Wall clock time and date at job start Tue Mar 31 2020 00:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47204 * 1 3 3 C 1.17404 * 179.97438 * 2 1 4 4 C 1.47198 * 179.97438 * 230.12433 * 3 2 1 5 5 C 1.52994 * 109.47035 * 235.60229 * 4 3 2 6 6 C 1.52998 * 109.47305 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47565 * 179.97438 * 6 5 4 8 8 O 1.21286 * 120.00029 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00550 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99795 * 0.02562 * 9 7 6 11 11 C 1.46497 * 120.00541 * 179.97438 * 9 7 6 12 12 C 1.53784 * 113.61569 * 240.00166 * 11 9 7 13 13 C 1.53787 * 87.07923 * 220.01663 * 12 11 9 14 14 N 1.46501 * 113.61128 * 139.98386 * 13 12 11 15 15 C 1.36937 * 119.99940 * 155.00138 * 14 13 12 16 16 H 1.07995 * 119.99838 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99758 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99932 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99944 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46803 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47215 * 119.99627 * 19 17 15 22 22 H 1.48496 * 109.46748 * 239.99992 * 19 17 15 23 23 C 1.53779 * 113.61581 * 142.50385 * 11 9 7 24 24 H 1.08991 * 109.47379 * 74.27637 * 1 2 3 25 25 H 1.08998 * 109.46571 * 194.28009 * 1 2 3 26 26 H 1.09005 * 109.46801 * 314.27199 * 1 2 3 27 27 H 1.08999 * 109.47507 * 115.59990 * 4 3 2 28 28 H 1.09005 * 109.46693 * 355.60264 * 4 3 2 29 29 H 1.09005 * 109.47448 * 59.99914 * 5 4 3 30 30 H 1.08999 * 109.47271 * 300.00036 * 5 4 3 31 31 H 1.08999 * 109.47305 * 59.99719 * 6 5 4 32 32 H 1.08999 * 109.47052 * 300.00252 * 6 5 4 33 33 H 1.09004 * 109.46666 * 269.99777 * 10 9 7 34 34 H 1.08999 * 109.47266 * 29.99467 * 10 9 7 35 35 H 1.08995 * 109.47412 * 150.00054 * 10 9 7 36 36 H 1.09002 * 112.90477 * 11.25212 * 11 9 7 37 37 H 1.09004 * 113.61451 * 105.47149 * 12 11 9 38 38 H 1.08994 * 113.61477 * 334.56451 * 12 11 9 39 39 H 1.09000 * 113.61529 * 270.88430 * 13 12 11 40 40 H 0.97005 * 120.00129 * 334.99728 * 14 13 12 41 41 H 0.97007 * 119.99563 * 179.97438 * 18 17 15 42 42 H 1.09006 * 113.61307 * 25.43652 * 23 11 9 43 43 H 1.09007 * 113.61642 * 254.53409 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1181 0.0016 0.0005 5 6 4.6270 0.8169 1.1909 6 6 6.1570 0.8175 1.1918 7 6 6.6583 1.6210 2.3640 8 8 5.8696 2.1424 3.1236 9 7 7.9832 1.7604 2.5682 10 6 8.9361 1.1312 1.6504 11 6 8.4706 2.5420 3.7074 12 6 9.3406 3.7439 3.3028 13 6 10.2387 3.3972 4.5020 14 7 11.6698 3.5435 4.2250 15 6 12.5455 3.7776 5.2514 16 1 12.1811 3.8547 6.2651 17 6 13.9016 3.9157 4.9889 18 7 14.3457 3.8212 3.7536 19 14 15.0963 4.2343 6.3892 20 1 14.3503 4.2963 7.6717 21 1 16.0936 3.1356 6.4487 22 1 15.7944 5.5248 6.1602 23 6 9.7293 1.9526 4.3654 24 1 -0.3633 0.2785 -0.9891 25 1 -0.3632 -0.9959 0.2535 26 1 -0.3633 0.7174 0.7359 27 1 4.4814 0.4459 -0.9261 28 1 4.4820 -1.0228 0.0794 29 1 4.2637 0.3726 2.1176 30 1 4.2629 1.8412 1.1120 31 1 6.5207 1.2615 0.2652 32 1 6.5207 -0.2070 1.2710 33 1 9.1720 0.1273 2.0036 34 1 8.4965 1.0719 0.6547 35 1 9.8486 1.7259 1.6099 36 1 7.6830 2.7926 4.4180 37 1 8.8325 4.7033 3.4008 38 1 9.8333 3.6212 2.3384 39 1 9.9345 3.8816 5.4299 40 1 11.9971 3.4745 3.3144 41 1 15.2933 3.9181 3.5701 42 1 10.3284 1.3403 3.6914 43 1 9.5352 1.4659 5.3213 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701023127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:48 Heat of formation + Delta-G solvation = 9.766068 kcal Electronic energy + Delta-G solvation = -20632.137250 eV Core-core repulsion = 17485.349580 eV Total energy + Delta-G solvation = -3146.787670 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.32970 -39.46942 -36.62093 -36.16071 -34.89094 -34.10765 -31.97594 -30.44875 -27.94523 -27.64444 -26.57943 -26.15255 -24.29379 -22.60556 -20.64824 -19.97395 -19.04214 -18.26268 -17.69770 -17.07843 -17.00311 -16.33427 -16.08722 -15.76113 -15.26034 -14.98993 -14.66628 -14.48294 -14.43978 -14.08409 -14.04329 -13.55827 -13.33720 -13.23862 -13.14892 -13.13219 -13.11206 -12.80447 -12.37701 -12.21643 -12.12035 -11.97084 -11.84255 -11.67325 -11.41660 -10.89688 -10.80366 -10.60181 -10.56296 -9.55910 -8.99202 -7.95478 -5.23477 1.48200 1.48759 1.58622 1.65261 1.71870 1.79123 2.09300 2.56865 3.36464 3.37813 3.58202 3.77857 3.82051 3.94571 4.07467 4.10179 4.20452 4.28088 4.33297 4.49554 4.61196 4.67315 4.74546 4.75446 4.76660 4.82863 4.84523 4.84973 4.88361 4.89201 5.01860 5.10031 5.13484 5.16187 5.21444 5.33562 5.44283 5.52924 5.68149 6.26896 6.50459 6.74102 7.21166 7.33745 8.08373 8.32876 9.27685 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.062231 B = 0.002354 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.831766 B =11891.398534 C =12126.560522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.220 4.220 3 C -0.215 4.215 4 C -0.002 4.002 5 C -0.092 4.092 6 C -0.129 4.129 7 C 0.503 3.497 8 O -0.594 6.594 9 N -0.601 5.601 10 C 0.069 3.931 11 C 0.129 3.871 12 C -0.149 4.149 13 C 0.151 3.849 14 N -0.722 5.722 15 C -0.245 4.245 16 H 0.075 0.925 17 C -0.073 4.073 18 N -0.967 5.967 19 Si 0.971 3.029 20 H -0.268 1.268 21 H -0.293 1.293 22 H -0.294 1.294 23 C -0.159 4.159 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.376 0.624 41 H 0.251 0.749 42 H 0.083 0.917 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.253 -10.160 -10.524 25.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.220 4.220 3 C -0.215 4.215 4 C -0.038 4.038 5 C -0.131 4.131 6 C -0.168 4.168 7 C 0.293 3.707 8 O -0.475 6.475 9 N -0.332 5.332 10 C -0.073 4.073 11 C 0.025 3.975 12 C -0.190 4.190 13 C 0.041 3.959 14 N -0.359 5.359 15 C -0.377 4.377 16 H 0.093 0.907 17 C -0.265 4.265 18 N -0.617 5.617 19 Si 0.800 3.200 20 H -0.192 1.192 21 H -0.220 1.220 22 H -0.222 1.222 23 C -0.201 4.201 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.208 0.792 41 H 0.060 0.940 42 H 0.101 0.899 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.569 -9.854 -9.948 25.716 hybrid contribution 1.098 0.402 0.589 1.309 sum -20.471 -9.452 -9.359 24.413 Atomic orbital electron populations 1.19050 0.82762 1.04042 1.04072 1.23422 0.95483 1.01709 1.01399 1.23128 0.94974 1.01636 1.01756 1.18792 0.83128 1.02458 0.99443 1.21167 0.93835 1.00166 0.97901 1.21753 0.96163 1.02251 0.96645 1.21518 0.81487 0.80471 0.87204 1.90665 1.56005 1.51103 1.49738 1.47972 1.06249 1.51228 1.27772 1.22037 0.93300 0.98169 0.93814 1.22195 0.94487 0.92117 0.88727 1.23762 0.97373 0.98086 0.99729 1.21630 0.83069 0.94507 0.96704 1.42477 1.01716 1.85000 1.06755 1.19730 0.88879 1.39368 0.89712 0.90659 1.25520 0.98736 1.03646 0.98641 1.69805 1.13772 1.58765 1.19404 0.85111 0.78996 0.76735 0.79138 1.19239 1.22012 1.22152 1.24070 0.95774 0.99808 1.00428 0.88859 0.88971 0.89510 0.87557 0.87545 0.93033 0.93050 0.85721 0.85789 0.91233 0.87570 0.91579 0.88015 0.91623 0.89826 0.90725 0.79171 0.93997 0.89874 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.49 10.32 70.18 0.72 0.24 16 2 C -0.22 -4.28 14.13 31.13 0.44 -3.84 16 3 C -0.21 -4.28 13.34 31.12 0.42 -3.87 16 4 C 0.00 -0.03 5.70 28.79 0.16 0.14 16 5 C -0.09 -1.66 4.46 30.59 0.14 -1.53 16 6 C -0.13 -1.89 4.25 29.85 0.13 -1.77 16 7 C 0.50 12.80 7.67 87.66 0.67 13.47 16 8 O -0.59 -20.62 15.47 -3.05 -0.05 -20.67 16 9 N -0.60 -14.98 3.08 -819.64 -2.53 -17.50 16 10 C 0.07 1.24 8.85 127.77 1.13 2.37 16 11 C 0.13 3.93 4.20 45.52 0.19 4.12 16 12 C -0.15 -4.91 7.37 31.12 0.23 -4.68 16 13 C 0.15 5.90 4.48 45.52 0.20 6.10 16 14 N -0.72 -35.52 5.40 -320.44 -1.73 -37.25 16 15 C -0.25 -13.43 9.97 84.03 0.84 -12.59 16 16 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 17 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 18 N -0.97 -57.92 13.06 21.65 0.28 -57.64 16 19 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 23 C -0.16 -5.29 7.30 31.12 0.23 -5.07 16 24 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.05 1.14 8.10 -2.38 -0.02 1.12 16 30 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 31 H 0.12 1.15 7.40 -2.39 -0.02 1.14 16 32 H 0.12 1.17 8.11 -2.39 -0.02 1.15 16 33 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.11 1.14 6.44 -2.39 -0.02 1.12 16 35 H 0.07 1.43 6.33 -2.39 -0.02 1.42 16 36 H 0.10 3.36 7.24 -2.39 -0.02 3.34 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.08 2.72 6.89 -2.39 -0.02 2.70 16 39 H 0.07 2.95 8.10 -2.39 -0.02 2.93 16 40 H 0.38 19.58 7.92 -92.70 -0.73 18.84 16 41 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 42 H 0.08 2.78 6.72 -2.38 -0.02 2.77 16 43 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -72.70 358.08 4.23 -68.47 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.26 Total: 27.46 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 5.97 Total: -10.57 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -3.98 Total: -112.39 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.05 Total: -20.67 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -72.70 4.23 -68.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701023127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.237 kcal (2) G-P(sol) polarization free energy of solvation -72.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds