Wall clock time and date at job start Tue Mar 31 2020 00:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17393 * 179.97438 * 2 1 4 4 C 1.47206 * 179.97438 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47021 * 130.25800 * 4 3 2 6 6 C 1.52996 * 109.46972 * 179.97438 * 5 4 3 7 7 C 1.50708 * 109.46729 * 180.02562 * 6 5 4 8 8 O 1.21275 * 119.99870 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99487 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99750 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47368 * 180.02562 * 10 9 7 12 12 H 1.09008 * 112.84550 * 43.80377 * 11 10 9 13 13 C 1.53781 * 113.61624 * 174.99938 * 11 10 9 14 14 C 1.53785 * 87.07956 * 139.98457 * 13 11 10 15 15 H 1.09001 * 113.60719 * 220.01939 * 14 13 11 16 16 N 1.46502 * 113.61607 * 89.20195 * 14 13 11 17 17 C 1.36938 * 119.99583 * 154.99969 * 16 14 13 18 18 H 1.07993 * 120.00456 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99553 * 180.02562 * 17 16 14 20 20 N 1.31615 * 119.99920 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99885 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47061 * 90.00352 * 21 19 17 23 23 H 1.48506 * 109.46808 * 209.99946 * 21 19 17 24 24 H 1.48492 * 109.47498 * 330.00081 * 21 19 17 25 25 C 1.53778 * 113.61642 * 272.49913 * 11 10 9 26 26 H 1.09001 * 109.47046 * 229.74167 * 1 2 3 27 27 H 1.08996 * 109.47170 * 349.73467 * 1 2 3 28 28 H 1.08992 * 109.47449 * 109.74243 * 1 2 3 29 29 H 1.08996 * 109.47366 * 250.26237 * 4 3 2 30 30 H 1.09000 * 109.47090 * 10.26048 * 4 3 2 31 31 H 1.08996 * 109.47407 * 300.00412 * 5 4 3 32 32 H 1.09004 * 109.46733 * 59.99729 * 5 4 3 33 33 H 1.09000 * 109.47380 * 299.99696 * 6 5 4 34 34 H 1.08996 * 109.47134 * 60.00785 * 6 5 4 35 35 H 0.96996 * 120.00263 * 0.02562 * 9 7 6 36 36 H 1.09004 * 109.47042 * 300.00299 * 10 9 7 37 37 H 1.09000 * 109.47175 * 60.00340 * 10 9 7 38 38 H 1.08998 * 113.61340 * 254.52961 * 13 11 10 39 39 H 1.08999 * 113.61606 * 25.35182 * 13 11 10 40 40 H 0.97001 * 119.99732 * 334.99696 * 16 14 13 41 41 H 0.96997 * 120.00014 * 179.97438 * 20 19 17 42 42 H 1.09002 * 113.61062 * 334.56352 * 25 11 10 43 43 H 1.09003 * 113.61495 * 105.46452 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6272 0.9345 -1.1009 6 6 6.1572 0.9364 -1.1004 7 6 6.6586 1.8555 -2.1844 8 8 5.8699 2.4508 -2.8875 9 7 7.9835 2.0167 -2.3715 10 6 8.4711 2.9098 -3.4256 11 6 10.0010 2.9118 -3.4252 12 1 10.4255 1.9132 -3.3210 13 6 10.6163 3.7258 -4.5757 14 6 11.6618 4.2203 -3.5620 15 1 11.9124 5.2753 -3.6728 16 7 12.8448 3.3608 -3.4724 17 6 14.0379 3.8805 -3.0462 18 1 14.1069 4.9239 -2.7766 19 6 15.1590 3.0662 -2.9619 20 7 16.3058 3.5658 -2.5528 21 14 15.0398 1.2615 -3.4291 22 1 15.3403 1.1036 -4.8748 23 1 16.0176 0.4782 -2.6318 24 1 13.6669 0.7681 -3.1522 25 6 10.6154 3.9473 -2.4686 26 1 -0.3633 -0.6641 0.7843 27 1 -0.3633 1.0112 0.1831 28 1 -0.3634 -0.3471 -0.9672 29 1 4.4811 0.3492 0.9672 30 1 4.4823 -1.0091 -0.1831 31 1 4.2641 0.5871 -2.0681 32 1 4.2629 1.9454 -0.9178 33 1 6.5198 1.2841 -0.1332 34 1 6.5217 -0.0744 -1.2833 35 1 8.6143 1.5409 -1.8089 36 1 8.1088 2.5618 -4.3930 37 1 8.1060 3.9205 -3.2431 38 1 11.0364 3.1096 -5.3706 39 1 9.9634 4.5137 -4.9510 40 1 12.7829 2.4236 -3.7150 41 1 17.0891 2.9967 -2.4935 42 1 9.9628 4.7967 -2.2670 43 1 11.0347 3.5099 -1.5624 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707086874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:38 Heat of formation + Delta-G solvation = 20.063864 kcal Electronic energy + Delta-G solvation = -20158.627856 eV Core-core repulsion = 17012.286732 eV Total energy + Delta-G solvation = -3146.341124 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.94805 -38.70229 -36.03488 -34.74600 -33.58118 -33.24203 -30.80136 -30.04558 -27.90158 -26.38171 -25.20394 -23.57532 -22.46687 -21.66287 -20.41277 -18.63927 -17.71417 -17.45100 -16.46671 -16.27443 -16.02941 -15.15843 -14.87410 -14.47715 -14.22028 -14.17719 -13.99647 -13.74798 -13.56487 -13.46010 -12.95476 -12.65482 -12.62454 -12.40103 -12.07454 -11.84462 -11.58834 -11.38905 -11.21441 -10.94630 -10.53869 -10.31858 -10.19104 -10.07384 -9.97946 -9.85413 -9.68620 -9.54338 -9.07421 -8.94422 -7.34166 -5.83310 -3.19621 2.39843 2.44511 2.56382 3.14017 3.30825 3.34237 3.40049 3.93555 4.51056 4.52328 4.68291 4.71903 4.88747 4.91840 5.02897 5.09703 5.12727 5.19778 5.24851 5.27639 5.33321 5.33604 5.36200 5.41478 5.48635 5.64742 5.73068 5.81483 5.84690 5.90097 5.98418 6.09744 6.20443 6.33524 6.46669 6.58835 6.71419 6.86040 7.38005 7.43955 7.94638 8.15158 8.36361 9.14078 9.86260 10.05513 11.34775 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032657 B = 0.002331 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.202033 B =12008.032349 C =12469.706226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C -0.198 4.198 3 C -0.184 4.184 4 C -0.007 4.007 5 C -0.098 4.098 6 C -0.143 4.143 7 C 0.509 3.491 8 O -0.546 6.546 9 N -0.727 5.727 10 C 0.130 3.870 11 C -0.123 4.123 12 H 0.089 0.911 13 C -0.149 4.149 14 C 0.172 3.828 15 H 0.071 0.929 16 N -0.730 5.730 17 C -0.248 4.248 18 H 0.092 0.908 19 C 0.006 3.994 20 N -0.931 5.931 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.278 1.278 25 C -0.166 4.166 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.402 0.598 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.072 0.928 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.849 -7.685 4.200 27.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.198 4.198 3 C -0.184 4.184 4 C -0.044 4.044 5 C -0.136 4.136 6 C -0.183 4.183 7 C 0.295 3.705 8 O -0.424 6.424 9 N -0.378 5.378 10 C 0.007 3.993 11 C -0.142 4.142 12 H 0.107 0.893 13 C -0.189 4.189 14 C 0.060 3.940 15 H 0.089 0.911 16 N -0.370 5.370 17 C -0.377 4.377 18 H 0.110 0.890 19 C -0.190 4.190 20 N -0.579 5.579 21 Si 0.715 3.285 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.207 4.207 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.236 0.764 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -26.172 -7.090 3.759 27.375 hybrid contribution 0.388 -1.640 0.031 1.686 sum -25.785 -8.731 3.790 27.485 Atomic orbital electron populations 1.18841 0.84750 1.02993 1.02947 1.22430 0.93998 1.01747 1.01658 1.22325 0.93664 1.01217 1.01243 1.18715 0.84490 1.01016 1.00169 1.21271 0.92949 1.00491 0.98933 1.21692 0.97383 1.00390 0.98788 1.20672 0.82308 0.82478 0.85017 1.90701 1.55323 1.48478 1.47902 1.46113 1.06953 1.47722 1.37014 1.21458 0.93877 0.93763 0.90208 1.22750 0.92119 0.99655 0.99672 0.89259 1.23464 0.98959 0.99538 0.96904 1.21005 0.85532 0.95141 0.92277 0.91063 1.42510 1.06458 1.08101 1.79905 1.19118 0.85055 0.96640 1.36924 0.89016 1.24682 0.95474 0.97620 1.01232 1.69695 1.00093 1.35241 1.52834 0.86557 0.76967 0.86650 0.78341 1.21012 1.21673 1.20434 1.23853 0.99773 0.97780 0.99297 0.90325 0.90238 0.90256 0.89496 0.89545 0.90822 0.90777 0.88550 0.88647 0.76375 0.91895 0.91467 0.91451 0.89996 0.80535 0.92971 0.90955 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.23 10.32 34.37 0.35 0.13 16 2 C -0.20 -1.90 14.13 -37.12 -0.52 -2.43 16 3 C -0.18 -1.83 13.34 -37.12 -0.50 -2.32 16 4 C -0.01 -0.05 5.70 -29.51 -0.17 -0.22 16 5 C -0.10 -0.86 4.46 -26.73 -0.12 -0.97 16 6 C -0.14 -1.08 5.70 -27.88 -0.16 -1.24 16 7 C 0.51 5.92 7.83 -10.98 -0.09 5.84 16 8 O -0.55 -8.60 15.98 5.56 0.09 -8.51 16 9 N -0.73 -7.90 5.56 -60.29 -0.33 -8.23 16 10 C 0.13 1.61 5.51 -4.04 -0.02 1.59 16 11 C -0.12 -1.66 3.63 -89.81 -0.33 -1.99 16 12 H 0.09 1.26 8.14 -51.92 -0.42 0.83 16 13 C -0.15 -2.18 7.39 -25.92 -0.19 -2.37 16 14 C 0.17 3.14 4.56 -67.12 -0.31 2.84 16 15 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 16 N -0.73 -16.58 5.12 -52.64 -0.27 -16.85 16 17 C -0.25 -6.81 10.45 -15.06 -0.16 -6.97 16 18 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 19 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 20 N -0.93 -28.74 13.97 55.49 0.78 -27.96 16 21 Si 0.88 21.51 27.73 -169.99 -4.71 16.80 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 25 C -0.17 -2.55 7.43 -25.92 -0.19 -2.75 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.40 3.56 8.47 -40.82 -0.35 3.22 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 40 H 0.36 8.04 5.76 -40.82 -0.24 7.81 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 42 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -33.81 363.36 -8.79 -42.60 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.32 Total: 7.48 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -2.49 Total: -10.80 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.17 Total: -53.05 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.09 Total: -8.51 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.80 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.81 -8.79 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707086874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.665 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds