Wall clock time and date at job start Tue Mar 31 2020 00:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17393 * 179.97438 * 2 1 4 4 C 1.47206 * 179.97438 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47021 * 130.25800 * 4 3 2 6 6 C 1.52996 * 109.46972 * 179.97438 * 5 4 3 7 7 C 1.50708 * 109.46729 * 180.02562 * 6 5 4 8 8 O 1.21275 * 119.99870 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99487 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99750 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47368 * 180.02562 * 10 9 7 12 12 H 1.09008 * 112.84550 * 43.80377 * 11 10 9 13 13 C 1.53781 * 113.61624 * 174.99938 * 11 10 9 14 14 C 1.53785 * 87.07956 * 139.98457 * 13 11 10 15 15 H 1.09001 * 113.60719 * 220.01939 * 14 13 11 16 16 N 1.46502 * 113.61607 * 89.20195 * 14 13 11 17 17 C 1.36938 * 119.99583 * 154.99969 * 16 14 13 18 18 H 1.07993 * 120.00456 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99553 * 180.02562 * 17 16 14 20 20 N 1.31615 * 119.99920 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99885 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47061 * 90.00352 * 21 19 17 23 23 H 1.48506 * 109.46808 * 209.99946 * 21 19 17 24 24 H 1.48492 * 109.47498 * 330.00081 * 21 19 17 25 25 C 1.53778 * 113.61642 * 272.49913 * 11 10 9 26 26 H 1.09001 * 109.47046 * 229.74167 * 1 2 3 27 27 H 1.08996 * 109.47170 * 349.73467 * 1 2 3 28 28 H 1.08992 * 109.47449 * 109.74243 * 1 2 3 29 29 H 1.08996 * 109.47366 * 250.26237 * 4 3 2 30 30 H 1.09000 * 109.47090 * 10.26048 * 4 3 2 31 31 H 1.08996 * 109.47407 * 300.00412 * 5 4 3 32 32 H 1.09004 * 109.46733 * 59.99729 * 5 4 3 33 33 H 1.09000 * 109.47380 * 299.99696 * 6 5 4 34 34 H 1.08996 * 109.47134 * 60.00785 * 6 5 4 35 35 H 0.96996 * 120.00263 * 0.02562 * 9 7 6 36 36 H 1.09004 * 109.47042 * 300.00299 * 10 9 7 37 37 H 1.09000 * 109.47175 * 60.00340 * 10 9 7 38 38 H 1.08998 * 113.61340 * 254.52961 * 13 11 10 39 39 H 1.08999 * 113.61606 * 25.35182 * 13 11 10 40 40 H 0.97001 * 119.99732 * 334.99696 * 16 14 13 41 41 H 0.96997 * 120.00014 * 179.97438 * 20 19 17 42 42 H 1.09002 * 113.61062 * 334.56352 * 25 11 10 43 43 H 1.09003 * 113.61495 * 105.46452 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6272 0.9345 -1.1009 6 6 6.1572 0.9364 -1.1004 7 6 6.6586 1.8555 -2.1844 8 8 5.8699 2.4508 -2.8875 9 7 7.9835 2.0167 -2.3715 10 6 8.4711 2.9098 -3.4256 11 6 10.0010 2.9118 -3.4252 12 1 10.4255 1.9132 -3.3210 13 6 10.6163 3.7258 -4.5757 14 6 11.6618 4.2203 -3.5620 15 1 11.9124 5.2753 -3.6728 16 7 12.8448 3.3608 -3.4724 17 6 14.0379 3.8805 -3.0462 18 1 14.1069 4.9239 -2.7766 19 6 15.1590 3.0662 -2.9619 20 7 16.3058 3.5658 -2.5528 21 14 15.0398 1.2615 -3.4291 22 1 15.3403 1.1036 -4.8748 23 1 16.0176 0.4782 -2.6318 24 1 13.6669 0.7681 -3.1522 25 6 10.6154 3.9473 -2.4686 26 1 -0.3633 -0.6641 0.7843 27 1 -0.3633 1.0112 0.1831 28 1 -0.3634 -0.3471 -0.9672 29 1 4.4811 0.3492 0.9672 30 1 4.4823 -1.0091 -0.1831 31 1 4.2641 0.5871 -2.0681 32 1 4.2629 1.9454 -0.9178 33 1 6.5198 1.2841 -0.1332 34 1 6.5217 -0.0744 -1.2833 35 1 8.6143 1.5409 -1.8089 36 1 8.1088 2.5618 -4.3930 37 1 8.1060 3.9205 -3.2431 38 1 11.0364 3.1096 -5.3706 39 1 9.9634 4.5137 -4.9510 40 1 12.7829 2.4236 -3.7150 41 1 17.0891 2.9967 -2.4935 42 1 9.9628 4.7967 -2.2670 43 1 11.0347 3.5099 -1.5624 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707086874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:37 Heat of formation + Delta-G solvation = -1.805900 kcal Electronic energy + Delta-G solvation = -20159.576200 eV Core-core repulsion = 17012.286732 eV Total energy + Delta-G solvation = -3147.289468 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93858 -39.94706 -36.70336 -36.01083 -34.93995 -34.19350 -32.66638 -30.76546 -28.90421 -27.15877 -26.45542 -25.34692 -23.49596 -22.75354 -21.30649 -20.09805 -19.55561 -18.29671 -17.22281 -17.08497 -16.96659 -16.54882 -16.18773 -15.77485 -15.34430 -15.03366 -14.76812 -14.70593 -14.59713 -14.39447 -14.19783 -14.07321 -13.42019 -13.29479 -13.20251 -13.05677 -12.97970 -12.67206 -12.47724 -12.17899 -11.87447 -11.85852 -11.63077 -11.55202 -11.04562 -10.93290 -10.78250 -10.60926 -10.58113 -10.02598 -9.29233 -8.02167 -5.36002 1.37758 1.42476 1.49480 1.69278 1.71423 1.77576 2.30241 2.48768 3.28128 3.38227 3.51692 3.70944 3.76109 3.89479 4.02720 4.08175 4.13296 4.27965 4.38644 4.49262 4.64011 4.69085 4.72524 4.75877 4.79842 4.81276 4.85105 4.88668 4.93104 4.98007 5.09136 5.14589 5.20194 5.27284 5.31457 5.35274 5.52792 5.57123 5.81352 6.22971 6.61014 6.72610 7.08342 7.30328 7.84982 8.04001 9.19273 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032657 B = 0.002331 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.202033 B =12008.032349 C =12469.706226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.219 4.219 3 C -0.216 4.216 4 C -0.004 4.004 5 C -0.092 4.092 6 C -0.133 4.133 7 C 0.504 3.496 8 O -0.594 6.594 9 N -0.720 5.720 10 C 0.137 3.863 11 C -0.103 4.103 12 H 0.092 0.908 13 C -0.135 4.135 14 C 0.144 3.856 15 H 0.056 0.944 16 N -0.733 5.733 17 C -0.234 4.234 18 H 0.055 0.945 19 C -0.065 4.065 20 N -0.984 5.984 21 Si 0.957 3.043 22 H -0.280 1.280 23 H -0.297 1.297 24 H -0.247 1.247 25 C -0.154 4.154 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.414 0.586 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.367 0.633 41 H 0.258 0.742 42 H 0.089 0.911 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.754 -9.822 4.415 29.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.219 4.219 3 C -0.216 4.216 4 C -0.040 4.040 5 C -0.131 4.131 6 C -0.172 4.172 7 C 0.293 3.707 8 O -0.475 6.475 9 N -0.372 5.372 10 C 0.014 3.986 11 C -0.122 4.122 12 H 0.110 0.890 13 C -0.174 4.174 14 C 0.035 3.965 15 H 0.074 0.926 16 N -0.374 5.374 17 C -0.365 4.365 18 H 0.073 0.927 19 C -0.256 4.256 20 N -0.634 5.634 21 Si 0.784 3.216 22 H -0.207 1.207 23 H -0.224 1.224 24 H -0.171 1.171 25 C -0.194 4.194 26 H 0.112 0.888 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.251 0.749 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.122 0.878 40 H 0.201 0.799 41 H 0.066 0.934 42 H 0.107 0.893 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -28.134 -9.231 3.980 29.876 hybrid contribution 0.920 -0.821 -0.035 1.234 sum -27.214 -10.052 3.945 29.278 Atomic orbital electron populations 1.19052 0.82752 1.04052 1.04096 1.23423 0.95484 1.01588 1.01449 1.23128 0.94980 1.01707 1.01763 1.18804 0.83143 1.01683 1.00347 1.21156 0.93940 0.99505 0.98456 1.21717 0.96177 1.00941 0.98383 1.21381 0.81954 0.82224 0.85163 1.90686 1.56437 1.50493 1.49854 1.46053 1.07174 1.47286 1.36658 1.21260 0.92716 0.93922 0.90748 1.22563 0.92785 0.99010 0.97824 0.89026 1.23368 0.97516 1.00137 0.96418 1.21345 0.85400 0.93980 0.95794 0.92597 1.42411 1.06201 1.08771 1.80065 1.19068 0.87008 0.95166 1.35263 0.92659 1.25530 0.95014 1.02886 1.02183 1.69888 1.01089 1.37155 1.55311 0.85387 0.78285 0.80254 0.77692 1.20675 1.22382 1.17088 1.23693 0.98696 0.98987 0.98014 0.88758 0.89286 0.89260 0.87722 0.87645 0.92887 0.92985 0.85923 0.85778 0.74907 0.92049 0.92018 0.91426 0.87787 0.79918 0.93356 0.89288 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.45 10.32 70.18 0.72 0.27 16 2 C -0.22 -4.08 14.13 31.13 0.44 -3.64 16 3 C -0.22 -4.11 13.34 31.13 0.42 -3.69 16 4 C 0.00 -0.04 5.70 28.79 0.16 0.12 16 5 C -0.09 -1.49 4.46 30.59 0.14 -1.35 16 6 C -0.13 -1.61 5.70 29.85 0.17 -1.44 16 7 C 0.50 10.65 7.83 87.66 0.69 11.34 16 8 O -0.59 -18.22 15.98 -3.01 -0.05 -18.27 16 9 N -0.72 -13.54 5.56 -463.06 -2.57 -16.11 16 10 C 0.14 3.03 5.51 86.38 0.48 3.50 16 11 C -0.10 -2.48 3.63 -10.27 -0.04 -2.51 16 12 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 13 C -0.14 -3.60 7.39 31.12 0.23 -3.37 16 14 C 0.14 5.11 4.56 45.52 0.21 5.31 16 15 H 0.06 2.12 8.10 -2.39 -0.02 2.10 16 16 N -0.73 -32.58 5.12 -320.44 -1.64 -34.22 16 17 C -0.23 -13.07 10.45 84.03 0.88 -12.20 16 18 H 0.06 3.42 8.06 -2.91 -0.02 3.39 16 19 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 20 N -0.98 -62.41 13.97 21.65 0.30 -62.11 16 21 Si 0.96 44.04 27.73 68.60 1.90 45.95 16 22 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 23 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 24 H -0.25 -9.94 6.52 99.48 0.65 -9.29 16 25 C -0.15 -4.40 7.43 31.12 0.23 -4.17 16 26 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 32 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 33 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.41 5.81 8.47 -92.71 -0.79 5.02 16 36 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.06 1.46 7.84 -2.39 -0.02 1.44 16 38 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.10 2.34 8.10 -2.39 -0.02 2.33 16 40 H 0.37 15.44 5.76 -92.71 -0.53 14.90 16 41 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 42 H 0.09 2.27 7.90 -2.39 -0.02 2.26 16 43 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -76.06 363.36 2.75 -73.30 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: -0.38 Total: 26.57 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 5.19 Total: -15.11 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -3.91 Total: -112.44 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.05 Total: -18.27 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.90 Total: 45.95 kcal Total: -76.06 2.75 -73.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707086874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.498 kcal (2) G-P(sol) polarization free energy of solvation -76.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds