Wall clock time and date at job start Tue Mar 31 2020 00:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46795 * 2 1 4 4 C 1.47200 * 109.46777 * 119.99635 * 2 1 3 5 5 C 2.64603 * 109.47083 * 119.99798 * 2 1 3 6 6 C 4.07802 * 109.47122 * 119.99798 * 2 1 3 7 7 O 1.21619 * 119.99883 * 35.32320 * 6 5 4 8 8 N 1.34774 * 120.00208 * 215.32203 * 6 5 4 9 9 C 1.46500 * 120.00193 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47179 * 179.97438 * 9 8 6 11 11 C 1.52993 * 109.47105 * 179.97438 * 10 9 8 12 12 N 1.46504 * 109.47058 * 179.97438 * 11 10 9 13 13 C 1.36935 * 119.99937 * 270.00095 * 12 11 10 14 14 H 1.08003 * 119.99855 * 144.92770 * 13 12 11 15 15 C 1.38814 * 120.00273 * 324.92932 * 13 12 11 16 16 N 1.31620 * 119.99838 * 337.93463 * 15 13 12 17 17 Si 1.86801 * 120.00091 * 157.93681 * 15 13 12 18 18 H 1.48501 * 109.46754 * 89.99914 * 17 15 13 19 19 H 1.48495 * 109.46949 * 209.99670 * 17 15 13 20 20 H 1.48495 * 109.47225 * 330.00128 * 17 15 13 21 21 C 1.46494 * 119.99631 * 90.00309 * 12 11 10 22 22 C 1.53008 * 117.49603 * 183.23516 * 21 12 11 23 23 C 1.53005 * 117.50060 * 114.58020 * 21 12 11 24 24 H 1.08998 * 109.47518 * 60.00390 * 1 2 3 25 25 H 1.09004 * 109.47439 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47580 * 299.99881 * 1 2 3 27 27 H 1.09002 * 109.47031 * 239.99602 * 2 1 3 28 28 H 1.09002 * 109.46447 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47358 * 299.99627 * 3 2 1 30 30 H 1.08995 * 109.47478 * 60.00363 * 3 2 1 31 31 H 0.96999 * 119.99484 * 359.97438 * 8 6 5 32 32 H 1.08999 * 109.46741 * 59.99753 * 9 8 6 33 33 H 1.08998 * 109.46801 * 300.00115 * 9 8 6 34 34 H 1.09002 * 109.46733 * 59.99597 * 10 9 8 35 35 H 1.09002 * 109.46889 * 300.00553 * 10 9 8 36 36 H 1.09004 * 109.46724 * 60.00538 * 11 10 9 37 37 H 1.08991 * 109.47467 * 300.00398 * 11 10 9 38 38 H 0.96995 * 119.99672 * 176.06957 * 16 15 13 39 39 H 1.08998 * 115.55292 * 328.90743 * 21 12 11 40 40 H 1.09004 * 117.49709 * 0.02562 * 22 21 12 41 41 H 1.09001 * 117.49616 * 145.02232 * 22 21 12 42 42 H 1.08992 * 117.50031 * 214.97936 * 23 21 12 43 43 H 1.09007 * 117.49694 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0206 -0.6938 1.2020 5 6 2.4120 -1.2473 2.1605 6 6 2.8893 -1.9223 3.3298 7 8 2.6775 -3.1111 3.4747 8 7 3.5734 -1.2402 4.2696 9 6 4.0622 -1.9309 5.4655 10 6 4.8004 -0.9359 6.3632 11 6 5.3104 -1.6570 7.6124 12 7 6.0178 -0.7044 8.4717 13 6 7.3640 -0.5092 8.3144 14 1 7.7889 0.4719 8.4675 15 6 8.1825 -1.5721 7.9579 16 7 7.7926 -2.8083 8.1864 17 14 9.8374 -1.2481 7.1542 18 1 10.8805 -1.1198 8.2034 19 1 10.1790 -2.3770 6.2521 20 1 9.7682 0.0101 6.3685 21 6 5.2849 0.0393 9.4993 22 6 6.0643 1.0742 10.3133 23 6 5.6349 -0.2444 10.9615 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1299 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.7426 -0.2922 4.1538 32 1 4.7437 -2.7290 5.1710 33 1 3.2189 -2.3557 6.0099 34 1 4.1192 -0.1375 6.6576 35 1 5.6438 -0.5114 5.8184 36 1 5.9915 -2.4556 7.3183 37 1 4.4668 -2.0812 8.1570 38 1 8.3381 -3.5521 7.8862 39 1 4.2441 0.2631 9.2652 40 1 7.1223 1.2019 10.0840 41 1 5.5361 1.9786 10.6151 42 1 4.8245 -0.2069 11.6893 43 1 6.4102 -0.9848 11.1589 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707476713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:46 Heat of formation + Delta-G solvation = 43.875124 kcal Electronic energy + Delta-G solvation = -20643.507183 eV Core-core repulsion = 17498.198593 eV Total energy + Delta-G solvation = -3145.308590 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.49925 -37.15151 -36.67687 -35.30087 -33.59936 -32.29325 -31.37852 -29.41339 -27.59990 -25.81836 -24.29719 -23.05569 -21.52118 -21.36397 -21.01161 -19.70973 -18.45157 -16.50254 -16.30280 -15.83873 -15.53960 -15.31382 -14.94211 -14.63240 -14.12243 -13.92703 -13.85868 -13.52518 -12.66010 -12.65645 -12.38690 -12.23881 -11.96358 -11.82609 -11.79840 -11.53456 -11.04762 -10.83789 -10.80742 -10.69340 -10.57493 -10.42120 -10.23887 -10.17783 -9.97162 -9.67109 -9.57984 -9.27756 -8.92907 -8.48731 -6.59845 -5.81539 -3.42015 1.54707 2.20098 3.13467 3.32621 3.41239 3.43124 3.53745 4.09652 4.42468 4.56790 4.70637 4.79835 4.91696 5.13330 5.19893 5.20638 5.30933 5.38834 5.45552 5.58170 5.62737 5.75510 5.79604 5.80470 5.90053 5.98896 6.10661 6.25806 6.31485 6.37137 6.48183 6.62901 6.66868 6.72186 7.02232 7.08738 7.11310 7.21541 7.54817 7.64987 7.77619 8.20027 8.44569 9.12245 9.75528 10.31130 11.14383 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017146 B = 0.003220 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.616486 B = 8692.663051 C = 9171.754437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.009 3.991 3 C -0.147 4.147 4 C -0.086 4.086 5 C -0.215 4.215 6 C 0.625 3.375 7 O -0.528 6.528 8 N -0.711 5.711 9 C 0.120 3.880 10 C -0.146 4.146 11 C 0.149 3.851 12 N -0.552 5.552 13 C -0.259 4.259 14 H 0.066 0.934 15 C 0.011 3.989 16 N -0.882 5.882 17 Si 0.895 3.105 18 H -0.286 1.286 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.121 3.879 22 C -0.197 4.197 23 C -0.222 4.222 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.403 0.597 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.029 0.971 38 H 0.255 0.745 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.795 7.935 -12.840 19.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.009 4.009 3 C -0.204 4.204 4 C -0.089 4.089 5 C -0.218 4.218 6 C 0.411 3.589 7 O -0.406 6.406 8 N -0.361 5.361 9 C -0.002 4.002 10 C -0.186 4.186 11 C 0.022 3.978 12 N -0.268 5.268 13 C -0.388 4.388 14 H 0.083 0.917 15 C -0.190 4.190 16 N -0.524 5.524 17 Si 0.724 3.276 18 H -0.212 1.212 19 H -0.214 1.214 20 H -0.203 1.203 21 C 0.011 3.989 22 C -0.235 4.235 23 C -0.263 4.263 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.237 0.763 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.047 0.953 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.804 6.884 -12.691 18.649 hybrid contribution 1.026 0.552 -0.360 1.219 sum -10.778 7.435 -13.050 18.487 Atomic orbital electron populations 1.21845 0.92834 1.02882 1.02795 1.18486 0.96236 0.95217 0.90938 1.21856 1.01849 0.93859 1.02838 1.22590 0.95105 0.96743 0.94434 1.20907 1.03557 1.00360 0.97012 1.14760 0.78371 0.85496 0.80228 1.90858 1.57502 1.14371 1.77876 1.46047 1.55381 1.13378 1.21301 1.21564 0.98458 0.96220 0.84007 1.22463 0.99143 0.98134 0.98861 1.20858 0.95621 0.93495 0.87807 1.43406 1.04570 1.46266 1.32571 1.19042 0.82667 0.93125 1.43984 0.91688 1.25129 0.97536 0.95204 1.01098 1.70033 1.39270 0.97758 1.45362 0.86440 0.84209 0.77526 0.79448 1.21241 1.21400 1.20331 1.21223 0.94011 0.97541 0.86079 1.23033 1.01804 0.92081 1.06583 1.23365 1.03646 0.99586 0.99723 0.91215 0.91922 0.91954 0.88188 0.91878 0.91251 0.91892 0.76322 0.90993 0.91475 0.93074 0.91428 0.87931 0.95259 0.93450 0.89618 0.88519 0.90824 0.91253 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.15 37.16 0.34 -0.57 16 2 C 0.01 0.07 3.30 -93.41 -0.31 -0.24 16 3 C -0.15 -0.88 9.15 37.16 0.34 -0.54 16 4 C -0.09 -0.98 12.56 -37.12 -0.47 -1.44 16 5 C -0.22 -3.00 13.61 -38.84 -0.53 -3.53 16 6 C 0.63 10.20 7.65 -14.34 -0.11 10.09 16 7 O -0.53 -10.55 17.09 5.26 0.09 -10.46 16 8 N -0.71 -10.42 5.55 -62.77 -0.35 -10.77 16 9 C 0.12 1.99 5.67 -4.04 -0.02 1.97 16 10 C -0.15 -2.61 5.65 -26.73 -0.15 -2.76 16 11 C 0.15 3.28 5.34 -4.04 -0.02 3.26 16 12 N -0.55 -13.15 2.78 -165.66 -0.46 -13.61 16 13 C -0.26 -6.75 8.63 -15.06 -0.13 -6.88 16 14 H 0.07 1.70 6.55 -52.48 -0.34 1.36 16 15 C 0.01 0.29 4.96 -17.43 -0.09 0.20 16 16 N -0.88 -24.63 11.33 55.49 0.63 -24.00 16 17 Si 0.89 21.02 29.61 -169.99 -5.03 15.99 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.12 2.52 6.56 -67.93 -0.45 2.08 16 22 C -0.20 -3.83 9.80 -26.69 -0.26 -4.09 16 23 C -0.22 -4.51 10.36 -26.69 -0.28 -4.78 16 24 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.40 4.91 8.44 -40.82 -0.34 4.56 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.10 2.59 5.35 -51.93 -0.28 2.31 16 37 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 38 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 39 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 40 H 0.10 2.05 6.37 -51.93 -0.33 1.72 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -30.49 365.29 -8.94 -39.43 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.19 Total: 5.15 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -2.13 Total: -7.23 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.18 Total: -48.38 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.49 -8.94 -39.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707476713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.304 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds