 0.94258 0.98281 0.92547 1.22589 0.95491 0.92685 0.88024 1.23921 0.98089 0.97321 1.00954 1.21349 0.85046 0.92454 0.95525 1.42359 1.00081 1.84530 1.07795 1.19370 0.88189 1.40998 0.88914 0.90929 1.24763 0.97052 1.02639 0.96438 1.69668 1.13859 1.56920 1.17636 0.86107 0.81254 0.77434 0.81340 1.20487 1.21847 1.21840 1.24314 0.95403 1.01783 1.00112 0.90352 0.90346 0.90197 0.89560 0.89570 0.90833 0.90807 0.88726 0.88765 0.92450 0.91258 0.90067 0.86951 0.91819 0.90113 0.90286 0.78129 0.93512 0.89891 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.24 10.32 34.37 0.35 0.11 16 2 C -0.20 -2.01 14.13 -37.12 -0.52 -2.54 16 3 C -0.18 -1.91 13.34 -37.12 -0.50 -2.41 16 4 C -0.01 -0.06 5.70 -29.52 -0.17 -0.22 16 5 C -0.10 -0.96 4.46 -26.74 -0.12 -1.08 16 6 C -0.14 -1.25 4.25 -27.89 -0.12 -1.37 16 7 C 0.51 6.92 7.67 -10.99 -0.08 6.84 16 8 O -0.55 -9.53 15.47 5.55 0.09 -9.44 16 9 N -0.60 -8.05 3.08 -173.00 -0.53 -8.58 16 10 C 0.07 0.78 8.85 59.85 0.53 1.31 16 11 C 0.12 1.80 4.20 -67.12 -0.28 1.52 16 12 C -0.16 -2.71 7.37 -25.91 -0.19 -2.91 16 13 C 0.17 3.30 4.48 -67.12 -0.30 3.00 16 14 N -0.71 -17.36 5.40 -52.64 -0.28 -17.65 16 15 C -0.24 -6.66 9.97 -15.06 -0.15 -6.81 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 19 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 C -0.17 -2.96 7.30 -25.92 -0.19 -3.15 16 24 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 30 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.09 0.66 7.40 -51.93 -0.38 0.28 16 32 H 0.09 0.66 8.11 -51.93 -0.42 0.24 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.53 6.44 -51.93 -0.33 0.20 16 35 H 0.08 0.96 6.33 -51.93 -0.33 0.63 16 36 H 0.11 1.86 7.24 -51.93 -0.38 1.49 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.34 6.89 -51.93 -0.36 0.99 16 39 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 40 H 0.38 9.89 7.92 -40.82 -0.32 9.57 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.08 1.43 6.72 -51.93 -0.35 1.08 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 358.08 15.07 5.40 5.40 Total: -1.00 -33.01 358.08 -8.53 -41.55 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.06 Total: 6.70 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -1.84 Total: -8.17 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.09 Total: -53.14 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.01 -8.53 -41.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701023127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.881 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds