Wall clock time and date at job start Tue Mar 31 2020 00:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.47100 * 120.00345 * 2 1 4 4 O 1.21609 * 120.00307 * 179.97438 * 3 2 1 5 5 N 1.34783 * 119.99962 * 359.97438 * 3 2 1 6 6 C 1.46496 * 120.00322 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47269 * 180.02562 * 6 5 3 8 8 H 1.09001 * 112.84844 * 316.19313 * 7 6 5 9 9 C 1.53779 * 113.61561 * 87.50029 * 7 6 5 10 10 C 1.53784 * 87.08045 * 139.98260 * 9 7 6 11 11 H 1.08994 * 113.61477 * 89.11454 * 10 9 7 12 12 N 1.46496 * 113.61320 * 220.02163 * 10 9 7 13 13 C 1.36942 * 119.99927 * 252.49586 * 12 10 9 14 14 H 1.08001 * 119.99962 * 0.02562 * 13 12 10 15 15 C 1.38812 * 119.99989 * 179.97438 * 13 12 10 16 16 N 1.31625 * 120.00018 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99999 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47169 * 90.00021 * 17 15 13 19 19 H 1.48504 * 109.47093 * 209.99695 * 17 15 13 20 20 H 1.48502 * 109.47403 * 329.99478 * 17 15 13 21 21 C 1.53779 * 113.61250 * 185.00070 * 7 6 5 22 22 C 1.32993 * 119.99842 * 179.97438 * 2 1 3 23 23 C 1.51410 * 136.31542 * 179.62678 * 22 2 1 24 24 C 1.53372 * 87.51617 * 206.05898 * 23 22 2 25 25 C 1.51401 * 136.31855 * 0.02562 * 22 2 1 26 26 H 1.09003 * 109.47206 * 89.99899 * 1 2 3 27 27 H 1.09002 * 109.47122 * 210.00224 * 1 2 3 28 28 H 1.09000 * 109.47047 * 330.00281 * 1 2 3 29 29 H 0.97001 * 119.99387 * 0.02562 * 5 3 2 30 30 H 1.09007 * 109.47181 * 59.99801 * 6 5 3 31 31 H 1.08998 * 109.47105 * 300.00326 * 6 5 3 32 32 H 1.09002 * 113.61557 * 25.43372 * 9 7 6 33 33 H 1.09004 * 113.61501 * 254.52792 * 9 7 6 34 34 H 0.97002 * 120.00490 * 72.49429 * 12 10 9 35 35 H 0.96994 * 120.00136 * 180.02562 * 16 15 13 36 36 H 1.08997 * 113.61646 * 105.47109 * 21 7 6 37 37 H 1.08998 * 113.69354 * 334.57417 * 21 7 6 38 38 H 1.08997 * 113.56272 * 320.64269 * 23 22 2 39 39 H 1.09006 * 113.55565 * 91.37555 * 23 22 2 40 40 H 1.09008 * 113.96730 * 220.29134 * 24 23 22 41 41 H 1.09000 * 113.60096 * 88.80421 * 24 23 22 42 42 H 1.08999 * 113.56152 * 268.62996 * 25 22 2 43 43 H 1.09002 * 113.56232 * 39.35874 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2739 0.0000 4 8 3.4586 1.2739 0.0005 5 7 1.5687 2.4412 -0.0005 6 6 2.3012 3.7099 -0.0011 7 6 1.3070 4.8728 -0.0010 8 1 0.4807 4.7233 -0.6959 9 6 0.8605 5.3014 1.4068 10 6 0.9483 6.7532 0.9070 11 1 0.0231 7.1182 0.4613 12 7 1.5112 7.6798 1.8922 13 6 0.6992 8.5833 2.5244 14 1 -0.3562 8.6124 2.2970 15 6 1.2325 9.4611 3.4583 16 7 0.4521 10.3298 4.0656 17 14 3.0578 9.4103 3.8521 18 1 3.7865 10.3286 2.9407 19 1 3.2727 9.8353 5.2587 20 1 3.5652 8.0265 3.6701 21 6 1.9736 6.2531 -0.1244 22 6 2.1719 -1.1518 0.0005 23 6 3.6250 -1.5772 -0.0061 24 6 3.1707 -2.8820 -0.6719 25 6 1.8138 -2.6228 0.0007 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 0.5987 2.4411 -0.0005 30 1 2.9279 3.7672 -0.8911 31 1 2.9279 3.7680 0.8888 32 1 1.5846 5.0633 2.1859 33 1 -0.1524 4.9868 1.6583 34 1 2.4590 7.6535 2.0968 35 1 0.8248 10.9434 4.7179 36 1 1.8593 6.7067 -1.1088 37 1 3.0021 6.2765 0.2357 38 1 4.2566 -0.9606 -0.6455 39 1 4.0420 -1.7189 0.9910 40 1 3.6834 -3.7699 -0.3016 41 1 3.1399 -2.8290 -1.7601 42 1 1.7335 -3.0516 0.9996 43 1 0.9603 -2.8636 -0.6332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707061498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:47 Heat of formation + Delta-G solvation = 5.600514 kcal Electronic energy + Delta-G solvation = -20950.543503 eV Core-core repulsion = 17803.575202 eV Total energy + Delta-G solvation = -3146.968302 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.13270 -40.07797 -39.12939 -36.13107 -35.14848 -33.93571 -32.67889 -28.87449 -27.46570 -26.48540 -26.41692 -25.67578 -23.90356 -22.42319 -21.56534 -20.82292 -19.44738 -19.11421 -17.46201 -17.28505 -16.75610 -16.59035 -16.26939 -15.99301 -15.82652 -15.18211 -14.77138 -14.60583 -14.47866 -13.96613 -13.83648 -13.34244 -13.31825 -13.27101 -13.18389 -13.03620 -12.86785 -12.71166 -12.46753 -12.14697 -11.92215 -11.88656 -11.70332 -11.63121 -11.39562 -11.12676 -10.89067 -10.64274 -10.16519 -9.71821 -9.27379 -8.03511 -5.35749 0.35964 1.36878 1.39069 1.46237 2.19140 2.25940 2.47007 3.26673 3.40639 3.57634 3.58495 3.70620 3.80542 3.83975 4.02146 4.07856 4.23551 4.26572 4.36156 4.42904 4.53501 4.70358 4.73705 4.76381 4.81849 4.84233 4.93840 4.96050 5.00064 5.01754 5.03932 5.08210 5.20411 5.32263 5.35371 5.38236 5.44819 5.64944 5.74231 5.77677 6.22625 6.59517 7.07295 7.25159 7.85700 8.03257 9.18031 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033527 B = 0.002802 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.958205 B = 9992.221614 C =10231.993838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.182 4.182 3 C 0.544 3.456 4 O -0.589 6.589 5 N -0.712 5.712 6 C 0.138 3.862 7 C -0.097 4.097 8 H 0.120 0.880 9 C -0.155 4.155 10 C 0.147 3.853 11 H 0.080 0.920 12 N -0.745 5.745 13 C -0.230 4.230 14 H 0.061 0.939 15 C -0.066 4.066 16 N -0.984 5.984 17 Si 0.953 3.047 18 H -0.278 1.278 19 H -0.297 1.297 20 H -0.256 1.256 21 C -0.136 4.136 22 C -0.082 4.082 23 C -0.118 4.118 24 C -0.132 4.132 25 C -0.092 4.092 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.414 0.586 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.364 0.636 35 H 0.257 0.743 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.115 0.885 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 -28.703 -12.482 31.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.185 4.185 3 C 0.334 3.666 4 O -0.471 6.471 5 N -0.364 5.364 6 C 0.014 3.986 7 C -0.116 4.116 8 H 0.138 0.862 9 C -0.196 4.196 10 C 0.038 3.962 11 H 0.098 0.902 12 N -0.386 5.386 13 C -0.362 4.362 14 H 0.079 0.921 15 C -0.258 4.258 16 N -0.635 5.635 17 Si 0.781 3.219 18 H -0.204 1.204 19 H -0.224 1.224 20 H -0.181 1.181 21 C -0.175 4.175 22 C -0.084 4.084 23 C -0.154 4.154 24 C -0.169 4.169 25 C -0.129 4.129 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.252 0.748 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.198 0.802 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.133 0.867 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.625 -28.533 -12.429 31.164 hybrid contribution 0.744 0.878 0.759 1.378 sum 2.368 -27.655 -11.669 30.110 Atomic orbital electron populations 1.20719 0.87965 1.03980 1.03492 1.20616 0.97496 0.90033 1.10394 1.18845 0.86940 0.85164 0.75613 1.90743 1.15554 1.88455 1.52379 1.45875 1.11162 1.04988 1.74372 1.21238 0.94328 0.81871 1.01165 1.22476 0.98640 0.92433 0.98086 0.86160 1.23747 1.01129 0.98552 0.96155 1.21930 0.96610 0.88070 0.89613 0.90164 1.42811 1.07107 1.40732 1.47908 1.19139 0.92357 1.08981 1.15681 0.92139 1.25499 1.02167 0.98397 0.99697 1.69878 1.36434 1.25035 1.32105 0.85438 0.81030 0.78592 0.76880 1.20396 1.22365 1.18074 1.23359 0.99025 0.95052 1.00104 1.23697 0.98355 0.95330 0.90998 1.22285 0.94003 0.97408 1.01745 1.22700 0.96687 0.97166 1.00363 1.22315 0.98871 0.88817 1.02871 0.89877 0.89843 0.90898 0.74812 0.91685 0.93357 0.91952 0.91461 0.80235 0.93403 0.89824 0.90629 0.92439 0.88615 0.88704 0.89632 0.86729 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 9.57 71.24 0.68 -0.51 16 2 C -0.18 -3.49 6.00 -18.70 -0.11 -3.61 16 3 C 0.54 14.04 7.75 86.57 0.67 14.71 16 4 O -0.59 -20.00 15.15 -4.06 -0.06 -20.06 16 5 N -0.71 -15.25 5.50 -466.71 -2.57 -17.82 16 6 C 0.14 3.33 5.51 86.38 0.48 3.80 16 7 C -0.10 -2.22 3.75 -10.27 -0.04 -2.25 16 8 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 9 C -0.16 -4.65 7.43 31.12 0.23 -4.42 16 10 C 0.15 5.23 4.48 45.52 0.20 5.44 16 11 H 0.08 2.91 8.10 -2.39 -0.02 2.89 16 12 N -0.74 -34.57 5.21 -320.44 -1.67 -36.23 16 13 C -0.23 -13.12 10.45 84.03 0.88 -12.24 16 14 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 15 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 16 N -0.98 -63.50 13.97 21.65 0.30 -63.20 16 17 Si 0.95 46.30 27.74 68.60 1.90 48.20 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 19 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 20 H -0.26 -11.39 6.52 99.48 0.65 -10.74 16 21 C -0.14 -3.73 7.39 31.12 0.23 -3.50 16 22 C -0.08 -1.46 6.60 -17.17 -0.11 -1.58 16 23 C -0.12 -2.18 6.99 30.06 0.21 -1.97 16 24 C -0.13 -1.49 8.17 30.93 0.25 -1.24 16 25 C -0.09 -0.94 7.71 30.15 0.23 -0.70 16 26 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.08 0.74 7.91 -2.39 -0.02 0.72 16 28 H 0.07 0.74 6.70 -2.39 -0.02 0.73 16 29 H 0.41 6.46 6.57 -92.71 -0.61 5.85 16 30 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.05 1.38 7.84 -2.39 -0.02 1.36 16 32 H 0.06 2.08 7.90 -2.39 -0.02 2.06 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.36 16.48 5.78 -92.71 -0.54 15.94 16 35 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.08 2.16 8.08 -2.39 -0.02 2.14 16 38 H 0.06 1.37 7.49 -2.39 -0.02 1.35 16 39 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -74.74 349.76 1.98 -72.76 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: -0.20 Total: 27.90 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 4.27 Total: -11.55 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -3.93 Total: -117.25 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.06 Total: -20.06 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.90 Total: 48.20 kcal Total: -74.74 1.98 -72.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707061498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.361 kcal (2) G-P(sol) polarization free energy of solvation -74.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds