Wall clock time and date at job start Tue Mar 31 2020 00:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.47100 * 120.00345 * 2 1 4 4 O 1.21609 * 120.00307 * 179.97438 * 3 2 1 5 5 N 1.34783 * 119.99962 * 359.97438 * 3 2 1 6 6 C 1.46496 * 120.00322 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47269 * 180.02562 * 6 5 3 8 8 H 1.09001 * 112.84844 * 316.19313 * 7 6 5 9 9 C 1.53779 * 113.61561 * 87.50029 * 7 6 5 10 10 C 1.53784 * 87.08045 * 139.98260 * 9 7 6 11 11 H 1.08994 * 113.61477 * 89.11454 * 10 9 7 12 12 N 1.46496 * 113.61320 * 220.02163 * 10 9 7 13 13 C 1.36942 * 119.99927 * 252.49586 * 12 10 9 14 14 H 1.08001 * 119.99962 * 0.02562 * 13 12 10 15 15 C 1.38812 * 119.99989 * 179.97438 * 13 12 10 16 16 N 1.31625 * 120.00018 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99999 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47169 * 90.00021 * 17 15 13 19 19 H 1.48504 * 109.47093 * 209.99695 * 17 15 13 20 20 H 1.48502 * 109.47403 * 329.99478 * 17 15 13 21 21 C 1.53779 * 113.61250 * 185.00070 * 7 6 5 22 22 C 1.32993 * 119.99842 * 179.97438 * 2 1 3 23 23 C 1.51410 * 136.31542 * 179.62678 * 22 2 1 24 24 C 1.53372 * 87.51617 * 206.05898 * 23 22 2 25 25 C 1.51401 * 136.31855 * 0.02562 * 22 2 1 26 26 H 1.09003 * 109.47206 * 89.99899 * 1 2 3 27 27 H 1.09002 * 109.47122 * 210.00224 * 1 2 3 28 28 H 1.09000 * 109.47047 * 330.00281 * 1 2 3 29 29 H 0.97001 * 119.99387 * 0.02562 * 5 3 2 30 30 H 1.09007 * 109.47181 * 59.99801 * 6 5 3 31 31 H 1.08998 * 109.47105 * 300.00326 * 6 5 3 32 32 H 1.09002 * 113.61557 * 25.43372 * 9 7 6 33 33 H 1.09004 * 113.61501 * 254.52792 * 9 7 6 34 34 H 0.97002 * 120.00490 * 72.49429 * 12 10 9 35 35 H 0.96994 * 120.00136 * 180.02562 * 16 15 13 36 36 H 1.08997 * 113.61646 * 105.47109 * 21 7 6 37 37 H 1.08998 * 113.69354 * 334.57417 * 21 7 6 38 38 H 1.08997 * 113.56272 * 320.64269 * 23 22 2 39 39 H 1.09006 * 113.55565 * 91.37555 * 23 22 2 40 40 H 1.09008 * 113.96730 * 220.29134 * 24 23 22 41 41 H 1.09000 * 113.60096 * 88.80421 * 24 23 22 42 42 H 1.08999 * 113.56152 * 268.62996 * 25 22 2 43 43 H 1.09002 * 113.56232 * 39.35874 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2739 0.0000 4 8 3.4586 1.2739 0.0005 5 7 1.5687 2.4412 -0.0005 6 6 2.3012 3.7099 -0.0011 7 6 1.3070 4.8728 -0.0010 8 1 0.4807 4.7233 -0.6959 9 6 0.8605 5.3014 1.4068 10 6 0.9483 6.7532 0.9070 11 1 0.0231 7.1182 0.4613 12 7 1.5112 7.6798 1.8922 13 6 0.6992 8.5833 2.5244 14 1 -0.3562 8.6124 2.2970 15 6 1.2325 9.4611 3.4583 16 7 0.4521 10.3298 4.0656 17 14 3.0578 9.4103 3.8521 18 1 3.7865 10.3286 2.9407 19 1 3.2727 9.8353 5.2587 20 1 3.5652 8.0265 3.6701 21 6 1.9736 6.2531 -0.1244 22 6 2.1719 -1.1518 0.0005 23 6 3.6250 -1.5772 -0.0061 24 6 3.1707 -2.8820 -0.6719 25 6 1.8138 -2.6228 0.0007 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 0.5987 2.4411 -0.0005 30 1 2.9279 3.7672 -0.8911 31 1 2.9279 3.7680 0.8888 32 1 1.5846 5.0633 2.1859 33 1 -0.1524 4.9868 1.6583 34 1 2.4590 7.6535 2.0968 35 1 0.8248 10.9434 4.7179 36 1 1.8593 6.7067 -1.1088 37 1 3.0021 6.2765 0.2357 38 1 4.2566 -0.9606 -0.6455 39 1 4.0420 -1.7189 0.9910 40 1 3.6834 -3.7699 -0.3016 41 1 3.1399 -2.8290 -1.7601 42 1 1.7335 -3.0516 0.9996 43 1 0.9603 -2.8636 -0.6332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707061498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:47 Heat of formation + Delta-G solvation = 27.251913 kcal Electronic energy + Delta-G solvation = -20949.604628 eV Core-core repulsion = 17803.575202 eV Total energy + Delta-G solvation = -3146.029426 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.18563 -38.97026 -38.20362 -34.77914 -33.64879 -32.95521 -30.71672 -27.63631 -26.86135 -25.81108 -25.20306 -23.94948 -22.92449 -21.02705 -20.68750 -19.42210 -18.29019 -17.42207 -16.67671 -16.23790 -15.88721 -15.40786 -15.01796 -14.58448 -14.46374 -14.07728 -13.70213 -13.50959 -13.03454 -12.74600 -12.73408 -12.66784 -12.27115 -12.17313 -11.97751 -11.89954 -11.60563 -11.58311 -11.27771 -10.89825 -10.77641 -10.48186 -10.28171 -10.15621 -9.84457 -9.70122 -9.53052 -9.21217 -8.93741 -8.88669 -7.27364 -5.78998 -3.14450 1.15052 3.11208 3.19197 3.37565 3.40819 3.45302 4.09205 4.20682 4.41445 4.57899 4.69935 4.76991 4.86850 4.88903 4.99504 5.12246 5.22863 5.30325 5.32349 5.37899 5.40560 5.43267 5.47619 5.57631 5.65267 5.74175 5.76457 5.80934 5.85204 5.91790 6.02921 6.17731 6.20248 6.23918 6.40310 6.44025 6.50916 6.69045 6.98136 7.50067 7.97460 8.20671 8.40917 9.18756 9.91595 10.11447 11.39234 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033527 B = 0.002802 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.958205 B = 9992.221614 C =10231.993838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.166 4.166 3 C 0.553 3.447 4 O -0.544 6.544 5 N -0.722 5.722 6 C 0.132 3.868 7 C -0.127 4.127 8 H 0.091 0.909 9 C -0.161 4.161 10 C 0.172 3.828 11 H 0.084 0.916 12 N -0.737 5.737 13 C -0.248 4.248 14 H 0.091 0.909 15 C 0.004 3.996 16 N -0.933 5.933 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.145 4.145 22 C -0.072 4.072 23 C -0.103 4.103 24 C -0.142 4.142 25 C -0.105 4.105 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.400 0.600 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.363 0.637 35 H 0.260 0.740 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.042 -26.030 -11.210 28.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.169 4.169 3 C 0.342 3.658 4 O -0.423 6.423 5 N -0.374 5.374 6 C 0.009 3.991 7 C -0.146 4.146 8 H 0.109 0.891 9 C -0.202 4.202 10 C 0.060 3.940 11 H 0.102 0.898 12 N -0.377 5.377 13 C -0.378 4.378 14 H 0.109 0.891 15 C -0.192 4.192 16 N -0.581 5.581 17 Si 0.714 3.286 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.185 4.185 22 C -0.074 4.074 23 C -0.139 4.139 24 C -0.180 4.180 25 C -0.142 4.142 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.236 0.764 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.196 0.804 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.117 0.883 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.716 -25.805 -11.104 28.145 hybrid contribution 0.766 0.091 0.423 0.880 sum 2.481 -25.714 -10.681 27.954 Atomic orbital electron populations 1.20681 0.90482 1.03064 1.02417 1.20486 0.95872 0.91391 1.09158 1.18249 0.87218 0.83883 0.76499 1.90767 1.13573 1.87783 1.50209 1.45983 1.10503 1.05768 1.75112 1.21415 0.94414 0.81220 1.02035 1.22639 0.98457 0.93663 0.99858 0.89105 1.23920 1.00841 1.00758 0.94669 1.21507 0.95471 0.87850 0.89123 0.89790 1.42767 1.07418 1.40498 1.47007 1.19139 0.93092 1.09011 1.16524 0.89142 1.24699 0.97334 0.98112 0.99018 1.69704 1.34227 1.23468 1.30673 0.86552 0.86745 0.77586 0.77675 1.21018 1.21706 1.20276 1.23464 1.00189 0.94236 1.00619 1.23233 0.98121 0.93673 0.92387 1.22173 0.94066 0.95822 1.01888 1.22714 0.96653 0.98229 1.00358 1.22285 0.98503 0.91663 1.01762 0.91127 0.91206 0.91350 0.76449 0.91755 0.91361 0.90461 0.92308 0.80441 0.93032 0.91619 0.90337 0.89649 0.88564 0.90467 0.89818 0.88261 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 9.57 36.00 0.34 -0.44 16 2 C -0.17 -1.72 6.00 -102.85 -0.62 -2.33 16 3 C 0.55 7.32 7.75 -12.66 -0.10 7.22 16 4 O -0.54 -9.08 15.15 5.27 0.08 -9.00 16 5 N -0.72 -8.36 5.50 -61.49 -0.34 -8.70 16 6 C 0.13 1.71 5.51 -4.04 -0.02 1.69 16 7 C -0.13 -1.62 3.75 -89.81 -0.34 -1.95 16 8 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 9 C -0.16 -2.54 7.43 -25.92 -0.19 -2.74 16 10 C 0.17 3.17 4.48 -67.12 -0.30 2.87 16 11 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 12 N -0.74 -17.32 5.21 -52.64 -0.27 -17.59 16 13 C -0.25 -6.96 10.45 -15.06 -0.16 -7.11 16 14 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 15 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 16 N -0.93 -29.32 13.97 55.49 0.78 -28.54 16 17 Si 0.88 22.24 27.74 -169.99 -4.71 17.52 16 18 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 21 C -0.15 -2.16 7.39 -25.92 -0.19 -2.36 16 22 C -0.07 -0.70 6.60 -100.48 -0.66 -1.36 16 23 C -0.10 -0.97 6.99 -27.56 -0.19 -1.16 16 24 C -0.14 -0.95 8.17 -26.21 -0.21 -1.16 16 25 C -0.11 -0.69 7.71 -27.42 -0.21 -0.90 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.43 7.91 -51.93 -0.41 0.02 16 28 H 0.07 0.45 6.70 -51.93 -0.35 0.10 16 29 H 0.40 3.66 6.57 -40.82 -0.27 3.39 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.00 7.84 -51.93 -0.41 0.59 16 32 H 0.08 1.33 7.90 -51.93 -0.41 0.92 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.36 8.43 5.78 -40.82 -0.24 8.19 16 35 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 38 H 0.08 0.97 7.49 -51.93 -0.39 0.58 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 349.76 15.07 5.27 5.27 Total: -1.00 -33.33 349.76 -9.28 -42.61 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.13 Total: 8.15 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -2.95 Total: -9.71 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.16 Total: -54.83 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -9.00 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.33 -9.28 -42.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707061498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.861 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds